Pregenerated sensors for DHX40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018425Ensembl transcript IDs: ENSMUST00000018569.14
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCCTCAGTGACACTGTTTaGTACCAGTTAAGGCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: RKARWRGCLKSVTPTYMGLSDTV*YQLRPA Trigger: TGCTGGCCTTAACTGGTATCAAACAGTGTCACTGAG...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| 3UTR-3UTR TCA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCCCAGCAAAACAGAAGTaGGGGAAATATTGTATCATC | + |
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Preference number: 2 (lower is better) Translates to: RKARWRGCLKSVTPTYMGPAKQK*GKYCII Trigger: GATGATACAATATTTCCCTCACTTCTGTTTTGCTGG...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| 3UTR-3UTR TCA 90 bp | CACTGTTTGATACCAGTTAAGGCCAGCAAAACAGAAGTGAGGGAAATATTGTATGTGATTTATAAATTCTaGTTTGCTTTCGGCTCACAG | + |
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Preference number: 2 (lower is better) Translates to: HCLIPVKASKTEVREILYVIYKF*FAFGSQ Trigger: CTGTGAGCCGAAAGCAAATCAGAATTTATAAATCAC...ATACAATATTTCCCTCACTTCTGTTTTGCTGGCCTTAACTGGTATCAAACAGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| 3UTR TCA 72 bp | TGGCCTGAGTGTAATATTAGCCTCAAGGTTTTGATTTaGAACATTAGTGAAGTGTTGGCCGCTTTGAAAAAT | + |
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Preference number: 3 (lower is better) Translates to: WPECNISLKVLI*NISEVLAALKN Trigger: ATTTTTCAAAGCGGCCAACACTTCACTAATGTTTCAAATCAAAACCTTGAGGCTAATATTACACTCAGGCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCGACGGCCGCTCTTCCTaGAGCTCTATTGGCCGCTCG | + |
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Preference number: 4 (lower is better) Translates to: RKARWRGCLKSVTPTYMGDGRSS*SSIGRS Trigger: CGAGCGGCCAATAGAGCTCCAGGAAGAGCGGCCGTC...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | TTTATAAATTCTGATTTGCTTTCGGCTCACAGGCTAGGAACAGCTGCTGACCACTTCCTCCTGCCGCCTTaGCGCCCTGCCCGCGACGGC | + |
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Preference number: 4 (lower is better) Translates to: FINSDLLSAHRLGTAADHFLLPP*RPARDG Trigger: GCCGTCGCGGGCAGGGCGCCAAGGCGGCAGGAGGAA...GTGGTCAGCAGCTGTTCCTAGCCTGTGAGCCGAAAGCAAATCAGAATTTATAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCGGCGGCTACTTTTCGTaGCTGAGTCACACCAATCAT | + |
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Preference number: 4 (lower is better) Translates to: RKARWRGCLKSVTPTYMGGGYFS*LSHTNH Trigger: ATGATTGGTGTGACTCAGCCACGAAAAGTAGCCGCC...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR GCA 90 bp | CCTTCTGAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATAAGAAGCGCTCGCCTTCCTCCTaGCGCCTTGGCGCCCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: PSEMVTYLIQHYSNSNKKRSPSS*RLGALP Trigger: GGGCAGGGCGCCAAGGCGGCAGGAGGAAGGCGAGCG...CTTCTTATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTCAGAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCTCTGAGCAACTGATATaGCGGCTACTTTTCGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: RKARWRGCLKSVTPTYMGSEQLI*RLLFVA Trigger: AGCCACGAAAAGTAGCCGCCATATCAGTTGCTCAGA...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | CACAGGCTAGGAACAGCTGCTGACCACTTCCTTCTGATAGTACTGTCGGAAATATGCACACGTCAGATGTaGGGGGAGAGGGAACTCCAC | + |
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Preference number: 4 (lower is better) Translates to: HRLGTAADHFLLIVLSEICTRQM*GERELH Trigger: GTGGAGTTCCCTCTCCCCCCACATCTGACGTGTGCA...TATTTCCGACAGTACTATCAGAAGGAAGTGGTCAGCAGCTGTTCCTAGCCTGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | CTTCTGATAGTACTGTCGGAAATAACTGGCAAAACAGAAGCACATTTCCTGGCTAGCGATGCGAACAGCTaGCGGCCGCTCTTCCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: LLIVLSEITGKTEAHFLASDANS*RPLFLE Trigger: CTCCAGGAAGAGCGGCCGTCAGCTGTTCGCATCGCT...AGCCAGGAAATGTGCTTCTGTTTTGCCAGTTATTTCCGACAGTACTATCAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCTTCGAGCAACATTTTTaGAGTAGCCTGCACAAAGAC | + |
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Preference number: 4 (lower is better) Translates to: RKARWRGCLKSVTPTYMGFEQHF*SSLHKD Trigger: GTCTTTGTGCAGGCTACTTCAAAAATGTTGCTCGAA...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR GCA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCCTGTTTCCTTGGAGCTaGAATCATCAAAACGAACTT | + |
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Preference number: 4 (lower is better) Translates to: RKARWRGCLKSVTPTYMGLFPWS*NHQNEL Trigger: AAGTTCGTTTTGATGATTGCAGCTCCAAGGAAACAG...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR GCA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCAGTCATGTATTTGATTaGTGTTTCCTTGGAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: RKARWRGCLKSVTPTYMGSHVFD*CFLGAA Trigger: TGCAGCTCCAAGGAAACAGCAATCAAATACATGACT...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | CACAGGCTAGGAACAGCTGCTGACCACTTCCTTCTGATAGTACTGTCGGAAATATTGGTTTCCTGTTCATaGAGTGCTGAGGAAGGATGG | + |
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Preference number: 4 (lower is better) Translates to: HRLGTAADHFLLIVLSEILVSCS*SAEEGW Trigger: CCATCCTTCCTCAGCACTTCATGAACAGGAAACCAA...TATTTCCGACAGTACTATCAGAAGGAAGTGGTCAGCAGCTGTTCCTAGCCTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCTCATCAAAACGAACTTaGTATCCTACTTTAGATCCC | + |
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Preference number: 4 (lower is better) Translates to: RKARWRGCLKSVTPTYMGSSKRT*YPTLDP Trigger: GGGATCTAAAGTAGGATACCAAGTTCGTTTTGATGA...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | CTTCTGATAGTACTGTCGGAAATAACTGGCAAAACAGAAGCACATTTCCTGGCTGAGGAAGGATGGATATaGACTGGACTTCCACGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: LLIVLSEITGKTEAHFLAEEGWI*TGLPRP Trigger: TGGGCGTGGAAGTCCAGTTCATATCCATCCTTCCTC...AGCCAGGAAATGTGCTTCTGTTTTGCCAGTTATTTCCGACAGTACTATCAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | CTTCTGATAGTACTGTCGGAAATAACTGGCAAAACAGAAGCACATTTCCTGGCTGCTACTTTTCGTGGCTaGGTCACACCAATCATACCA | + |
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Preference number: 4 (lower is better) Translates to: LLIVLSEITGKTEAHFLAATFRG*VTPIIP Trigger: TGGTATGATTGGTGTGACTCAGCCACGAAAAGTAGC...AGCCAGGAAATGTGCTTCTGTTTTGCCAGTTATTTCCGACAGTACTATCAGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | TTTATAAATTCTGATTTGCTTTCGGCTCACAGGCTAGGAACAGCTGCTGACCACAGCCGGAGCTCCACTTaGTTTGCACTGTTCAAAAAT | + |
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Preference number: 4 (lower is better) Translates to: FINSDLLSAHRLGTAADHSRSST*FALFKN Trigger: ATTTTTGAACAGTGCAAATCAAGTGGAGCTCCGGCT...GTGGTCAGCAGCTGTTCCTAGCCTGTGAGCCGAAAGCAAATCAGAATTTATAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | CACAGGCTAGGAACAGCTGCTGACCACTTCCTTCTGATAGTACTGTCGGAAATACCCGTGCATCTGATATaGATTTGTCATCATTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: HRLGTAADHFLLIVLSEIPVHLI*ICHHFF Trigger: GAAGAAATGATGACAAATCCATATCAGATGCACGGG...TATTTCCGACAGTACTATCAGAAGGAAGTGGTCAGCAGCTGTTCCTAGCCTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | CACTGTTTGATACCAGTTAAGGCCAGCAAAACAGAAGTGAGGGAAATATTGTATTGTTCCTCCCTCCTGTaGTGTGCATCCTTTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: HCLIPVKASKTEVREILYCSSLL*CASFLF Trigger: GAAGAGAAAGGATGCACATCACAGGAGGGAGGAACA...ATACAATATTTCCCTCACTTCTGTTTTGCTGGCCTTAACTGGTATCAAACAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | GAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATAAGAAGGCCTTGAACCCTCTGAGCAACTaGTATGGCGGCTACTTTTCG | + |
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Preference number: 4 (lower is better) Translates to: EMVTYLIQHYSNSNKKALNPLSN*YGGYFS Trigger: CGAAAAGTAGCCGCCATATCAGTTGCTCAGAGGGTT...CAAGGCCTTCTTATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | TTTATAAATTCTGATTTGCTTTCGGCTCACAGGCTAGGAACAGCTGCTGACCACAATATTCTCCTCTGTTaGTCTGTTGTCATAGAGCCG | + |
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Preference number: 4 (lower is better) Translates to: FINSDLLSAHRLGTAADHNILLC*SVVIEP Trigger: CGGCTCTATGACAACAGATCAACAGAGGAGAATATT...GTGGTCAGCAGCTGTTCCTAGCCTGTGAGCCGAAAGCAAATCAGAATTTATAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | TTTATAAATTCTGATTTGCTTTCGGCTCACAGGCTAGGAACAGCTGCTGACCACAATTCCAGGAGGAGGTaGCAAAAATATTCTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: FINSDLLSAHRLGTAADHNSRRR*QKYSPL Trigger: CAGAGGAGAATATTTTTGCCACCTCCTCCTGGAATT...GTGGTCAGCAGCTGTTCCTAGCCTGTGAGCCGAAAGCAAATCAGAATTTATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | GTTCAGCCTTCTGAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATGTGTCACTGTGGTCCTaGATTCTCTGTTGCTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: VQPSEMVTYLIQHYSNSNVSLWS*ILCCFL Trigger: GAGAAAGCAACAGAGAATCCAGGACCACAGTGACAC...ATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTCAGAAGGCTGAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR GCA 90 bp | CCTTCTGAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATAAGAAGCTCCCTCCTGTGATGTaGATCCTTTCTCTTCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: PSEMVTYLIQHYSNSNKKLPPVM*ILSLLC Trigger: ACAGAGAAGAGAAAGGATGCACATCACAGGAGGGAG...CTTCTTATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTCAGAAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR GCA 90 bp | CTTCTGATAGTACTGTCGGAAATAACTGGCAAAACAGAAGCACATTTCCTGGCTGGGAAATCACTTTGCTaGTTTAGTTTCCTGATCAGT | + |
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Preference number: 4 (lower is better) Translates to: LLIVLSEITGKTEAHFLAGKSLC*FSFLIS Trigger: ACTGATCAGGAAACTAAAGCAGCAAAGTGATTTCCC...AGCCAGGAAATGTGCTTCTGTTTTGCCAGTTATTTCCGACAGTACTATCAGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | CCTTCTGAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATAAGAAGCTGAATAGGAAACGTTaGAGTTGTTCCTCCCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: PSEMVTYLIQHYSNSNKKLNRKR*SCSSLL Trigger: CAGGAGGGAGGAACAACTCCAACGTTTCCTATTCAG...CTTCTTATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTCAGAAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | GTTCAGCCTTCTGAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATCATAGAGCCGTAACATaGCAGAATCAACAAGCCATC | + |
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Preference number: 4 (lower is better) Translates to: VQPSEMVTYLIQHYSNSNHRAVT*QNQQAI Trigger: GATGGCTTGTTGATTCTGCCATGTTACGGCTCTATG...ATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTCAGAAGGCTGAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | CACTGTTTGATACCAGTTAAGGCCAGCAAAACAGAAGTGAGGGAAATATTGTATAGGTATTTAGGGAGTTaGGTTGTTTTACCACTTCCT | + |
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Preference number: 4 (lower is better) Translates to: HCLIPVKASKTEVREILYRYLGS*VVLPLP Trigger: AGGAAGTGGTAAAACAACTCAACTCCCTAAATACCT...ATACAATATTTCCCTCACTTCTGTTTTGCTGGCCTTAACTGGTATCAAACAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | GAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATAAGAAGGCCTTGAATATGGAAACCTTATaGCATCATGTATGGCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: EMVTYLIQHYSNSNKKALNMETL*HHVWQG Trigger: GCCTTGCCATACATGATGTCATAAGGTTTCCATATT...CAAGGCCTTCTTATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR GCA 90 bp | GAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATAAGAAGGCCTTGACACTGCTCAAATCATaGGCATTAAGTTCATGCAAC | + |
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Preference number: 4 (lower is better) Translates to: EMVTYLIQHYSNSNKKALTLLKS*ALSSCN Trigger: GTTGCATGAACTTAATGCGCATGATTTGAGCAGTGT...CAAGGCCTTCTTATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | CCTTCTGAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATAAGAAGTTCCTTCTGGTACTCTaGATCAACAGGTCTGATGAA | + |
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Preference number: 4 (lower is better) Translates to: PSEMVTYLIQHYSNSNKKFLLVL*INRSDE Trigger: TTCATCAGACCTGTTGATCCAGAGTACCAGAAGGAA...CTTCTTATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTCAGAAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | CACTGTTTGATACCAGTTAAGGCCAGCAAAACAGAAGTGAGGGAAATATTGTATCCATTCATAACGGATTaGGCACACAATTCTTGCATA | + |
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Preference number: 4 (lower is better) Translates to: HCLIPVKASKTEVREILYPFITD*AHNSCI Trigger: TATGCAAGAATTGTGTGCCCAATCCGTTATGAATGG...ATACAATATTTCCCTCACTTCTGTTTTGCTGGCCTTAACTGGTATCAAACAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | GTTCAGCCTTCTGAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATAATCATACCATGTTGTaGAAACCCTGCTTCATAAAG | + |
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Preference number: 4 (lower is better) Translates to: VQPSEMVTYLIQHYSNSNNHTML*KPCFIK Trigger: CTTTATGAAGCAGGGTTTTCACAACATGGTATGATT...ATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTCAGAAGGCTGAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR GCA 90 bp | CCTTCTGAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATAAGAAGTTGTGCAAAATGTTCTaGCAACAGATCTTCGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: PSEMVTYLIQHYSNSNKKLCKMF*QQIFEQ Trigger: TTGCTCGAAGATCTGTTGGCAGAACATTTTGCACAA...CTTCTTATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTCAGAAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | CACTGTTTGATACCAGTTAAGGCCAGCAAAACAGAAGTGAGGGAAATATTGTATTTCTCTATCTCAAACTaGCCAGTCAGAAAAACTAAG | + |
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Preference number: 4 (lower is better) Translates to: HCLIPVKASKTEVREILYFSISN*PVRKTK Trigger: CTTAGTTTTTCTGACTGGCCAGTTTGAGATAGAGAA...ATACAATATTTCCCTCACTTCTGTTTTGCTGGCCTTAACTGGTATCAAACAGTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CCA 90 bp | CACTGTTTGATACCAGTTAAGGCCAGCAAAACAGAAGTGAGGGAAATATTGTATAGGTGGATCCAAATATaGAAACCTTATGACATCATG | + |
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Preference number: 4 (lower is better) Translates to: HCLIPVKASKTEVREILYRWIQI*KPYDIM Trigger: CATGATGTCATAAGGTTTCCATATTTGGATCCACCT...ATACAATATTTCCCTCACTTCTGTTTTGCTGGCCTTAACTGGTATCAAACAGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR TCA 90 bp | CCTTCTGAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATAAGAAGTTAGGAGACTTATCCTaGAACAGCTTCTTCAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: PSEMVTYLIQHYSNSNKKLGDLS*NSFFSK Trigger: TTTACTGAAGAAGCTGTTTCAGGATAAGTCTCCTAA...CTTCTTATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTCAGAAGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCCTTCCTCCTGCCGCCTaGGCGCCCTGCCCGCGACGG | + |
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Preference number: 5 (lower is better) Translates to: RKARWRGCLKSVTPTYMGLPPAA*APCPRR Trigger: CCGTCGCGGGCAGGGCGCCAAGGCGGCAGGAGGAAG...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CCA 90 bp | TTCTCTTCTCTGTCAGCGATGCGAACAGCTGACGGCCGCTCTTCCTaGAGCTCTATTGGCCGCTCGCCTTCCTCCTGCCGCCTTGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: FSSLSAMRTADGRSS*SSIGRSPSSCRLGA Trigger: GGCGCCAAGGCGGCAGGAGGAAGGCGAGCGGCCAATAGAGCTCCAGGAAGAGCGGCCGTCAGCTGTTCGCATCGCTGACAGAGAAGAGAA 63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCCTTCCTGGAGCTCTATaGGCCGCTCGCCTTCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: RKARWRGCLKSVTPTYMGLPGAL*AARLPP Trigger: AGGAGGAAGGCGAGCGGCCAATAGAGCTCCAGGAAG...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCAAGCCGGAGCTCCACTaGATTTGCACTGTTCAAAAA | + |
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Preference number: 5 (lower is better) Translates to: RKARWRGCLKSVTPTYMGKPELH*ICTVQK Trigger: TTTTTGAACAGTGCAAATCAAGTGGAGCTCCGGCTT...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | AGAAAGGCCAGGTGGAGGGGCTGCTTGAAATCGGTCACACCTACATACATGGGCCTTCAAAAGTCTCTCTaGGGAAATCACTTTGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: RKARWRGCLKSVTPTYMGLQKSL*GNHFAA Trigger: AGCAGCAAAGTGATTTCCCAAGAGAGACTTTTGAAG...GCCCATGTATGTAGGTGTGACCGATTTCAAGCAGCCCCTCCACCTGGCCTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS TCA 90 bp | AGATCCCAAAGTGCATTTCATTTCCTCAGCAACCCTCTGAGCAACTaGTATGGCGGCTACTTTTCGTGGCTGAGTCACACCAATCATACC | + |
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Preference number: 5 (lower is better) Translates to: RSQSAFHFLSNPLSN*YGGYFSWLSHTNHT Trigger: GGTATGATTGGTGTGACTCAGCCACGAAAAGTAGCCGCCATATCAGTTGCTCAGAGGGTTGCTGAGGAAATGAAATGCACTTTGGGATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CCA 90 bp | CCAAAGTGCATTTCATTTCCTCAGCAACCCTCTGAGCAACTGATATaGCGGCTACTTTTCGTGGCTGAGTCACACCAATCATACCATGTT | + |
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Preference number: 5 (lower is better) Translates to: PKCISFPQQPSEQLI*RLLFVAESHQSYHV Trigger: AACATGGTATGATTGGTGTGACTCAGCCACGAAAAGTAGCCGCCATATCAGTTGCTCAGAGGGTTGCTGAGGAAATGAAATGCACTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS GCA 90 bp | CTTGCATCTTCTCTCATTTCACGTCTAGCCACACTGCTCAAATCATaGGCATTAAGTTCATGCAACTTGGGTAGTAAGTCTCTCACCCAT | + |
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Preference number: 5 (lower is better) Translates to: LASSLISRLATLLKS*ALSSCNLGSKSLTH Trigger: ATGGGTGAGAGACTTACTACCCAAGTTGCATGAACTTAATGCGCATGATTTGAGCAGTGTGGCTAGACGTGAAATGAGAGAAGATGCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | CACAGGCTAGGAACAGCTGCTGACCACTTCCTTCTGATAGTACTGTCGGAAATAAAGGTATTTAGGGAGTaGAGTTGTTTTACCACTTCC | + |
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Preference number: 5 (lower is better) Translates to: HRLGTAADHFLLIVLSEIKVFRE*SCFTTS Trigger: GGAAGTGGTAAAACAACTCAACTCCCTAAATACCTT...TATTTCCGACAGTACTATCAGAAGGAAGTGGTCAGCAGCTGTTCCTAGCCTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | CACAGGCTAGGAACAGCTGCTGACCACTTCCTTCTGATAGTACTGTCGGAAATAATAATGACACTGAATTaGCTAAGATTTGGATCTCCC | + |
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Preference number: 5 (lower is better) Translates to: HRLGTAADHFLLIVLSEIIMTLN*LRFGSP Trigger: GGGAGATCCAAATCTTAGCAAATTCAGTGTCATTAT...TATTTCCGACAGTACTATCAGAAGGAAGTGGTCAGCAGCTGTTCCTAGCCTGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | TTTATAAATTCTGATTTGCTTTCGGCTCACAGGCTAGGAACAGCTGCTGACCACGGAGCTCCACTTGATTaGCACTGTTCAAAAATGACA | + |
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Preference number: 5 (lower is better) Translates to: FINSDLLSAHRLGTAADHGAPLD*HCSKMT Trigger: TGTCATTTTTGAACAGTGCAAATCAAGTGGAGCTCC...GTGGTCAGCAGCTGTTCCTAGCCTGTGAGCCGAAAGCAAATCAGAATTTATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | TTTATAAATTCTGATTTGCTTTCGGCTCACAGGCTAGGAACAGCTGCTGACCACTTAAGTTCATGCAACTaGGGTAGTAAGTCTCTCACC | + |
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Preference number: 5 (lower is better) Translates to: FINSDLLSAHRLGTAADHLSSCN*GSKSLT Trigger: GGTGAGAGACTTACTACCCAAGTTGCATGAACTTAA...GTGGTCAGCAGCTGTTCCTAGCCTGTGAGCCGAAAGCAAATCAGAATTTATAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | CACTGTTTGATACCAGTTAAGGCCAGCAAAACAGAAGTGAGGGAAATATTGTATGTCCTGGATTCTCTGTaGCTTTCTCTCAAGGAAGCG | + |
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Preference number: 5 (lower is better) Translates to: HCLIPVKASKTEVREILYVLDSL*LSLKEA Trigger: CGCTTCCTTGAGAGAAAGCAACAGAGAATCCAGGAC...ATACAATATTTCCCTCACTTCTGTTTTGCTGGCCTTAACTGGTATCAAACAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | TTTATAAATTCTGATTTGCTTTCGGCTCACAGGCTAGGAACAGCTGCTGACCACAAATATTCTCCTCTGTaGATCTGTTGTCATAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: FINSDLLSAHRLGTAADHKYSPL*ICCHRA Trigger: GGCTCTATGACAACAGATCAACAGAGGAGAATATTT...GTGGTCAGCAGCTGTTCCTAGCCTGTGAGCCGAAAGCAAATCAGAATTTATAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | CTTCTGATAGTACTGTCGGAAATAACTGGCAAAACAGAAGCACATTTCCTGGCTTTGATTGCTGTTTCCTaGGAGCTGCAATCATCAAAA | + |
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Preference number: 5 (lower is better) Translates to: LLIVLSEITGKTEAHFLALIAVS*ELQSSK Trigger: TTTTGATGATTGCAGCTCCAAGGAAACAGCAATCAA...AGCCAGGAAATGTGCTTCTGTTTTGCCAGTTATTTCCGACAGTACTATCAGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | TTTATAAATTCTGATTTGCTTTCGGCTCACAGGCTAGGAACAGCTGCTGACCACGCATCTGATATGGATTaGTCATCATTTCTTCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: FINSDLLSAHRLGTAADHASDMD*SSFLLC Trigger: GCAAAGAAGAAATGATGACAAATCCATATCAGATGC...GTGGTCAGCAGCTGTTCCTAGCCTGTGAGCCGAAAGCAAATCAGAATTTATAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | CTTCTGATAGTACTGTCGGAAATAACTGGCAAAACAGAAGCACATTTCCTGGCTATCATCAAAACGAACTaGGTATCCTACTTTAGATCC | + |
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Preference number: 5 (lower is better) Translates to: LLIVLSEITGKTEAHFLAIIKTN*VSYFRS Trigger: GGATCTAAAGTAGGATACCAAGTTCGTTTTGATGAT...AGCCAGGAAATGTGCTTCTGTTTTGCCAGTTATTTCCGACAGTACTATCAGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS-3UTR CAA 90 bp | CCTTCTGAAATGGTCACATACCTGATACAACACTATTCTAACAGCAATAAGAAGCCCATTCATAACGGATaGGGCACACAATTCTTGCAT | + |
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Preference number: 5 (lower is better) Translates to: PSEMVTYLIQHYSNSNKKPIHNG*GTQFLH Trigger: ATGCAAGAATTGTGTGCCCAATCCGTTATGAATGGG...CTTCTTATTGCTGTTAGAATAGTGTTGTATCAGGTATGTGACCATTTCAGAAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CCA 90 bp | TATTTGATTGCTGTTTCCTTGGAGCTGCAATCATCAAAACGAACTTaGTATCCTACTTTAGATCCCAAAGTGCATTTCATTTCCTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: YLIAVSLELQSSKRT*YPTLDPKVHFISSA Trigger: TGCTGAGGAAATGAAATGCACTTTGGGATCTAAAGTAGGATACCAAGTTCGTTTTGATGATTGCAGCTCCAAGGAAACAGCAATCAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CAA 72 bp | GGAGCTCTATTGGCCGCTCGCCTTCCTCCTGCCGCCTaGGCGCCCTGCCCGCGACGGCGGGAAACCGGGACA | + |
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Preference number: 6 (lower is better) Translates to: GALLAARLPPAA*APCPRRRETGT Trigger: TGTCCCGGTTTCCCGCCGTCGCGGGCAGGGCGCCAAGGCGGCAGGAGGAAGGCGAGCGGCCAATAGAGCTCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CCA 72 bp | GAGCTCTATTGGCCGCTCGCCTTCCTCCTGCCGCCTTaGCGCCCTGCCCGCGACGGCGGGAAACCGGGACAT | + |
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Preference number: 6 (lower is better) Translates to: ELYWPLAFLLPP*RPARDGGKPGH Trigger: ATGTCCCGGTTTCCCGCCGTCGCGGGCAGGGCGCCAAGGCGGCAGGAGGAAGGCGAGCGGCCAATAGAGCTC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS GCA 72 bp | TCTTCCTGGAGCTCTATTGGCCGCTCGCCTTCCTCCTaGCGCCTTGGCGCCCTGCCCGCGACGGCGGGAAAC | + |
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Preference number: 6 (lower is better) Translates to: SSWSSIGRSPSS*RLGALPATAGN Trigger: GTTTCCCGCCGTCGCGGGCAGGGCGCCAAGGCGGCAGGAGGAAGGCGAGCGGCCAATAGAGCTCCAGGAAGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CAA 90 bp | TGTCAGCGATGCGAACAGCTGACGGCCGCTCTTCCTGGAGCTCTATaGGCCGCTCGCCTTCCTCCTGCCGCCTTGGCGCCCTGCCCGCGA | + |
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Preference number: 6 (lower is better) Translates to: CQRCEQLTAALPGAL*AARLPPAALAPCPR Trigger: TCGCGGGCAGGGCGCCAAGGCGGCAGGAGGAAGGCGAGCGGCCAATAGAGCTCCAGGAAGAGCGGCCGTCAGCTGTTCGCATCGCTGACA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CAA 72 bp | TGCGAACAGCTGACGGCCGCTCTTCCTGGAGCTCTATaGGCCGCTCGCCTTCCTCCTGCCGCCTTGGCGCCC | + |
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Preference number: 6 (lower is better) Translates to: CEQLTAALPGAL*AARLPPAALAP Trigger: GGGCGCCAAGGCGGCAGGAGGAAGGCGAGCGGCCAATAGAGCTCCAGGAAGAGCGGCCGTCAGCTGTTCGCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CCA 72 bp | CTGTCAGCGATGCGAACAGCTGACGGCCGCTCTTCCTaGAGCTCTATTGGCCGCTCGCCTTCCTCCTGCCGC | + |
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Preference number: 6 (lower is better) Translates to: LSAMRTADGRSS*SSIGRSPSSCR Trigger: GCGGCAGGAGGAAGGCGAGCGGCCAATAGAGCTCCAGGAAGAGCGGCCGTCAGCTGTTCGCATCGCTGACAG 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS GCA 72 bp | CCTGTGATGTGCATCCTTTCTCTTCTCTGTCAGCGATaGGAACAGCTGACGGCCGCTCTTCCTGGAGCTCTA | + |
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Preference number: 6 (lower is better) Translates to: PVMCILSLLCQR*EQLTAALPGAL Trigger: TAGAGCTCCAGGAAGAGCGGCCGTCAGCTGTTCGCATCGCTGACAGAGAAGAGAAAGGATGCACATCACAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS TCA 72 bp | AGTGCATTTCATTTCCTCAGCAACCCTCTGAGCAACTaGTATGGCGGCTACTTTTCGTGGCTGAGTCACACC | + |
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Preference number: 6 (lower is better) Translates to: SAFHFLSNPLSN*YGGYFSWLSHT Trigger: GGTGTGACTCAGCCACGAAAAGTAGCCGCCATATCAGTTGCTCAGAGGGTTGCTGAGGAAATGAAATGCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS GCA 72 bp | TCCTTTAATGTGTCACTGTGGTCCTGGATTCTCTGTTaGTTTCTCTCAAGGAAGCGAGCCCGTGCATCTGAT | + |
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Preference number: 6 (lower is better) Translates to: SFNVSLWSWILC*FLSRKRARASD Trigger: ATCAGATGCACGGGCTCGCTTCCTTGAGAGAAAGCAACAGAGAATCCAGGACCACAGTGACACATTAAAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CCA 72 bp | ATTTCATTTCCTCAGCAACCCTCTGAGCAACTGATATaGCGGCTACTTTTCGTGGCTGAGTCACACCAATCA | + |
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Preference number: 6 (lower is better) Translates to: ISFPQQPSEQLI*RLLFVAESHQS Trigger: TGATTGGTGTGACTCAGCCACGAAAAGTAGCCGCCATATCAGTTGCTCAGAGGGTTGCTGAGGAAATGAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS TCA 72 bp | TATCCATTCAAGTTTGGTTTCCTGTTCATGAAGTGCTaGGGAAGGATGGATATGAACTGGACTTCCACGCCC | + |
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Preference number: 6 (lower is better) Translates to: YPFKFGFLFMKC*GRMDMNWTSTP Trigger: GGGCGTGGAAGTCCAGTTCATATCCATCCTTCCTCAGCACTTCATGAACAGGAAACCAAACTTGAATGGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS GCA 72 bp | GATGGATATGAACTGGACTTCCACGCCCATCCATTGTaGAAAATGTTCTGCCAACAGATCTTCGAGCAACAT | + |
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Preference number: 6 (lower is better) Translates to: DGYELDFHAHPL*KMFCQQIFEQH Trigger: ATGTTGCTCGAAGATCTGTTGGCAGAACATTTTGCACAATGGATGGGCGTGGAAGTCCAGTTCATATCCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CAA 72 bp | AAGGATGGATATGAACTGGACTTCCACGCCCATCCATaGTGCAAAATGTTCTGCCAACAGATCTTCGAGCAA | + |
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Preference number: 6 (lower is better) Translates to: KDGYELDFHAHP*CKMFCQQIFEQ Trigger: TTGCTCGAAGATCTGTTGGCAGAACATTTTGCACAATGGATGGGCGTGGAAGTCCAGTTCATATCCATCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS GCA 72 bp | TCTCTCATTTCACGTCTAGCCACACTGCTCAAATCATaGGCATTAAGTTCATGCAACTTGGGTAGTAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: SLISRLATLLKS*ALSSCNLGSKS Trigger: AGACTTACTACCCAAGTTGCATGAACTTAATGCGCATGATTTGAGCAGTGTGGCTAGACGTGAAATGAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CAA 90 bp | GTATTTGATTGCTGTTTCCTTGGAGCTGCAATCATCAAAACGAACTaGGTATCCTACTTTAGATCCCAAAGTGCATTTCATTTCCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: VFDCCFLGAAIIKTN*VSYFRSQSAFHFLS Trigger: GCTGAGGAAATGAAATGCACTTTGGGATCTAAAGTAGGATACCAAGTTCGTTTTGATGATTGCAGCTCCAAGGAAACAGCAATCAAATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS CAA 72 bp | CTCTCAAGGAAGCGAGCCCGTGCATCTGATATGGATTaGTCATCATTTCTTCTTTGCATTTTCTTTAGAACT | + |
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Preference number: 6 (lower is better) Translates to: LSRKRARASDMD*SSFLLCIFFRT Trigger: AGTTCTAAAGAAAATGCAAAGAAGAAATGATGACAAATCCATATCAGATGCACGGGCTCGCTTCCTTGAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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| CDS TCA 72 bp | AAAATGTTCTGCCAACAGATCTTCGAGCAACATTTTTaGAGTAGCCTGCACAAAGACATCTTCGTAGTACTT | + |
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Preference number: 6 (lower is better) Translates to: KMFCQQIFEQHF*SSLHKDIFVVL Trigger: AAGTACTACGAAGATGTCTTTGTGCAGGCTACTTCAAAAATGTTGCTCGAAGATCTGTTGGCAGAACATTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018569.14 |
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