RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DHTKD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025815

Ensembl transcript IDs: ENSMUST00000026924.7, ENSMUST00000095147.9

Found 256 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AACTTACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTaGCTCTGCCTCCCGAGTGCTGGGATTAAAGGCTGTGCCACCGCC +
Preference number: 1 (lower is better)
Translates to: NLLCRPGWPRTQKSA*LCLPSAGIKGCATA
Trigger: GGCGGTGGCACAGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTAAGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR TCA 90 bp GCTGGGATTAAAGGCTGTGCCACCGCCCGGCTGGTCGACCATTCTTaGTGGATGCTCATTACCAGCGTTAACTGGGCATGGTCGCACAAG +
Preference number: 1 (lower is better)
Translates to: AGIKGCATARLVDHS*WMLITSVNWAWSHK
Trigger: CTTGTGCGACCATGCCCAGTTAACGCTGGTAATGAGCATCCATCAAGAATGGTCGACCAGCCGGGCGGTGGCACAGCCTTTAATCCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR GCA 90 bp TTAAAGGCTGTGCCACCGCCCGGCTGGTCGACCATTCTTGATGGATaGTCATTACCAGCGTTAACTGGGCATGGTCGCACAAGTCTGCAG +
Preference number: 1 (lower is better)
Translates to: LKAVPPPGWSTILDG*SLPALTGHGRTSLQ
Trigger: CTGCAGACTTGTGCGACCATGCCCAGTTAACGCTGGTAATGAGCATCCATCAAGAATGGTCGACCAGCCGGGCGGTGGCACAGCCTTTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR GCA 90 bp ACTCAGAAGGCAGAGACAGAGAGACCTCTGAGTTCAAGACCAGCCTaGTCTACACAGAGAGTTCTAGGCCAGCCAGAACTATCTCAAAAA +
Preference number: 1 (lower is better)
Translates to: TQKAETERPLSSRPA*STQRVLGQPELSQK
Trigger: TTTTTGAGATAGTTCTGGCTGGCCTAGAACTCTCTGTGTAGAGCAGGCTGGTCTTGAACTCAGAGGTCTCTCTGTCTCTGCCTTCTGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR CCA 90 bp CTAGATTCAACCTCTATGGAACCCCACGTACCTGGTTTGGGAATGTaGCTAAAACTTAATGAAATTTATAGCCCAAATATACATCATATT +
Preference number: 1 (lower is better)
Translates to: LDSTSMEPHVPGLGM*LKLNEIYSPNIHHI
Trigger: AATATGATGTATATTTGGGCTATAAATTTCATTAAGTTTTAGCCACATTCCCAAACCAGGTACGTGGGGTTCCATAGAGGTTGAATCTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR-3UTR CCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTAGGGGAGGGGAGGGAATaGAGGAGCGCACTTTCTTCT +
Preference number: 2 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLGEGRE*RSALSS
Trigger: AGAAGAAAGTGCGCTCCTCCATTCCCTCCCCTCCCC...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR-3UTR CCA 90 bp AGTTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGGGGAGGGGAGGGAATaGAGGAGCGCACTTTCTTCT +
Preference number: 2 (lower is better)
Translates to: SYTVIVRPAWTTGDCMGTGEGRE*RSALSS
Trigger: AGAAGAAAGTGCGCTCCTCCATTCCCTCCCCTCCCC...TGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR-3UTR CCA 90 bp CACCTTAAATCCCAGCACTCAGAAGGCAGAGACAGAGAGACCTCTGAGTTCAAGAAATATCATAGCAGCTaGGCAGTGGTAGCGCACGTC +
Preference number: 2 (lower is better)
Translates to: HLKSQHSEGRDRETSEFKKYHSS*AVVAHV
Trigger: GACGTGCGCTACCACTGCCCAGCTGCTATGATATTT...CTTGAACTCAGAGGTCTCTCTGTCTCTGCCTTCTGAGTGCTGGGATTTAAGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR-3UTR CCA 90 bp CACCTTAAATCCCAGCACTCAGAAGGCAGAGACAGAGAGACCTCTGAGTTCAAGATTAGGGGCCAAGGCTaGAGCTCATTTGGTAGAGAG +
Preference number: 2 (lower is better)
Translates to: HLKSQHSEGRDRETSEFKIRGQG*SSFGRE
Trigger: CTCTCTACCAAATGAGCTCCAGCCTTGGCCCCTAAT...CTTGAACTCAGAGGTCTCTCTGTCTCTGCCTTCTGAGTGCTGGGATTTAAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR CAA 90 bp TATAGCCAGGACTGCCTACACATCAATGATGTAAAACATGGCGCATaGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCAGCCCTTCC +
Preference number: 2 (lower is better)
Translates to: YSQDCLHINDVKHGA*LVKLERQWMYSSPS
Trigger: GGAAGGGCTGGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTTTACATCATTGATGTGTAGGCAGTCCTGGCTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR CAA 90 bp ATTGCTGACCTTAAAAGGGAGGAAAGATATGGAAAGTTATGTGTATaGAACCAATTAAGAGGTAGTGTTGGGGCTGCCTATACACAGCCC +
Preference number: 2 (lower is better)
Translates to: IADLKREERYGKLCV*NQLRGSVGAAYTQP
Trigger: GGGCTGTGTATAGGCAGCCCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTCCCTTTTAAGGTCAGCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR-3UTR TCA 90 bp ATGGAACCCCACGTACCTGGTTTGGGAATGTGGCTAAAACTTAATGAAATTTATGCAGAGGTAAGAAGATaGGAAGTTCAAGGTGATCCT +
Preference number: 2 (lower is better)
Translates to: MEPHVPGLGMWLKLNEIYAEVRR*EVQGDP
Trigger: AGGATCACCTTGAACTTCTCATCTTCTTACCTCTGC...ATAAATTTCATTAAGTTTTAGCCACATTCCCAAACCAGGTACGTGGGGTTCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026924.7
3UTR-3UTR GCA 90 bp AAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCAGCCCTCATCATATTTGTACCTaGAGCTTTGAGAGACAAAAG +
Preference number: 2 (lower is better)
Translates to: KHGALLVKLERQWMYSSPHHICT*SFERQK
Trigger: CTTTTGTCTCTCAAAGCTGCAGGTACAAATATGATG...AGGGCTGGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR-3UTR TCA 90 bp ATGGAACCCCACGTACCTGGTTTGGGAATGTGGCTAAAACTTAATGAAATTTATTTGTACCTGCAGCTTTaGGAGACAAAAGTGATTAAC +
Preference number: 2 (lower is better)
Translates to: MEPHVPGLGMWLKLNEIYLYLQL*ETKVIN
Trigger: GTTAATCACTTTTGTCTCTCAAAGCTGCAGGTACAA...ATAAATTTCATTAAGTTTTAGCCACATTCCCAAACCAGGTACGTGGGGTTCCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR-3UTR CCA 90 bp GATGTAAAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCAACATGAATCCAGAATaGTCTAGTTTTAGTGGTATC +
Preference number: 2 (lower is better)
Translates to: DVKHGALLVKLERQWMYSNMNPE*SSFSGI
Trigger: GATACCACTAAAACTAGACCATTCTGGATTCATGTT...GGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTTTACATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR GCA 72 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTaGCTCTGCCTCCCGAGTGCTGGGATTAAAGGCTGT +
Preference number: 3 (lower is better)
Translates to: CRPGWPRTQKSA*LCLPSAGIKGC
Trigger: ACAGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR TCA 72 bp AAAGGCTGTGCCACCGCCCGGCTGGTCGACCATTCTTaGTGGATGCTCATTACCAGCGTTAACTGGGCATGG +
Preference number: 3 (lower is better)
Translates to: KGCATARLVDHS*WMLITSVNWAW
Trigger: CCATGCCCAGTTAACGCTGGTAATGAGCATCCATCAAGAATGGTCGACCAGCCGGGCGGTGGCACAGCCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR GCA 72 bp ACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTaGATGGGTACAGCGTTAGACGACCATACAATCAGC +
Preference number: 3 (lower is better)
Translates to: TVIVRPAWTTGD*MGTALDDHTIS
Trigger: GCTGATTGTATGGTCGTCTAACGCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR TCA 72 bp GTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTaGACCCGACTGCCTAATGACCCCCTCTTCCAGTTC +
Preference number: 3 (lower is better)
Translates to: VLCSFTGSYSGI*TRLPNDPLFQF
Trigger: GAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR GCA 72 bp CATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTaGCTAATGACCCCCTCTTCCAGTTCACTCACATCG +
Preference number: 3 (lower is better)
Translates to: HLQAVTVESEPD*LMTPSSSSLTS
Trigger: CGATGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR-3UTR CAA 90 bp CACCTTAAATCCCAGCACTCAGAAGGCAGAGACAGAGAGACCTCTGAGTTCAAGGTAAAACATGGCGCATaGCTGGTAAAATTGGAAAGG +
Preference number: 3 (lower is better)
Translates to: HLKSQHSEGRDRETSEFKVKHGA*LVKLER
Trigger: CCTTTCCAATTTTACCAGCAATGCGCCATGTTTTAC...CTTGAACTCAGAGGTCTCTCTGTCTCTGCCTTCTGAGTGCTGGGATTTAAGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR GCA 72 bp GCCAGTAAGTACAAAGTACTGCAACTAATACCCAGCTaGAGACAGGAGGGGACATGTCGTAGAAAGAAAGAG +
Preference number: 3 (lower is better)
Translates to: ASKYKVLQLIPS*RQEGTCRRKKE
Trigger: CTCTTTCTTTCTACGACATGTCCCCTCCTGTCTGCAGCTGGGTATTAGTTGCAGTACTTTGTACTTACTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR TCA 72 bp TGTCGTAAAGTCAGAATGGTACACAGTAGATGCTCCTaGGAACCAACTCAAGGGACGTCACATAGCTACCAT +
Preference number: 3 (lower is better)
Translates to: CRKVRMVHSRCS*EPTQGTSHSYH
Trigger: ATGGTAGCTATGTGACGTCCCTTGAGTTGGTTCTCAGGAGCATCTACTGTGTACCATTCTGACTTTACGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR CCA 72 bp AAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATaGATGTATTCCAGCCCTTCCTATGTCCCCATAACC +
Preference number: 3 (lower is better)
Translates to: KHGALLVKLERQ*MYSSPSYVPIT
Trigger: GGTTATGGGGACATAGGAAGGGCTGGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR-3UTR CAA 90 bp CCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAAGCATAACAAACACGTACTCCAGATTCAGTaGTTCAAATCAGTCCAGAAC +
Preference number: 3 (lower is better)
Translates to: PNDPLFQFTHIERKHNKHVLQIQ*FKSVQN
Trigger: GTTCTGGACTGATTTGAACAACTGAATCTGGAGTAC...GTGTTTGTTATGCTTTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR CCA 72 bp ATACCTCATAACTTAACATTTATTAGGGGCCAAGGCTaGAGCTCATTTGGTAGAGAGCTTGTCTACCATTCT +
Preference number: 3 (lower is better)
Translates to: IPHNLTFIRGQG*SSFGRELVYHS
Trigger: AGAATGGTAGACAAGCTCTCTACCAAATGAGCTCCAGCCTTGGCCCCTAATAAATGTTAAGTTATGAGGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR CCA 72 bp ACCTCTATGGAACCCCACGTACCTGGTTTGGGAATGTaGCTAAAACTTAATGAAATTTATAGCCCAAATATA +
Preference number: 3 (lower is better)
Translates to: TSMEPHVPGLGM*LKLNEIYSPNI
Trigger: TATATTTGGGCTATAAATTTCATTAAGTTTTAGCCACATTCCCAAACCAGGTACGTGGGGTTCCATAGAGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp AACGCAGACTTCCACGCTAAGCTAGGGGGAGGGGAGGGAATGGAGGAGCGCACTGCCCATCATGCTCTCTaGCCCTTCACCGCCGTATCT +
Preference number: 4 (lower is better)
Translates to: NADFHAKLGGGEGMEERTAHHAL*PFTAVS
Trigger: AGATACGGCGGTGAAGGGGCAGAGAGCATGATGGGC...AGTGCGCTCCTCCATTCCCTCCCCTCCCCCTAGCTTAGCGTGGAAGTCTGCGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp AACGCAGACTTCCACGCTAAGCTAGGGGGAGGGGAGGGAATGGAGGAGCGCACTTCAAGGACAATCCCCTaGCCGCAGAAGGAAGCGTCA +
Preference number: 4 (lower is better)
Translates to: NADFHAKLGGGEGMEERTSRTIP*PQKEAS
Trigger: TGACGCTTCCTTCTGCGGTCAGGGGATTGTCCTTGA...AGTGCGCTCCTCCATTCCCTCCCCTCCCCCTAGCTTAGCGTGGAAGTCTGCGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp AACGCAGACTTCCACGCTAAGCTAGGGGGAGGGGAGGGAATGGAGGAGCGCACTTTCTGCGGCTCCTCCTaGCTCCAGATGACATCTCGA +
Preference number: 4 (lower is better)
Translates to: NADFHAKLGGGEGMEERTFCGSS*LQMTSR
Trigger: TCGAGATGTCATCTGGAGTCAGGAGGAGCCGCAGAA...AGTGCGCTCCTCCATTCCCTCCCCTCCCCCTAGCTTAGCGTGGAAGTCTGCGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp ACAGTGGAATCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACAGCGGAGAGCTCTCCCTaGAGCTGCCACAGTGGCGGC +
Preference number: 4 (lower is better)
Translates to: TVESEPDCLMTPSSSSLTAESSP*SCHSGG
Trigger: GCCGCCACTGTGGCAGCTGCAGGGAGAGCTCTCCGC...TGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp TCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAGCGGAGAGCTCTCCCTaGAGCTGCCACAGTGGCGGC +
Preference number: 4 (lower is better)
Translates to: SEPDCLMTPSSSSLTSNEAESSP*SCHSGG
Trigger: GCCGCCACTGTGGCAGCTGCAGGGAGAGCTCTCCGC...TTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp AACGCAGACTTCCACGCTAAGCTAGGGGGAGGGGAGGGAATGGAGGAGCGCACTTCGGACCACTTCCTCTaGGCTGTCTCCATTGACATG +
Preference number: 4 (lower is better)
Translates to: NADFHAKLGGGEGMEERTSDHFL*AVSIDM
Trigger: CATGTCAATGGAGACAGCCCAGAGGAAGTGGTCCGA...AGTGCGCTCCTCCATTCCCTCCCCTCCCCCTAGCTTAGCGTGGAAGTCTGCGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp AACGCAGACTTCCACGCTAAGCTAGGGGGAGGGGAGGGAATGGAGGAGCGCACTTCCATCATAGCCATGTaGAAGGAGGATGACGAGGCC +
Preference number: 4 (lower is better)
Translates to: NADFHAKLGGGEGMEERTSIIAM*KEDDEA
Trigger: GGCCTCGTCATCCTCCTTCCACATGGCTATGATGGA...AGTGCGCTCCTCCATTCCCTCCCCTCCCCCTAGCTTAGCGTGGAAGTCTGCGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp ACAGTGGAATCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACAACACATGCTTCTGGCTaGACCAGGCCCTGCCAGCGG +
Preference number: 4 (lower is better)
Translates to: TVESEPDCLMTPSSSSLTTHASG*TRPCQR
Trigger: CCGCTGGCAGGGCCTGGTGCAGCCAGAAGCATGTGT...TGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp AACGCAGACTTCCACGCTAAGCTAGGGGGAGGGGAGGGAATGGAGGAGCGCACTCTGTCTCCATTGACATaGATGATGGCACAGCCTACG +
Preference number: 4 (lower is better)
Translates to: NADFHAKLGGGEGMEERTLSPLT*MMAQPT
Trigger: CGTAGGCTGTGCCATCATCCATGTCAATGGAGACAG...AGTGCGCTCCTCCATTCCCTCCCCTCCCCCTAGCTTAGCGTGGAAGTCTGCGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp AACGCAGACTTCCACGCTAAGCTAGGGGGAGGGGAGGGAATGGAGGAGCGCACTCAGCTGCAGGGTACCTaGGTAACATTTTTGGAGATG +
Preference number: 4 (lower is better)
Translates to: NADFHAKLGGGEGMEERTQLQGT*VTFLEM
Trigger: CATCTCCAAAAATGTTACTCAGGTACCCTGCAGCTG...AGTGCGCTCCTCCATTCCCTCCCCTCCCCCTAGCTTAGCGTGGAAGTCTGCGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CAGATTCAGTTGTTCAAATCAGTCCAGAACTTCAGGGGAACGCAGACTTCCACGAGCTCTCCCTGCAGCTaGCACAGTGGCGGCCGATGC +
Preference number: 4 (lower is better)
Translates to: QIQLFKSVQNFRGTQTSTSSPCS*HSGGRC
Trigger: GCATCGGCCGCCACTGTGGCAGCTGCAGGGAGAGCT...CGTGGAAGTCTGCGTTCCCCTGAAGTTCTGGACTGATTTGAACAACTGAATCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp TATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCGCCCGAGACTGCTGCCTaGCACGAGTTTTCCCTACAG +
Preference number: 4 (lower is better)
Translates to: YTVIVRPAWTTGDCMGTAPETAA*HEFSLQ
Trigger: CTGTAGGGAAAACTCGTGGCAGGCAGCAGTCTCGGG...CGCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTAACACATGCTTCTGGCTaGACCAGGCCCTGCCAGCGG +
Preference number: 4 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLTHASG*TRPCQR
Trigger: CCGCTGGCAGGGCCTGGTGCAGCCAGAAGCATGTGT...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAAGCATAACAAACACAGCTCTCCCTGCAGCTaGCACAGTGGCGGCCGATGC +
Preference number: 4 (lower is better)
Translates to: PNDPLFQFTHIERKHNKHSSPCS*HSGGRC
Trigger: GCATCGGCCGCCACTGTGGCAGCTGCAGGGAGAGCT...GTGTTTGTTATGCTTTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp TATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCGGCGTCACCGTGGACCTaGAGGCATATGACTTTGTCC +
Preference number: 4 (lower is better)
Translates to: YTVIVRPAWTTGDCMGTAASPWT*RHMTLS
Trigger: GGACAAAGTCATATGCCTGCAGGTCCACGGTGACGC...CGCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp TCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAACGACCTTCCTCTCTCTaGAGGAGTGGTGTAGCCCAG +
Preference number: 4 (lower is better)
Translates to: SEPDCLMTPSSSSLTSNERPSSL*RSGVAQ
Trigger: CTGGGCTACACCACTCCTGCAGAGAGAGGAAGGTCG...TTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp CACCTTAAATCCCAGCACTCAGAAGGCAGAGACAGAGAGACCTCTGAGTTCAAGCAGGGAAGAGAGGGTTaGTCTGGGCAGCTTTGTGGC +
Preference number: 4 (lower is better)
Translates to: HLKSQHSEGRDRETSEFKQGREG*SGQLCG
Trigger: GCCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTG...CTTGAACTCAGAGGTCTCTCTGTCTCTGCCTTCTGAGTGCTGGGATTTAAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp AACGCAGACTTCCACGCTAAGCTAGGGGGAGGGGAGGGAATGGAGGAGCGCACTGCTCCTCTAGTCGAATaGTGGCAAAATCATGTTTCT +
Preference number: 4 (lower is better)
Translates to: NADFHAKLGGGEGMEERTAPLVE*WQNHVS
Trigger: AGAAACATGATTTTGCCATCATTCGACTAGAGGAGC...AGTGCGCTCCTCCATTCCCTCCCCTCCCCCTAGCTTAGCGTGGAAGTCTGCGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp GACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCGCGTCACCGTGGACCTaGAGGCATATGACTTTGTCC +
Preference number: 4 (lower is better)
Translates to: DRSLLIYRQLQWNLNPTAASPWT*RHMTLS
Trigger: GGACAAAGTCATATGCCTGCAGGTCCACGGTGACGC...GGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTAATGACGAGGCCACTCTaGAGGAGCCACTTGGCCTCT +
Preference number: 4 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLMTRPL*RSHLAS
Trigger: AGAGGCCAAGTGGCTCCTGCAGAGTGGCCTCGTCAT...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp ACAGTGGAATCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATCGTGCTGCTGCTGGTaGACTGTGCCAATTCCTACC +
Preference number: 4 (lower is better)
Translates to: TVESEPDCLMTPSSSSLTSCCCW*TVPIPT
Trigger: GGTAGGAATTGGCACAGTGCACCAGCAGCAGCACGA...TGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp TTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCTCGTGCTGCTGCTGGTaGACTGTGCCAATTCCTACC +
Preference number: 4 (lower is better)
Translates to: LYSDCEASLDYRRLHGYSSCCCW*TVPIPT
Trigger: GGTAGGAATTGGCACAGTGCACCAGCAGCAGCACGA...GCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp ATCAGAAAATATCATAGCAGCTGGGCAGTGGTAGCGCACGTCTTTAATCCCAGCAGCCTGGCAAGGCCATaGTCAACTGAGGGGCGTGCA +
Preference number: 4 (lower is better)
Translates to: IRKYHSSWAVVAHVFNPSSLARP*STEGRA
Trigger: TGCACGCCCCTCAGTTGACCATGGCCTTGCCAGGCT...GCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGATATTTTCTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp GACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCACACTGTCACCAGCCTaGCAAGGCCATGGTCAACTG +
Preference number: 4 (lower is better)
Translates to: DRSLLIYRQLQWNLNPTATLSPA*QGHGQL
Trigger: CAGTTGACCATGGCCTTGCCAGGCTGGTGACAGTGT...GGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp ACAGTGGAATCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACACCACGGCCAACATCTTaGCCGCTCAGACGAACATTG +
Preference number: 4 (lower is better)
Translates to: TVESEPDCLMTPSSSSLTPRPTS*PLRRTL
Trigger: CAATGTTCGTCTGAGCGGCCAAGATGTTGGCCGTGG...TGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp ATCAGAAAATATCATAGCAGCTGGGCAGTGGTAGCGCACGTCTTTAATCCCAGCGGACCTGCAGGCATATaGCTTTGTCCCCAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: IRKYHSSWAVVAHVFNPSGPAGI*LCPQAE
Trigger: CTCAGCCTGGGGACAAAGTCATATGCCTGCAGGTCC...GCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGATATTTTCTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp ATCAGAAAATATCATAGCAGCTGGGCAGTGGTAGCGCACGTCTTTAATCCCAGCCAGGACAGCCTCTTCTaGCAGGGGGCTGTTGCTAAC +
Preference number: 4 (lower is better)
Translates to: IRKYHSSWAVVAHVFNPSQDSLF*QGAVAN
Trigger: GTTAGCAACAGCCCCCTGTCAGAAGAGGCTGTCCTG...GCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGATATTTTCTGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp ATCAGAAAATATCATAGCAGCTGGGCAGTGGTAGCGCACGTCTTTAATCCCAGCGCCCATCATGCTCTCTaGCCCTTCACCGCCGTATCT +
Preference number: 4 (lower is better)
Translates to: IRKYHSSWAVVAHVFNPSAHHAL*PFTAVS
Trigger: AGATACGGCGGTGAAGGGGCAGAGAGCATGATGGGC...GCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGATATTTTCTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp ATCAGAAAATATCATAGCAGCTGGGCAGTGGTAGCGCACGTCTTTAATCCCAGCATGACGAGGCCACTCTaGAGGAGCCACTTGGCCTCT +
Preference number: 4 (lower is better)
Translates to: IRKYHSSWAVVAHVFNPSMTRPL*RSHLAS
Trigger: AGAGGCCAAGTGGCTCCTGCAGAGTGGCCTCGTCAT...GCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGATATTTTCTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp TCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAATCCGACAAGATGAGTaGTCAGGCCCAGCTCCATCA +
Preference number: 4 (lower is better)
Translates to: SEPDCLMTPSSSSLTSNEIRQDE*SGPAPS
Trigger: TGATGGAGCTGGGCCTGAGCACTCATCTTGTCGGAT...TTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp ATCAGAAAATATCATAGCAGCTGGGCAGTGGTAGCGCACGTCTTTAATCCCAGCAATTCCTACCGCAGGTaGTGGCAAAGGGGGTCGGCT +
Preference number: 4 (lower is better)
Translates to: IRKYHSSWAVVAHVFNPSNSYRR*WQRGSA
Trigger: AGCCGACCCCCTTTGCCAGCACCTGCGGTAGGAATT...GCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGATATTTTCTGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp AACGCAGACTTCCACGCTAAGCTAGGGGGAGGGGAGGGAATGGAGGAGCGCACTGGTTTCGATAGAAATTaGGCCACAGTAGATATGGTT +
Preference number: 4 (lower is better)
Translates to: NADFHAKLGGGEGMEERTGFDRN*ATVDMV
Trigger: AACCATATCTACTGTGGCCCAATTTCTATCGAAACC...AGTGCGCTCCTCCATTCCCTCCCCTCCCCCTAGCTTAGCGTGGAAGTCTGCGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp GACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCACTGAGGAGGTCAGGTaGGACAGGACATCACCAATG +
Preference number: 4 (lower is better)
Translates to: DRSLLIYRQLQWNLNPTATEEVR*DRTSPM
Trigger: CATTGGTGATGTCCTGTCCCACCTGACCTCCTCAGT...GGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp GACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTCGGACCACTTCCTCTaGGCTGTCTCCATTGACATG +
Preference number: 4 (lower is better)
Translates to: DRSLLIYRQLQWNLNPTASDHFL*AVSIDM
Trigger: CATGTCAATGGAGACAGCCCAGAGGAAGTGGTCCGA...GGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTATCGGAAACCTCCTCCTaGGTCATGAGTCCACTGGCA +
Preference number: 4 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLSETSS*VMSPLA
Trigger: TGCCAGTGGACTCATGACCCAGGAGGAGGTTTCCGA...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CACCTTAAATCCCAGCACTCAGAAGGCAGAGACAGAGAGACCTCTGAGTTCAAGCCACGGCCAACATCTTaGCCGCTCAGACGAACATTG +
Preference number: 4 (lower is better)
Translates to: HLKSQHSEGRDRETSEFKPRPTS*PLRRTL
Trigger: CAATGTTCGTCTGAGCGGCCAAGATGTTGGCCGTGG...CTTGAACTCAGAGGTCTCTCTGTCTCTGCCTTCTGAGTGCTGGGATTTAAGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp TTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCTCCATCATAGCCATGTaGAAGGAGGATGACGAGGCC +
Preference number: 4 (lower is better)
Translates to: LYSDCEASLDYRRLHGYSSIIAM*KEDDEA
Trigger: GGCCTCGTCATCCTCCTTCCACATGGCTATGATGGA...GCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp CTGGTCAAAGACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACGTCACATGGAGGGGTTaGTGGGCACCGAAGTCTAGG +
Preference number: 4 (lower is better)
Translates to: LVKDRSLLIYRQLQWNLNVTWRG*WAPKSR
Trigger: CCTAGACTTCGGTGCCCATCAACCCCTCCATGTGAC...GTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTCTTTGACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp CTGGTCAAAGACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACGGACCTGCAGGCATATaGCTTTGTCCCCAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: LVKDRSLLIYRQLQWNLNGPAGI*LCPQAE
Trigger: CTCAGCCTGGGGACAAAGTCATATGCCTGCAGGTCC...GTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTCTTTGACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp ATCAGAAAATATCATAGCAGCTGGGCAGTGGTAGCGCACGTCTTTAATCCCAGCTCAAGGACAATCCCCTaGCCGCAGAAGGAAGCGTCA +
Preference number: 4 (lower is better)
Translates to: IRKYHSSWAVVAHVFNPSSRTIP*PQKEAS
Trigger: TGACGCTTCCTTCTGCGGTCAGGGGATTGTCCTTGA...GCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGATATTTTCTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp TATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCGAGCCCAGCTGGTTATTaGCAATTAGATGGATGCTCC +
Preference number: 4 (lower is better)
Translates to: YTVIVRPAWTTGDCMGTASPAGY*QLDGCS
Trigger: GGAGCATCCATCTAATTGTCAATAACCAGCTGGGCT...CGCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp ACAGTGGAATCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACACGCTCAGACGAACATTaGAACCTTGAGCGAGTAAGG +
Preference number: 4 (lower is better)
Translates to: TVESEPDCLMTPSSSSLTRSDEH*NLERVR
Trigger: CCTTACTCGCTCAAGGTTTCAATGTTCGTCTGAGCG...TGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp CAGATTCAGTTGTTCAAATCAGTCCAGAACTTCAGGGGAACGCAGACTTCCACGAAGAAATCGCCAAACTaGGCTTCCCAGAGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: QIQLFKSVQNFRGTQTSTKKSPN*ASQRGS
Trigger: GCTGCCCCTCTGGGAAGCTCAGTTTGGCGATTTCTT...CGTGGAAGTCTGCGTTCCCCTGAAGTTCTGGACTGATTTGAACAACTGAATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp TATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCGCAGCTGCAGGGTACCTaGGTAACATTTTTGGAGATG +
Preference number: 4 (lower is better)
Translates to: YTVIVRPAWTTGDCMGTAQLQGT*VTFLEM
Trigger: CATCTCCAAAAATGTTACTCAGGTACCCTGCAGCTG...CGCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp ACAGTGGAATCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACAAGCTCCGGAGGTAACTaGAGAAGGCCTGTCAACAAA +
Preference number: 4 (lower is better)
Translates to: TVESEPDCLMTPSSSSLTSSGGN*RRPVNK
Trigger: TTTGTTGACAGGCCTTCTGCAGTTACCTCCGGAGCT...TGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAAGCATAACAAACACAATTCCTACCGCAGGTaGTGGCAAAGGGGGTCGGCT +
Preference number: 4 (lower is better)
Translates to: PNDPLFQFTHIERKHNKHNSYRR*WQRGSA
Trigger: AGCCGACCCCCTTTGCCAGCACCTGCGGTAGGAATT...GTGTTTGTTATGCTTTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp ATCAGAAAATATCATAGCAGCTGGGCAGTGGTAGCGCACGTCTTTAATCCCAGCTCGGAAACCTCCTCCTaGGTCATGAGTCCACTGGCA +
Preference number: 4 (lower is better)
Translates to: IRKYHSSWAVVAHVFNPSSETSS*VMSPLA
Trigger: TGCCAGTGGACTCATGACCCAGGAGGAGGTTTCCGA...GCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGATATTTTCTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CAGATTCAGTTGTTCAAATCAGTCCAGAACTTCAGGGGAACGCAGACTTCCACGCACCTGCAGTTCCTCTaGAACCTCCACGGACTTCAC +
Preference number: 4 (lower is better)
Translates to: QIQLFKSVQNFRGTQTSTHLQFL*NLHGLH
Trigger: GTGAAGTCCGTGGAGGTTCCAGAGGAACTGCAGGTG...CGTGGAAGTCTGCGTTCCCCTGAAGTTCTGGACTGATTTGAACAACTGAATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp TCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAATCCAGAAAACCCTTCTaGTTGGGGTCCATGTGGTTC +
Preference number: 4 (lower is better)
Translates to: SEPDCLMTPSSSSLTSNESRKPF*LGSMWF
Trigger: GAACCACATGGACCCCAACCAGAAGGGTTTTCTGGA...TTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp CCCCTGTGTAGTCCATGTACTCCAGATTCAGTTGTTCAAATCAGTCCAGAACTTGTCACATGGAGGGGTTaGTGGGCACCGAAGTCTAGG +
Preference number: 4 (lower is better)
Translates to: PLCSPCTPDSVVQISPELVTWRG*WAPKSR
Trigger: CCTAGACTTCGGTGCCCATCAACCCCTCCATGTGAC...AAGTTCTGGACTGATTTGAACAACTGAATCTGGAGTACATGGACTACACAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp TCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAAGCCCAGCTGGTTATTaGCAATTAGATGGATGCTCC +
Preference number: 4 (lower is better)
Translates to: SEPDCLMTPSSSSLTSNESPAGY*QLDGCS
Trigger: GGAGCATCCATCTAATTGTCAATAACCAGCTGGGCT...TTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp ATCAGAAAATATCATAGCAGCTGGGCAGTGGTAGCGCACGTCTTTAATCCCAGCTTGCGGAACTGGCGCTaGTATTCAAAAGCCAGGCGT +
Preference number: 4 (lower is better)
Translates to: IRKYHSSWAVVAHVFNPSLRNWR*YSKARR
Trigger: ACGCCTGGCTTTTGAATATCAGCGCCAGTTCCGCAA...GCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGATATTTTCTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp CCCCTGTGTAGTCCATGTACTCCAGATTCAGTTGTTCAAATCAGTCCAGAACTTCTGTGTCCCAGGTGGTaGCACATGCTTCTGGCTGCA +
Preference number: 4 (lower is better)
Translates to: PLCSPCTPDSVVQISPELLCPRW*HMLLAA
Trigger: TGCAGCCAGAAGCATGTGTCACCACCTGGGACACAG...AAGTTCTGGACTGATTTGAACAACTGAATCTGGAGTACATGGACTACACAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp TTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCATCTGGGCAGCTTTGTaGCCATGCTCACAATACACT +
Preference number: 4 (lower is better)
Translates to: LYSDCEASLDYRRLHGYSIWAAL*PCSQYT
Trigger: AGTGTATTGTGAGCATGGCCACAAAGCTGCCCAGAT...GCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CACCTTAAATCCCAGCACTCAGAAGGCAGAGACAGAGAGACCTCTGAGTTCAAGGTCCGGACAAGAGCTTaGATTTCAGGCACAGTATCC +
Preference number: 4 (lower is better)
Translates to: HLKSQHSEGRDRETSEFKVRTRA*ISGTVS
Trigger: GGATACTGTGCCTGAAATCCAAGCTCTTGTCCGGAC...CTTGAACTCAGAGGTCTCTCTGTCTCTGCCTTCTGAGTGCTGGGATTTAAGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp TCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAACGTATCTCTTCACCGTaGCAAACTTGGTGGCCAAAA +
Preference number: 4 (lower is better)
Translates to: SEPDCLMTPSSSSLTSNERISSP*QTWWPK
Trigger: TTTTGGCCACCAAGTTTGCCACGGTGAAGAGATACG...TTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CAGATTCAGTTGTTCAAATCAGTCCAGAACTTCAGGGGAACGCAGACTTCCACGACTGAGGAGGTCAGGTaGGACAGGACATCACCAATG +
Preference number: 4 (lower is better)
Translates to: QIQLFKSVQNFRGTQTSTTEEVR*DRTSPM
Trigger: CATTGGTGATGTCCTGTCCCACCTGACCTCCTCAGT...CGTGGAAGTCTGCGTTCCCCTGAAGTTCTGGACTGATTTGAACAACTGAATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTACTGTCTCCATTGACATaGATGATGGCACAGCCTACG +
Preference number: 4 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLLSPLT*MMAQPT
Trigger: CGTAGGCTGTGCCATCATCCATGTCAATGGAGACAG...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CTGGTCAAAGACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCACCTGCAGTTCCTCTaGAACCTCCACGGACTTCAC +
Preference number: 4 (lower is better)
Translates to: LVKDRSLLIYRQLQWNLNHLQFL*NLHGLH
Trigger: GTGAAGTCCGTGGAGGTTCCAGAGGAACTGCAGGTG...GTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTCTTTGACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CACCTTAAATCCCAGCACTCAGAAGGCAGAGACAGAGAGACCTCTGAGTTCAAGTCCAGAAAACCCTTCTaGTTGGGGTCCATGTGGTTC +
Preference number: 4 (lower is better)
Translates to: HLKSQHSEGRDRETSEFKSRKPF*LGSMWF
Trigger: GAACCACATGGACCCCAACCAGAAGGGTTTTCTGGA...CTTGAACTCAGAGGTCTCTCTGTCTCTGCCTTCTGAGTGCTGGGATTTAAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp GACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTATACCGCCATAGGCTaGCAATTTCAGCAACTCATG +
Preference number: 4 (lower is better)
Translates to: DRSLLIYRQLQWNLNPTAYTAIG*QFQQLM
Trigger: CATGAGTTGCTGAAATTGTCAGCCTATGGCGGTATA...GGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTAGAGAAGCTGCTTCTTTaGCCAGGTTTAACAGTCCTG +
Preference number: 4 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLEKLLL*PGLTVL
Trigger: CAGGACTGTTAAACCTGGGCAAAGAAGCAGCTTCTC...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTAGTCCACACCTTCTTCTaGACTATCGCACATCTGCAA +
Preference number: 4 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLVHTFF*TIAHLQ
Trigger: TTGCAGATGTGCGATAGTGCAGAAGAAGGTGTGGAC...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CACCTTAAATCCCAGCACTCAGAAGGCAGAGACAGAGAGACCTCTGAGTTCAAGGTCCACACCTTCTTCTaGACTATCGCACATCTGCAA +
Preference number: 4 (lower is better)
Translates to: HLKSQHSEGRDRETSEFKVHTFF*TIAHLQ
Trigger: TTGCAGATGTGCGATAGTGCAGAAGAAGGTGTGGAC...CTTGAACTCAGAGGTCTCTCTGTCTCTGCCTTCTGAGTGCTGGGATTTAAGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CCCCTGTGTAGTCCATGTACTCCAGATTCAGTTGTTCAAATCAGTCCAGAACTTACACTGTCACCAGCCTaGCAAGGCCATGGTCAACTG +
Preference number: 4 (lower is better)
Translates to: PLCSPCTPDSVVQISPELTLSPA*QGHGQL
Trigger: CAGTTGACCATGGCCTTGCCAGGCTGGTGACAGTGT...AAGTTCTGGACTGATTTGAACAACTGAATCTGGAGTACATGGACTACACAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAAGCATAACAAACACCTCTCTCTGCAGGAGTaGTGTAGCCCAGCTGGTTAT +
Preference number: 4 (lower is better)
Translates to: PNDPLFQFTHIERKHNKHLSLQE*CSPAGY
Trigger: ATAACCAGCTGGGCTACACCACTCCTGCAGAGAGAG...GTGTTTGTTATGCTTTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR CAA 72 bp CAGTTCCCCTGTGTAGTCCATGTACTCCAGATTCAGTaGTTCAAATCAGTCCAGAACTTCAGGGGAACGCAG +
Preference number: 4 (lower is better)
Translates to: QFPCVVHVLQIQ*FKSVQNFRGTQ
Trigger: CTGCGTTCCCCTGAAGTTCTGGACTGATTTGAACAACTGAATCTGGAGTACATGGACTACACAGGGGAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp CACCTTAAATCCCAGCACTCAGAAGGCAGAGACAGAGAGACCTCTGAGTTCAAGTATACCGCCATAGGCTaGCAATTTCAGCAACTCATG +
Preference number: 4 (lower is better)
Translates to: HLKSQHSEGRDRETSEFKYTAIG*QFQQLM
Trigger: CATGAGTTGCTGAAATTGTCAGCCTATGGCGGTATA...CTTGAACTCAGAGGTCTCTCTGTCTCTGCCTTCTGAGTGCTGGGATTTAAGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp ACAGTGGAATCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACAGCTCCTCTAGTCGAATaGTGGCAAAATCATGTTTCT +
Preference number: 4 (lower is better)
Translates to: TVESEPDCLMTPSSSSLTAPLVE*WQNHVS
Trigger: AGAAACATGATTTTGCCATCATTCGACTAGAGGAGC...TGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp GATGTAAAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCCGACCTTCCTCTCTCTaGAGGAGTGGTGTAGCCCAG +
Preference number: 4 (lower is better)
Translates to: DVKHGALLVKLERQWMYSRPSSL*RSGVAQ
Trigger: CTGGGCTACACCACTCCTGCAGAGAGAGGAAGGTCG...GGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTTTACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTACAACAATCACATCCTTaGGGAACTGGCGCTGATATT +
Preference number: 4 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLQQSHP*GTGADI
Trigger: AATATCAGCGCCAGTTCCGCAAGGATGTGATTGTTG...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAAGCATAACAAACACGGCAATGAGGTGCTCTaGGTAGGTATCAGGAATGCT +
Preference number: 4 (lower is better)
Translates to: PNDPLFQFTHIERKHNKHGNEVL*VGIRNA
Trigger: AGCATTCCTGATACCTACGCAGAGCACCTCATTGCC...GTGTTTGTTATGCTTTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CCCCTGTGTAGTCCATGTACTCCAGATTCAGTTGTTCAAATCAGTCCAGAACTTATCCGACAAGATGAGTaGTCAGGCCCAGCTCCATCA +
Preference number: 4 (lower is better)
Translates to: PLCSPCTPDSVVQISPELIRQDE*SGPAPS
Trigger: TGATGGAGCTGGGCCTGAGCACTCATCTTGTCGGAT...AAGTTCTGGACTGATTTGAACAACTGAATCTGGAGTACATGGACTACACAGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CAGATTCAGTTGTTCAAATCAGTCCAGAACTTCAGGGGAACGCAGACTTCCACGTCACCGTGGCAAACTTaGTGGCCAAAAAGTGGTCAA +
Preference number: 4 (lower is better)
Translates to: QIQLFKSVQNFRGTQTSTSPWQT*WPKSGQ
Trigger: TTGACCACTTTTTGGCCACCAAGTTTGCCACGGTGA...CGTGGAAGTCTGCGTTCCCCTGAAGTTCTGGACTGATTTGAACAACTGAATCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp ATCAGAAAATATCATAGCAGCTGGGCAGTGGTAGCGCACGTCTTTAATCCCAGCTTCAACCTCCCTCTATaGGGCATCCCGATAATGATG +
Preference number: 4 (lower is better)
Translates to: IRKYHSSWAVVAHVFNPSFNLPL*GIPIMM
Trigger: CATCATTATCGGGATGCCCCATAGAGGGAGGTTGAA...GCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGATATTTTCTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CCCCTGTGTAGTCCATGTACTCCAGATTCAGTTGTTCAAATCAGTCCAGAACTTGCATCATCAGTGTCCTaGCAAACCACCATGGCATGC +
Preference number: 4 (lower is better)
Translates to: PLCSPCTPDSVVQISPELASSVS*QTTMAC
Trigger: GCATGCCATGGTGGTTTGCCAGGACACTGATGATGC...AAGTTCTGGACTGATTTGAACAACTGAATCTGGAGTACATGGACTACACAGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp TCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAGTGTCAAAGATGATCTaGGCTCCATTGAAGAAATCG +
Preference number: 4 (lower is better)
Translates to: SEPDCLMTPSSSSLTSNEVSKMI*APLKKS
Trigger: CGATTTCTTCAATGGAGCCCAGATCATCTTTGACAC...TTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp ACAGTGGAATCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATTTGAATGCTGTTCCTaGTGCCATTTCCTCAAGAGT +
Preference number: 4 (lower is better)
Translates to: TVESEPDCLMTPSSSSLTFECCS*CHFLKS
Trigger: ACTCTTGAGGAAATGGCACCAGGAACAGCATTCAAA...TGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp ATGGAACCCCACGTACCTGGTTTGGGAATGTGGCTAAAACTTAATGAAATTTATCAGGGAAGAGAGGGTTaGTCTGGGCAGCTTTGTGGC +
Preference number: 4 (lower is better)
Translates to: MEPHVPGLGMWLKLNEIYQGREG*SGQLCG
Trigger: GCCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTG...ATAAATTTCATTAAGTTTTAGCCACATTCCCAAACCAGGTACGTGGGGTTCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTATTCGTTCTTCTGTGGTaGACGTCTCCTTTTTCAGTT +
Preference number: 4 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLFVLLW*TSPFSV
Trigger: AACTGAAAAAGGAGACGTTCACCACAGAAGAACGAA...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp AGTTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACATTCGTTCTTCTGTGGTaGACGTCTCCTTTTTCAGTT +
Preference number: 4 (lower is better)
Translates to: SYTVIVRPAWTTGDCMGTFVLLW*TSPFSV
Trigger: AACTGAAAAAGGAGACGTTCACCACAGAAGAACGAA...TGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp GAAAGGCAATGGATGTATTCCAGCCCTTCCTATGTCCCCATAACCTTTTTAAAAAAGAAATCGCCAAACTaGGCTTCCCAGAGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: ERQWMYSSPSYVPITFLKKKSPN*ASQRGS
Trigger: GCTGCCCCTCTGGGAAGCTCAGTTTGGCGATTTCTT...TTTTAAAAAGGTTATGGGGACATAGGAAGGGCTGGAATACATCCATTGCCTTTC
47% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp CCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAAGCATAACAAACACCTTGGCCTCTCCTCCTaGGATGAATGTGTCAAAGAT +
Preference number: 4 (lower is better)
Translates to: PNDPLFQFTHIERKHNKHLGLSS*DECVKD
Trigger: ATCTTTGACACATTCATCTCAGGAGGAGAGGCCAAG...GTGTTTGTTATGCTTTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp GATGTAAAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCTTCTGCGGCTCCTCCTaGCTCCAGATGACATCTCGA +
Preference number: 4 (lower is better)
Translates to: DVKHGALLVKLERQWMYSFCGSS*LQMTSR
Trigger: TCGAGATGTCATCTGGAGTCAGGAGGAGCCGCAGAA...GGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTTTACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CAGATTCAGTTGTTCAAATCAGTCCAGAACTTCAGGGGAACGCAGACTTCCACGACGTGGGGCTTTCGATaGTCATCCCATATTCAAATC +
Preference number: 4 (lower is better)
Translates to: QIQLFKSVQNFRGTQTSTTWGFR*SSHIQI
Trigger: GATTTGAATATGGGATGAGCATCGAAAGCCCCACGT...CGTGGAAGTCTGCGTTCCCCTGAAGTTCTGGACTGATTTGAACAACTGAATCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp GAGGAAAGATATGGAAAGTTATGTGTATTGAACCAATTAAGAGGTAGTGTTGGGAGCCTGGCAAGGCCATaGTCAACTGAGGGGCGTGCA +
Preference number: 4 (lower is better)
Translates to: EERYGKLCVLNQLRGSVGSLARP*STEGRA
Trigger: TGCACGCCCCTCAGTTGACCATGGCCTTGCCAGGCT...CCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CCCCTGTGTAGTCCATGTACTCCAGATTCAGTTGTTCAAATCAGTCCAGAACTTGTCCGGACAAGAGCTTaGATTTCAGGCACAGTATCC +
Preference number: 4 (lower is better)
Translates to: PLCSPCTPDSVVQISPELVRTRA*ISGTVS
Trigger: GGATACTGTGCCTGAAATCCAAGCTCTTGTCCGGAC...AAGTTCTGGACTGATTTGAACAACTGAATCTGGAGTACATGGACTACACAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTAAATTTCAGCAACTCATaGAAAAAGCCCATCATGCTC +
Preference number: 4 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLNFSNS*KKPIML
Trigger: GAGCATGATGGGCTTTTTTCATGAGTTGCTGAAATT...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp GAGGAAAGATATGGAAAGTTATGTGTATTGAACCAATTAAGAGGTAGTGTTGGGCCCGAGACTGCTGCCTaGCACGAGTTTTCCCTACAG +
Preference number: 4 (lower is better)
Translates to: EERYGKLCVLNQLRGSVGPETAA*HEFSLQ
Trigger: CTGTAGGGAAAACTCGTGGCAGGCAGCAGTCTCGGG...CCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAAGCATAACAAACACACGTGGGGCTTTCGATaGTCATCCCATATTCAAATC +
Preference number: 4 (lower is better)
Translates to: PNDPLFQFTHIERKHNKHTWGFR*SSHIQI
Trigger: GATTTGAATATGGGATGAGCATCGAAAGCCCCACGT...GTGTTTGTTATGCTTTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTAAAGTTCCGAATCATCTaGCTTCTTAGCAAATGGAAG +
Preference number: 4 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLKFRII*LLSKWK
Trigger: CTTCCATTTGCTAAGAAGGCAGATGATTCGGAACTT...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp GACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCACCAATTCTGAAGTGTaGAAGATTAGAGAGTGTGAA +
Preference number: 4 (lower is better)
Translates to: DRSLLIYRQLQWNLNPTATNSEV*KIRECE
Trigger: TTCACACTCTCTAATCTTCCACACTTCAGAATTGGT...GGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CCCCTGTGTAGTCCATGTACTCCAGATTCAGTTGTTCAAATCAGTCCAGAACTTAGAAACAAAAGACCATaGACCCATGTTCTGCGGCTC +
Preference number: 4 (lower is better)
Translates to: PLCSPCTPDSVVQISPELRNKRP*THVLRL
Trigger: GAGCCGCAGAACATGGGTCCATGGTCTTTTGTTTCT...AAGTTCTGGACTGATTTGAACAACTGAATCTGGAGTACATGGACTACACAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp GATGTAAAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCAGCTCCGGAGGTAACTaGAGAAGGCCTGTCAACAAA +
Preference number: 4 (lower is better)
Translates to: DVKHGALLVKLERQWMYSSSGGN*RRPVNK
Trigger: TTTGTTGACAGGCCTTCTGCAGTTACCTCCGGAGCT...GGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTTTACATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CAGATTCAGTTGTTCAAATCAGTCCAGAACTTCAGGGGAACGCAGACTTCCACGGGTTTCGATAGAAATTaGGCCACAGTAGATATGGTT +
Preference number: 4 (lower is better)
Translates to: QIQLFKSVQNFRGTQTSTGFDRN*ATVDMV
Trigger: AACCATATCTACTGTGGCCCAATTTCTATCGAAACC...CGTGGAAGTCTGCGTTCCCCTGAAGTTCTGGACTGATTTGAACAACTGAATCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp ATGGAACCCCACGTACCTGGTTTGGGAATGTGGCTAAAACTTAATGAAATTTATCTCTCTCTGCAGGAGTaGTGTAGCCCAGCTGGTTAT +
Preference number: 4 (lower is better)
Translates to: MEPHVPGLGMWLKLNEIYLSLQE*CSPAGY
Trigger: ATAACCAGCTGGGCTACACCACTCCTGCAGAGAGAG...ATAAATTTCATTAAGTTTTAGCCACATTCCCAAACCAGGTACGTGGGGTTCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp CCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCTAACTCTAGCAATAGTTTaGACAGGTATTTTCGTTCTT +
Preference number: 4 (lower is better)
Translates to: PFSAHLQAVTVESEPDCLTLAIV*TGIFVL
Trigger: AAGAACGAAAATACCTGTCCAAACTATTGCTAGAGT...TAGGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp AGTTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAACTCTAGCAATAGTTTaGACAGGTATTTTCGTTCTT +
Preference number: 4 (lower is better)
Translates to: SYTVIVRPAWTTGDCMGTTLAIV*TGIFVL
Trigger: AAGAACGAAAATACCTGTCCAAACTATTGCTAGAGT...TGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp GAAAGGCAATGGATGTATTCCAGCCCTTCCTATGTCCCCATAACCTTTTTAAAACGTATCTCTTCACCGTaGCAAACTTGGTGGCCAAAA +
Preference number: 4 (lower is better)
Translates to: ERQWMYSSPSYVPITFLKRISSP*QTWWPK
Trigger: TTTTGGCCACCAAGTTTGCCACGGTGAAGAGATACG...TTTTAAAAAGGTTATGGGGACATAGGAAGGGCTGGAATACATCCATTGCCTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp GAGGAAAGATATGGAAAGTTATGTGTATTGAACCAATTAAGAGGTAGTGTTGGGGCATCATCAGTGTCCTaGCAAACCACCATGGCATGC +
Preference number: 4 (lower is better)
Translates to: EERYGKLCVLNQLRGSVGASSVS*QTTMAC
Trigger: GCATGCCATGGTGGTTTGCCAGGACACTGATGATGC...CCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp CTGGTCAAAGACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACTTCTCCATTCTTGACTaGACATACATCTTTAGAAGG +
Preference number: 4 (lower is better)
Translates to: LVKDRSLLIYRQLQWNLNFSILD*TYIFRR
Trigger: CCTTCTAAAGATGTATGTTCAGTCAAGAATGGAGAA...GTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTCTTTGACCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp GAGGAAAGATATGGAAAGTTATGTGTATTGAACCAATTAAGAGGTAGTGTTGGGCGCTCAGACGAACATTaGAACCTTGAGCGAGTAAGG +
Preference number: 4 (lower is better)
Translates to: EERYGKLCVLNQLRGSVGRSDEH*NLERVR
Trigger: CCTTACTCGCTCAAGGTTTCAATGTTCGTCTGAGCG...CCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp ATGGAACCCCACGTACCTGGTTTGGGAATGTGGCTAAAACTTAATGAAATTTATCTTGGCCTCTCCTCCTaGGATGAATGTGTCAAAGAT +
Preference number: 4 (lower is better)
Translates to: MEPHVPGLGMWLKLNEIYLGLSS*DECVKD
Trigger: ATCTTTGACACATTCATCTCAGGAGGAGAGGCCAAG...ATAAATTTCATTAAGTTTTAGCCACATTCCCAAACCAGGTACGTGGGGTTCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp GAGGAAAGATATGGAAAGTTATGTGTATTGAACCAATTAAGAGGTAGTGTTGGGGGCAATGAGGTGCTCTaGGTAGGTATCAGGAATGCT +
Preference number: 4 (lower is better)
Translates to: EERYGKLCVLNQLRGSVGGNEVL*VGIRNA
Trigger: AGCATTCCTGATACCTACGCAGAGCACCTCATTGCC...CCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp ATGGAACCCCACGTACCTGGTTTGGGAATGTGGCTAAAACTTAATGAAATTTATCCGTGGCAAACTTGGTaGCCAAAAAGTGGTCAAACT +
Preference number: 4 (lower is better)
Translates to: MEPHVPGLGMWLKLNEIYPWQTW*PKSGQT
Trigger: AGTTTGACCACTTTTTGGCCACCAAGTTTGCCACGG...ATAAATTTCATTAAGTTTTAGCCACATTCCCAAACCAGGTACGTGGGGTTCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR CAA 72 bp GACTGCCTACACATCAATGATGTAAAACATGGCGCATaGCTGGTAAAATTGGAAAGGCAATGGATGTATTCC +
Preference number: 4 (lower is better)
Translates to: DCLHINDVKHGA*LVKLERQWMYS
Trigger: GGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTTTACATCATTGATGTGTAGGCAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp GAGGAAAGATATGGAAAGTTATGTGTATTGAACCAATTAAGAGGTAGTGTTGGGCCGTGGCAAACTTGGTaGCCAAAAAGTGGTCAAACT +
Preference number: 4 (lower is better)
Translates to: EERYGKLCVLNQLRGSVGPWQTW*PKSGQT
Trigger: AGTTTGACCACTTTTTGGCCACCAAGTTTGCCACGG...CCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp GAGGAAAGATATGGAAAGTTATGTGTATTGAACCAATTAAGAGGTAGTGTTGGGTCACCGTGGCAAACTTaGTGGCCAAAAAGTGGTCAA +
Preference number: 4 (lower is better)
Translates to: EERYGKLCVLNQLRGSVGSPWQT*WPKSGQ
Trigger: TTGACCACTTTTTGGCCACCAAGTTTGCCACGGTGA...CCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp AAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCAGCCCTACCAATTCTGAAGTGTaGAAGATTAGAGAGTGTGAA +
Preference number: 4 (lower is better)
Translates to: KHGALLVKLERQWMYSSPTNSEV*KIRECE
Trigger: TTCACACTCTCTAATCTTCCACACTTCAGAATTGGT...AGGGCTGGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp GAAAGGCAATGGATGTATTCCAGCCCTTCCTATGTCCCCATAACCTTTTTAAAATTTGAATGCTGTTCCTaGTGCCATTTCCTCAAGAGT +
Preference number: 4 (lower is better)
Translates to: ERQWMYSSPSYVPITFLKFECCS*CHFLKS
Trigger: ACTCTTGAGGAAATGGCACCAGGAACAGCATTCAAA...TTTTAAAAAGGTTATGGGGACATAGGAAGGGCTGGAATACATCCATTGCCTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp GAGGAAAGATATGGAAAGTTATGTGTATTGAACCAATTAAGAGGTAGTGTTGGGAGAAACAAAAGACCATaGACCCATGTTCTGCGGCTC +
Preference number: 4 (lower is better)
Translates to: EERYGKLCVLNQLRGSVGRNKRP*THVLRL
Trigger: GAGCCGCAGAACATGGGTCCATGGTCTTTTGTTTCT...CCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp GAGGAAAGATATGGAAAGTTATGTGTATTGAACCAATTAAGAGGTAGTGTTGGGCAACAATCACATCCTTaGGGAACTGGCGCTGATATT +
Preference number: 4 (lower is better)
Translates to: EERYGKLCVLNQLRGSVGQQSHP*GTGADI
Trigger: AATATCAGCGCCAGTTCCGCAAGGATGTGATTGTTG...CCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR GCA 90 bp GAAAGGCAATGGATGTATTCCAGCCCTTCCTATGTCCCCATAACCTTTTTAAAAAAGTTCCGAATCATCTaGCTTCTTAGCAAATGGAAG +
Preference number: 4 (lower is better)
Translates to: ERQWMYSSPSYVPITFLKKFRII*LLSKWK
Trigger: CTTCCATTTGCTAAGAAGGCAGATGATTCGGAACTT...TTTTAAAAAGGTTATGGGGACATAGGAAGGGCTGGAATACATCCATTGCCTTTC
40% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CCA 90 bp ATGGAACCCCACGTACCTGGTTTGGGAATGTGGCTAAAACTTAATGAAATTTATGTGTCAAAGATGATCTaGGCTCCATTGAAGAAATCG +
Preference number: 4 (lower is better)
Translates to: MEPHVPGLGMWLKLNEIYVSKMI*APLKKS
Trigger: CGATTTCTTCAATGGAGCCCAGATCATCTTTGACAC...ATAAATTTCATTAAGTTTTAGCCACATTCCCAAACCAGGTACGTGGGGTTCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR CAA 72 bp CTAGATTCAACCTCTATGGAACCCCACGTACCTGGTTaGGGAATGTGGCTAAAACTTAATGAAATTTATAGC +
Preference number: 4 (lower is better)
Translates to: LDSTSMEPHVPG*GMWLKLNEIYS
Trigger: GCTATAAATTTCATTAAGTTTTAGCCACATTCCCAAACCAGGTACGTGGGGTTCCATAGAGGTTGAATCTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
3UTR CAA 72 bp ATCAATGATGTAAAACATGGCGCATTGCTGGTAAAATaGGAAAGGCAATGGATGTATTCCAGCCCTTCCTAT +
Preference number: 4 (lower is better)
Translates to: INDVKHGALLVK*ERQWMYSSPSY
Trigger: ATAGGAAGGGCTGGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTTTACATCATTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
3UTR CAA 72 bp CTTAAAAGGGAGGAAAGATATGGAAAGTTATGTGTATaGAACCAATTAAGAGGTAGTGTTGGGGCTGCCTAT +
Preference number: 4 (lower is better)
Translates to: LKREERYGKLCV*NQLRGSVGAAY
Trigger: ATAGGCAGCCCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTCCCTTTTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR TCA 90 bp GAGGAAAGATATGGAAAGTTATGTGTATTGAACCAATTAAGAGGTAGTGTTGGGTTCTCCATTCTTGACTaGACATACATCTTTAGAAGG +
Preference number: 4 (lower is better)
Translates to: EERYGKLCVLNQLRGSVGFSILD*TYIFRR
Trigger: CCTTCTAAAGATGTATGTTCAGTCAAGAATGGAGAA...CCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp TTGTGGCCATGCTCACAATACACTGTCACCAGCCTGGCAAGGCCATaGTCAACTGAGGGGCGTGCACGGTCGCCTCGAGGCTCTCCGCTC +
Preference number: 5 (lower is better)
Translates to: LWPCSQYTVTSLARP*STEGRARSPRGSPL
Trigger: GAGCGGAGAGCCTCGAGGCGACCGTGCACGCCCCTCAGTTGACCATGGCCTTGCCAGGCTGGTGACAGTGTATTGTGAGCATGGCCACAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 90 bp GTCTTCGTGCTGCTGCTGGTGCACTGTGCCAATTCCTACCGCAGGTaGTGGCAAAGGGGGTCGGCTTACAAGACGGAGCCTGCAAGCCAG +
Preference number: 5 (lower is better)
Translates to: VFVLLLVHCANSYRR*WQRGSAYKTEPASQ
Trigger: CTGGCTTGCAGGCTCCGTCTTGTAAGCCGACCCCCTTTGCCAGCACCTGCGGTAGGAATTGGCACAGTGCACCAGCAGCAGCACGAAGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp TCTGGGCAGCTTTGTGGCCATGCTCACAATACACTGTCACCAGCCTaGCAAGGCCATGGTCAACTGAGGGGCGTGCACGGTCGCCTCGAG +
Preference number: 5 (lower is better)
Translates to: SGQLCGHAHNTLSPA*QGHGQLRGVHGRLE
Trigger: CTCGAGGCGACCGTGCACGCCCCTCAGTTGACCATGGCCTTGCCAGGCTGGTGACAGTGTATTGTGAGCATGGCCACAAAGCTGCCCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 90 bp ATGCTCACAATACACTGTCACCAGCCTGGCAAGGCCATGGTCAACTaGGGGGCGTGCACGGTCGCCTCGAGGCTCTCCGCTCTTGGCTTT +
Preference number: 5 (lower is better)
Translates to: MLTIHCHQPGKAMVN*GACTVASRLSALGF
Trigger: AAAGCCAAGAGCGGAGAGCCTCGAGGCGACCGTGCACGCCCCTCAGTTGACCATGGCCTTGCCAGGCTGGTGACAGTGTATTGTGAGCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp TTCGTGCTGCTGCTGGTGCACTGTGCCAATTCCTACCGCAGGTGCTaGCAAAGGGGGTCGGCTTACAAGACGGAGCCTGCAAGCCAGTTG +
Preference number: 5 (lower is better)
Translates to: FVLLLVHCANSYRRC*QRGSAYKTEPASQL
Trigger: CAACTGGCTTGCAGGCTCCGTCTTGTAAGCCGACCCCCTTTGCCAGCACCTGCGGTAGGAATTGGCACAGTGCACCAGCAGCAGCACGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp AACGCAGACTTCCACGCTAAGCTAGGGGGAGGGGAGGGAATGGAGGAGCGCACTCCCACGGCCAACATCTaGGCCGCTCAGACGAACATT +
Preference number: 5 (lower is better)
Translates to: NADFHAKLGGGEGMEERTPTANI*AAQTNI
Trigger: AATGTTCGTCTGAGCGGCCAAGATGTTGGCCGTGGG...AGTGCGCTCCTCCATTCCCTCCCCTCCCCCTAGCTTAGCGTGGAAGTCTGCGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 90 bp ATGAGTGCTCAGGCCCAGCTCCATCATAGCCATGTGGAAGGAGGATaGCGAGGCCACTCTGCAGGAGCCACTTGGCCTCTCCTCCTGAGA +
Preference number: 5 (lower is better)
Translates to: MSAQAQLHHSHVEGG*RGHSAGATWPLLLR
Trigger: TCTCAGGAGGAGAGGCCAAGTGGCTCCTGCAGAGTGGCCTCGTCATCCTCCTTCCACATGGCTATGATGGAGCTGGGCCTGAGCACTCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp AGGAGGGCTTGTCCAGGGAAGAGAGGGTTGATCTGGGCAGCTTTGTaGCCATGCTCACAATACACTGTCACCAGCCTGGCAAGGCCATGG +
Preference number: 5 (lower is better)
Translates to: RRACPGKRGLIWAAL*PCSQYTVTSLARPW
Trigger: CCATGGCCTTGCCAGGCTGGTGACAGTGTATTGTGAGCATGGCCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTGGACAAGCCCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 90 bp CGCCAAACTGAGCTTCCCAGAGGGGCAGCAACGTGGGGCTTTCGATaGTCATCCCATATTCAAATCCCAGGACAGCCTCTTCTGACAGGG +
Preference number: 5 (lower is better)
Translates to: RQTELPRGAATWGFR*SSHIQIPGQPLLTG
Trigger: CCCTGTCAGAAGAGGCTGTCCTGGGATTTGAATATGGGATGAGCATCGAAAGCCCCACGTTGCTGCCCCTCTGGGAAGCTCAGTTTGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp GGCACAGTATCCAGGAGGGCTTGTCCAGGGAAGAGAGGGTTGATCTaGGCAGCTTTGTGGCCATGCTCACAATACACTGTCACCAGCCTG +
Preference number: 5 (lower is better)
Translates to: GTVSRRACPGKRGLI*AALWPCSQYTVTSL
Trigger: CAGGCTGGTGACAGTGTATTGTGAGCATGGCCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTGGACAAGCCCTCCTGGATACTGTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp TATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCGCGAGGCTCTCCGCTCTaGGCTTTCCTAGGCCGGTAT +
Preference number: 5 (lower is better)
Translates to: YTVIVRPAWTTGDCMGTARGSPL*AFLGRY
Trigger: ATACCGGCCTAGGAAAGCCAAGAGCGGAGAGCCTCG...CGCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp AACGCAGACTTCCACGCTAAGCTAGGGGGAGGGGAGGGAATGGAGGAGCGCACTTTGATCTGGGCAGCTTaGTGGCCATGCTCACAATAC +
Preference number: 5 (lower is better)
Translates to: NADFHAKLGGGEGMEERTLIWAA*WPCSQY
Trigger: GTATTGTGAGCATGGCCACAAAGCTGCCCAGATCAA...AGTGCGCTCCTCCATTCCCTCCCCTCCCCCTAGCTTAGCGTGGAAGTCTGCGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 90 bp GCTTGTCCAGGGAAGAGAGGGTTGATCTGGGCAGCTTTGTGGCCATaGTCACAATACACTGTCACCAGCCTGGCAAGGCCATGGTCAACT +
Preference number: 5 (lower is better)
Translates to: ACPGKRGLIWAALWP*SQYTVTSLARPWST
Trigger: AGTTGACCATGGCCTTGCCAGGCTGGTGACAGTGTATTGTGAGCATGGCCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTGGACAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp GCGCTGATATTCAAAAGCCAGGCGTGTCGCTCGGACCACTTCCTCTaGGCTGTCTCCATTGACATGGATGATGGCACAGCCTACGAGCTT +
Preference number: 5 (lower is better)
Translates to: ALIFKSQACRSDHFL*AVSIDMDDGTAYEL
Trigger: AAGCTCGTAGGCTGTGCCATCATCCATGTCAATGGAGACAGCCCAGAGGAAGTGGTCCGAGCGACACGCCTGGCTTTTGAATATCAGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp AGGCGTGTCGCTCGGACCACTTCCTCTGGGCTGTCTCCATTGACATaGATGATGGCACAGCCTACGAGCTTTCCGATATCAGAGCTGTAT +
Preference number: 5 (lower is better)
Translates to: RRVARTTSSGLSPLT*MMAQPTSFPISELY
Trigger: ATACAGCTCTGATATCGGAAAGCTCGTAGGCTGTGCCATCATCCATGTCAATGGAGACAGCCCAGAGGAAGTGGTCCGAGCGACACGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp GACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCCCAGGGAAGAGAGGGTaGATCTGGGCAGCTTTGTGG +
Preference number: 5 (lower is better)
Translates to: DRSLLIYRQLQWNLNPTAPGKRG*IWAALW
Trigger: CCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTGG...GGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 90 bp TTTCAGGCACAGTATCCAGGAGGGCTTGTCCAGGGAAGAGAGGGTTaGTCTGGGCAGCTTTGTGGCCATGCTCACAATACACTGTCACCA +
Preference number: 5 (lower is better)
Translates to: FQAQYPGGLVQGREG*SGQLCGHAHNTLSP
Trigger: TGGTGACAGTGTATTGTGAGCATGGCCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTGGACAAGCCCTCCTGGATACTGTGCCTGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 90 bp TTCACAGTGTCGCTGTCCACACCTTCTTCTGCACTATCGCACATCTaGAAGAAGCGCTCTATCCGACAAGATGAGTGCTCAGGCCCAGCT +
Preference number: 5 (lower is better)
Translates to: FTVSLSTPSSALSHI*KKRSIRQDECSGPA
Trigger: AGCTGGGCCTGAGCACTCATCTTGTCGGATAGAGCGCTTCTTGCAGATGTGCGATAGTGCAGAAGAAGGTGTGGACAGCGACACTGTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp AGCCCATCATGCTCTCTGCCCCTTCACCGCCGTATCTCTTCACCGTaGCAAACTTGGTGGCCAAAAAGTGGTCAAACTCCTGAGACTCTA +
Preference number: 5 (lower is better)
Translates to: SPSCSLPLHRRISSP*QTWWPKSGQTPETL
Trigger: TAGAGTCTCAGGAGTTTGACCACTTTTTGGCCACCAAGTTTGCCACGGTGAAGAGATACGGCGGTGAAGGGGCAGAGAGCATGATGGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp TTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCAGTATCCAGGAGGGCTaGTCCAGGGAAGAGAGGGTT +
Preference number: 5 (lower is better)
Translates to: LYSDCEASLDYRRLHGYSSIQEG*SREERV
Trigger: AACCCTCTCTTCCCTGGACAAGCCCTCCTGGATACT...GCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp GACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCAGGGGTTGGGCAGCATaGTCACATGGAGGGGTTGAT +
Preference number: 5 (lower is better)
Translates to: DRSLLIYRQLQWNLNPTARGWAA*SHGGVD
Trigger: ATCAACCCCTCCATGTGACAATGCTGCCCAACCCCT...GGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp CAGATTCAGTTGTTCAAATCAGTCCAGAACTTCAGGGGAACGCAGACTTCCACGCTCTGCAGGAGCCACTaGGCCTCTCCTCCTGAGATG +
Preference number: 5 (lower is better)
Translates to: QIQLFKSVQNFRGTQTSTLCRSH*ASPPEM
Trigger: CATCTCAGGAGGAGAGGCCAAGTGGCTCCTGCAGAG...CGTGGAAGTCTGCGTTCCCCTGAAGTTCTGGACTGATTTGAACAACTGAATCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 90 bp TTCTGCACTATCGCACATCTGCAAGAAGCGCTCTATCCGACAAGATaGGTGCTCAGGCCCAGCTCCATCATAGCCATGTGGAAGGAGGAT +
Preference number: 5 (lower is better)
Translates to: FCTIAHLQEALYPTR*VLRPSSIIAMWKED
Trigger: ATCCTCCTTCCACATGGCTATGATGGAGCTGGGCCTGAGCACTCATCTTGTCGGATAGAGCGCTTCTTGCAGATGTGCGATAGTGCAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 90 bp GGAAACCTCCTCCTGGGTCATGAGTCCACTGGCAATGAGGTGCTCTaGGTAGGTATCAGGAATGCTCTTGCGGGCTCTGATGATTTTGTA +
Preference number: 5 (lower is better)
Translates to: GNLLLGHESTGNEVL*VGIRNALAGSDDFV
Trigger: TACAAAATCATCAGAGCCCGCAAGAGCATTCCTGATACCTACGCAGAGCACCTCATTGCCAGTGGACTCATGACCCAGGAGGAGGTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp CTAGGTCCACTGAGGAGGTCAGGTGGGACAGGACATCACCAATGGTaGCAACATTCTCTGGAAACTCGCTTAAGCCTCGCATTTTACGGA +
Preference number: 5 (lower is better)
Translates to: LGPLRRSGGTGHHQW*QHSLETRLSLAFYG
Trigger: TCCGTAAAATGCGAGGCTTAAGCGAGTTTCCAGAGAATGTTGCCACCATTGGTGATGTCCTGTCCCACCTGACCTCCTCAGTGGACCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp AGTTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAAGTATCCAGGAGGGCTaGTCCAGGGAAGAGAGGGTT +
Preference number: 5 (lower is better)
Translates to: SYTVIVRPAWTTGDCMGTSIQEG*SREERV
Trigger: AACCCTCTCTTCCCTGGACAAGCCCTCCTGGATACT...TGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp TTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCTCTGGGCTGTCTCCATaGACATGGATGATGGCACAG +
Preference number: 5 (lower is better)
Translates to: LYSDCEASLDYRRLHGYSSGLSP*TWMMAQ
Trigger: CTGTGCCATCATCCATGTCAATGGAGACAGCCCAGA...GCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp CTGGTCAAAGACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCTCTGCAGGAGCCACTaGGCCTCTCCTCCTGAGATG +
Preference number: 5 (lower is better)
Translates to: LVKDRSLLIYRQLQWNLNLCRSH*ASPPEM
Trigger: CATCTCAGGAGGAGAGGCCAAGTGGCTCCTGCAGAG...GTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTCTTTGACCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp TTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCCCATTTCCTCAAGAGTaGACACAGCTGCAGGGTACC +
Preference number: 5 (lower is better)
Translates to: LYSDCEASLDYRRLHGYSPFPQE*TQLQGT
Trigger: GGTACCCTGCAGCTGTGTCAACTCTTGAGGAAATGG...GCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp TCTCTGCCCCTTCACCGCCGTATCTCTTCACCGTGGCAAACTTGGTaGCCAAAAAGTGGTCAAACTCCTGAGACTCTAGCAATAGTTTGG +
Preference number: 5 (lower is better)
Translates to: SLPLHRRISSPWQTW*PKSGQTPETLAIVW
Trigger: CCAAACTATTGCTAGAGTCTCAGGAGTTTGACCACTTTTTGGCCACCAAGTTTGCCACGGTGAAGAGATACGGCGGTGAAGGGGCAGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp TGCTCTCTGCCCCTTCACCGCCGTATCTCTTCACCGTGGCAAACTTaGTGGCCAAAAAGTGGTCAAACTCCTGAGACTCTAGCAATAGTT +
Preference number: 5 (lower is better)
Translates to: CSLPLHRRISSPWQT*WPKSGQTPETLAIV
Trigger: AACTATTGCTAGAGTCTCAGGAGTTTGACCACTTTTTGGCCACCAAGTTTGCCACGGTGAAGAGATACGGCGGTGAAGGGGCAGAGAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp AGTCTAGGTCCACTGAGGAGGTCAGGTGGGACAGGACATCACCAATaGTGGCAACATTCTCTGGAAACTCGCTTAAGCCTCGCATTTTAC +
Preference number: 5 (lower is better)
Translates to: SLGPLRRSGGTGHHQ*WQHSLETRLSLAFY
Trigger: GTAAAATGCGAGGCTTAAGCGAGTTTCCAGAGAATGTTGCCACCATTGGTGATGTCCTGTCCCACCTGACCTCCTCAGTGGACCTAGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp TCCGAATCATCTGCCTTCTTAGCAAATGGAAGTACTGAGCAGGGGTaGTCGGGTGTACCACAAACATGTTCACAGTGTCGCTGTCCACAC +
Preference number: 5 (lower is better)
Translates to: SESSAFLANGSTEQG*SGVPQTCSQCRCPH
Trigger: GTGTGGACAGCGACACTGTGAACATGTTTGTGGTACACCCGACCACCCCTGCTCAGTACTTCCATTTGCTAAGAAGGCAGATGATTCGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp AAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCAGCCCTCGAGGCTCTCCGCTCTaGGCTTTCCTAGGCCGGTAT +
Preference number: 5 (lower is better)
Translates to: KHGALLVKLERQWMYSSPRGSPL*AFLGRY
Trigger: ATACCGGCCTAGGAAAGCCAAGAGCGGAGAGCCTCG...AGGGCTGGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp TCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAATGTCCGGACAAGAGCTaGGATTTCAGGCACAGTATC +
Preference number: 5 (lower is better)
Translates to: SEPDCLMTPSSSSLTSNECPDKS*DFRHSI
Trigger: GATACTGTGCCTGAAATCCAAGCTCTTGTCCGGACA...TTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp ACAGTGGAATCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATGTCCGGACAAGAGCTaGGATTTCAGGCACAGTATC +
Preference number: 5 (lower is better)
Translates to: TVESEPDCLMTPSSSSLTCPDKS*DFRHSI
Trigger: GATACTGTGCCTGAAATCCAAGCTCTTGTCCGGACA...TGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp ACAGTGGAATCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACACCCCAGAGACTCTCTTaGCTTCAGCAGGGCATAAAA +
Preference number: 5 (lower is better)
Translates to: TVESEPDCLMTPSSSSLTPQRLS*LQQGIK
Trigger: TTTTATGCCCTGCTGAAGCAAAGAGAGTCTCTGGGG...TGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp CCTGCAAGCCAGTTGTTTTTCAAACCTTGGAGAAACAAAAGACCATaGACCCATGTTCTGCGGCTCCTCCTGACTCCAGATGACATCTCG +
Preference number: 5 (lower is better)
Translates to: PASQLFFKPWRNKRP*THVLRLLLTPDDIS
Trigger: CGAGATGTCATCTGGAGTCAGGAGGAGCCGCAGAACATGGGTCCATGGTCTTTTGTTTCTCCAAGGTTTGAAAAACAACTGGCTTGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp GACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCGACTGCCAGAGAAGCTGCTTCTTaGCCCAGGTTTAACAGTCCT +
Preference number: 5 (lower is better)
Translates to: DRSLLIYRQLQWNLNPTAREAAS*PRFNSP
Trigger: AGGACTGTTAAACCTGGGCAAAGAAGCAGCTTCTCT...GGCAGTCGGGTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp CAGATTCAGTTGTTCAAATCAGTCCAGAACTTCAGGGGAACGCAGACTTCCACGTCTGGGCTGTCTCCATaGACATGGATGATGGCACAG +
Preference number: 5 (lower is better)
Translates to: QIQLFKSVQNFRGTQTSTSGLSP*TWMMAQ
Trigger: CTGTGCCATCATCCATGTCAATGGAGACAGCCCAGA...CGTGGAAGTCTGCGTTCCCCTGAAGTTCTGGACTGATTTGAACAACTGAATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp AGTTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACACGGGCTCTGATGATTTaGTACATGACTGGGTTGGTG +
Preference number: 5 (lower is better)
Translates to: SYTVIVRPAWTTGDCMGTRALMI*YMTGLV
Trigger: CACCAACCCAGTCATGTACAAAATCATCAGAGCCCG...TGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp TTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACAGCGTATCAGGAATGCTCTaGCGGGCTCTGATGATTTTG +
Preference number: 5 (lower is better)
Translates to: LYSDCEASLDYRRLHGYSVSGML*RALMIL
Trigger: CAAAATCATCAGAGCCCGCAAGAGCATTCCTGATAC...GCTGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp ACAGTGGAATCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACAGTATCAGGAATGCTCTaGCGGGCTCTGATGATTTTG +
Preference number: 5 (lower is better)
Translates to: TVESEPDCLMTPSSSSLTVSGML*RALMIL
Trigger: CAAAATCATCAGAGCCCGCAAGAGCATTCCTGATAC...TGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGATTCCACTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp CCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAAGCATAACAAACACCACCATGGCATGCCTTaGACTAAAAGTCCCACGGCC +
Preference number: 5 (lower is better)
Translates to: PNDPLFQFTHIERKHNKHHHGMP*TKSPTA
Trigger: GGCCGTGGGACTTTTAGTCAAAGGCATGCCATGGTG...GTGTTTGTTATGCTTTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 90 bp GCCCAGTCTAGACCGCTTCCATTCTTCACCTTCTCCATTCTTGACTaGACATACATCTTTAGAAGGTGGCTGTGCACCTGCAGTTCCTCT +
Preference number: 5 (lower is better)
Translates to: AQSRPLPFFTFSILD*TYIFRRWLCTCSSS
Trigger: AGAGGAACTGCAGGTGCACAGCCACCTTCTAAAGATGTATGTTCAGTCAAGAATGGAGAAGGTGAAGAATGGAAGCGGTCTAGACTGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 90 bp TATGACCCCACTGCCTATAGCATAACAAATCAACAATCACATCCTTaGGGAACTGGCGCTGATATTCAAAAGCCAGGCGTGTCGCTCGGA +
Preference number: 5 (lower is better)
Translates to: YDPTAYSITNQQSHP*GTGADIQKPGVSLG
Trigger: TCCGAGCGACACGCCTGGCTTTTGAATATCAGCGCCAGTTCCGCAAGGATGTGATTGTTGATTTGTTATGCTATAGGCAGTGGGGTCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 90 bp GTCTCTCTCTTCCTGGCTCTGAAGCTGGGCGGTTTCGATAGAAATTaGGCCACAGTAGATATGGTTCAGATAGGCCAATACTTCCTCAAG +
Preference number: 5 (lower is better)
Translates to: VSLFLALKLGGFDRN*ATVDMVQIGQYFLK
Trigger: CTTGAGGAAGTATTGGCCTATCTGAACCATATCTACTGTGGCCCAATTTCTATCGAAACCGCCCAGCTTCAGAGCCAGGAAGAGAGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp AGTTATACAGTGATTGTGAGGCCAGCCTGGACTACAGGAGACTGCATGGGTACATTGTACATGACTGGGTaGGTGAAGAAAGGCTCGTCT +
Preference number: 5 (lower is better)
Translates to: SYTVIVRPAWTTGDCMGTLYMTG*VKKGSS
Trigger: AGACGAGCCTTTCTTCACCAACCCAGTCATGTACAA...TGTACCCATGCAGTCTCCTGTAGTCCAGGCTGGCCTCACAATCACTGTATAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp CTGGTCAAAGACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCCATTTCCTCAAGAGTaGACACAGCTGCAGGGTACC +
Preference number: 5 (lower is better)
Translates to: LVKDRSLLIYRQLQWNLNPFPQE*TQLQGT
Trigger: GGTACCCTGCAGCTGTGTCAACTCTTGAGGAAATGG...GTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTCTTTGACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp ATCAGAAAATATCATAGCAGCTGGGCAGTGGTAGCGCACGTCTTTAATCCCAGCTCACCAATGACAGGTTaGAATGCTGTTCCTGGTGCC +
Preference number: 5 (lower is better)
Translates to: IRKYHSSWAVVAHVFNPSSPMTG*NAVPGA
Trigger: GGCACCAGGAACAGCATTCAAACCTGTCATTGGTGA...GCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGATATTTTCTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 90 bp TTTCTGAAGTTCCGAATCATCTGCCTTCTTAGCAAATGGAAGTACTaGGCAGGGGTGGTCGGGTGTACCACAAACATGTTCACAGTGTCG +
Preference number: 5 (lower is better)
Translates to: FLKFRIICLLSKWKY*AGVVGCTTNMFTVS
Trigger: CGACACTGTGAACATGTTTGTGGTACACCCGACCACCCCTGCTCAGTACTTCCATTTGCTAAGAAGGCAGATGATTCGGAACTTCAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp CAGATTCAGTTGTTCAAATCAGTCCAGAACTTCAGGGGAACGCAGACTTCCACGAGAGAAGCTGCTTCTTaGCCCAGGTTTAACAGTCCT +
Preference number: 5 (lower is better)
Translates to: QIQLFKSVQNFRGTQTSTREAAS*PRFNSP
Trigger: AGGACTGTTAAACCTGGGCAAAGAAGCAGCTTCTCT...CGTGGAAGTCTGCGTTCCCCTGAAGTTCTGGACTGATTTGAACAACTGAATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp CTGGTCAAAGACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACCGGGCTCTGATGATTTaGTACATGACTGGGTTGGTG +
Preference number: 5 (lower is better)
Translates to: LVKDRSLLIYRQLQWNLNRALMI*YMTGLV
Trigger: CACCAACCCAGTCATGTACAAAATCATCAGAGCCCG...GTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTCTTTGACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp GATGTAAAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCCCCACGGCCAACATCTaGGCCGCTCAGACGAACATT +
Preference number: 5 (lower is better)
Translates to: DVKHGALLVKLERQWMYSPTANI*AAQTNI
Trigger: AATGTTCGTCTGAGCGGCCAAGATGTTGGCCGTGGG...GGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTTTACATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp CTGGTCAAAGACCGTTCTCTGCTCATTTACAGGCAGTTACAGTGGAATCTGAACTCACCAATGACAGGTTaGAATGCTGTTCCTGGTGCC +
Preference number: 5 (lower is better)
Translates to: LVKDRSLLIYRQLQWNLNSPMTG*NAVPGA
Trigger: GGCACCAGGAACAGCATTCAAACCTGTCATTGGTGA...GTTCAGATTCCACTGTAACTGCCTGTAAATGAGCAGAGAACGGTCTTTGACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp TCTGAACCCGACTGCCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAGACTCTAGCAATAGTTaGGACAGGTATTTTCGTTCT +
Preference number: 5 (lower is better)
Translates to: SEPDCLMTPSSSSLTSNEDSSNS*DRYFRS
Trigger: AGAACGAAAATACCTGTCCAAACTATTGCTAGAGTC...TTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGGCAGTCGGGTTCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp GATGTAAAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCAGGGGTTGGGCAGCATaGTCACATGGAGGGGTTGAT +
Preference number: 5 (lower is better)
Translates to: DVKHGALLVKLERQWMYSRGWAA*SHGGVD
Trigger: ATCAACCCCTCCATGTGACAATGCTGCCCAACCCCT...GGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTTTACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp GAAAGGCAATGGATGTATTCCAGCCCTTCCTATGTCCCCATAACCTTTTTAAAACACCATGGCATGCCTTaGACTAAAAGTCCCACGGCC +
Preference number: 5 (lower is better)
Translates to: ERQWMYSSPSYVPITFLKHHGMP*TKSPTA
Trigger: GGCCGTGGGACTTTTAGTCAAAGGCATGCCATGGTG...TTTTAAAAAGGTTATGGGGACATAGGAAGGGCTGGAATACATCCATTGCCTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS TCA 90 bp CTCTTCACCGTGGCAAACTTGGTGGCCAAAAAGTGGTCAAACTCCTaGGACTCTAGCAATAGTTTGGACAGGTATTTTCGTTCTTCTGTG +
Preference number: 5 (lower is better)
Translates to: LFTVANLVAKKWSNS*DSSNSLDRYFRSSV
Trigger: CACAGAAGAACGAAAATACCTGTCCAAACTATTGCTAGAGTCTCAGGAGTTTGACCACTTTTTGGCCACCAAGTTTGCCACGGTGAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 90 bp CTTGGAGAAACAAAAGACCATGGACCCATGTTCTGCGGCTCCTCCTaGCTCCAGATGACATCTCGAACATGTTTATATTTGCTCATCTCT +
Preference number: 5 (lower is better)
Translates to: LGETKDHGPMFCGSS*LQMTSRTCLYLLIS
Trigger: AGAGATGAGCAAATATAAACATGTTCGAGATGTCATCTGGAGTCAGGAGGAGCCGCAGAACATGGGTCCATGGTCTTTTGTTTCTCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp CACCTTAAATCCCAGCACTCAGAAGGCAGAGACAGAGAGACCTCTGAGTTCAAGGACTCTAGCAATAGTTaGGACAGGTATTTTCGTTCT +
Preference number: 5 (lower is better)
Translates to: HLKSQHSEGRDRETSEFKDSSNS*DRYFRS
Trigger: AGAACGAAAATACCTGTCCAAACTATTGCTAGAGTC...CTTGAACTCAGAGGTCTCTCTGTCTCTGCCTTCTGAGTGCTGGGATTTAAGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp GATGTAAAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCCCCCAGAGACTCTCTTaGCTTCAGCAGGGCATAAAA +
Preference number: 5 (lower is better)
Translates to: DVKHGALLVKLERQWMYSPQRLS*LQQGIK
Trigger: TTTTATGCCCTGCTGAAGCAAAGAGAGTCTCTGGGG...GGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTTTACATC
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS TCA 90 bp GAGACTCTAGCAATAGTTTGGACAGGTATTTTCGTTCTTCTGTGGTaGACGTCTCCTTTTTCAGTTCCTCAAACCTTCTGGCAAACCAGT +
Preference number: 5 (lower is better)
Translates to: ETLAIVWTGIFVLLW*TSPFSVPQTFWQTS
Trigger: ACTGGTTTGCCAGAAGGTTTGAGGAACTGAAAAAGGAGACGTTCACCACAGAAGAACGAAAATACCTGTCCAAACTATTGCTAGAGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp GATGTAAAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCTTGTACATGACTGGGTaGGTGAAGAAAGGCTCGTCT +
Preference number: 5 (lower is better)
Translates to: DVKHGALLVKLERQWMYSLYMTG*VKKGSS
Trigger: AGACGAGCCTTTCTTCACCAACCCAGTCATGTACAA...GGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTTTACATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp GAGGAAAGATATGGAAAGTTATGTGTATTGAACCAATTAAGAGGTAGTGTTGGGTTGATCTGGGCAGCTTaGTGGCCATGCTCACAATAC +
Preference number: 5 (lower is better)
Translates to: EERYGKLCVLNQLRGSVGLIWAA*WPCSQY
Trigger: GTATTGTGAGCATGGCCACAAAGCTGCCCAGATCAA...CCCAACACTACCTCTTAATTGGTTCAATACACATAACTTTCCATATCTTTCCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp CCTAATGACCCCCTCTTCCAGTTCACTCACATCGAACGAAAGCATAACAAACACTCACCTTCTCCATTCTaGACTGAACATACATCTTTA +
Preference number: 5 (lower is better)
Translates to: PNDPLFQFTHIERKHNKHSPSPF*TEHTSL
Trigger: TAAAGATGTATGTTCAGTCAAGAATGGAGAAGGTGA...GTGTTTGTTATGCTTTCGTTCGATGTGAGTGAACTGGAAGAGGGGGTCATTAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS-3UTR CAA 90 bp AAACATGGCGCATTGCTGGTAAAATTGGAAAGGCAATGGATGTATTCCAGCCCTTCACCTTCTCCATTCTaGACTGAACATACATCTTTA +
Preference number: 5 (lower is better)
Translates to: KHGALLVKLERQWMYSSPSPSPF*TEHTSL
Trigger: TAAAGATGTATGTTCAGTCAAGAATGGAGAAGGTGA...AGGGCTGGAATACATCCATTGCCTTTCCAATTTTACCAGCAATGCGCCATGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095147.9
CDS GCA 72 bp ACCCCTGTGTCCCAGGTGGTGACACATGCTTCTGGCTaGACCAGGCCCTGCCAGCGGGCCTGCAGGTTAGTG +
Preference number: 6 (lower is better)
Translates to: TPVSQVVTHASG*TRPCQRACRLV
Trigger: CACTAACCTGCAGGCCCGCTGGCAGGGCCTGGTGCAGCCAGAAGCATGTGTCACCACCTGGGACACAGGGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 72 bp ATACACTGTCACCAGCCTGGCAAGGCCATGGTCAACTaGGGGGCGTGCACGGTCGCCTCGAGGCTCTCCGCT +
Preference number: 6 (lower is better)
Translates to: IHCHQPGKAMVN*GACTVASRLSA
Trigger: AGCGGAGAGCCTCGAGGCGACCGTGCACGCCCCTCAGTTGACCATGGCCTTGCCAGGCTGGTGACAGTGTAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 72 bp CTGCTGCTGGTGCACTGTGCCAATTCCTACCGCAGGTaGTGGCAAAGGGGGTCGGCTTACAAGACGGAGCCT +
Preference number: 6 (lower is better)
Translates to: LLLVHCANSYRR*WQRGSAYKTEP
Trigger: AGGCTCCGTCTTGTAAGCCGACCCCCTTTGCCAGCACCTGCGGTAGGAATTGGCACAGTGCACCAGCAGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp CTGCTGGTGCACTGTGCCAATTCCTACCGCAGGTGCTaGCAAAGGGGGTCGGCTTACAAGACGGAGCCTGCA +
Preference number: 6 (lower is better)
Translates to: LLVHCANSYRRC*QRGSAYKTEPA
Trigger: TGCAGGCTCCGTCTTGTAAGCCGACCCCCTTTGCCAGCACCTGCGGTAGGAATTGGCACAGTGCACCAGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 72 bp CGCAGAAGGAAGCGTCACCGTGGACCTGCAGGCATATaGCTTTGTCCCCAGGCTGAGCAGAACCATTCGGGG +
Preference number: 6 (lower is better)
Translates to: RRRKRHRGPAGI*LCPQAEQNHSG
Trigger: CCCCGAATGGTTCTGCTCAGCCTGGGGACAAAGTCATATGCCTGCAGGTCCACGGTGACGCTTCCTTCTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CAA 90 bp TCCAGGAGGGCTTGTCCAGGGAAGAGAGGGTTGATCTGGGCAGCTTaGTGGCCATGCTCACAATACACTGTCACCAGCCTGGCAAGGCCA +
Preference number: 6 (lower is better)
Translates to: SRRACPGKRGLIWAA*WPCSQYTVTSLARP
Trigger: TGGCCTTGCCAGGCTGGTGACAGTGTATTGTGAGCATGGCCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTGGACAAGCCCTCCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 72 bp TGTGAGGGGTTGGGCAGCATTGTCACATGGAGGGGTTaGTGGGCACCGAAGTCTAGGTCCACTGAGGAGGTC +
Preference number: 6 (lower is better)
Translates to: CEGLGSIVTWRG*WAPKSRSTEEV
Trigger: GACCTCCTCAGTGGACCTAGACTTCGGTGCCCATCAACCCCTCCATGTGACAATGCTGCCCAACCCCTCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 72 bp TGGAGAGAATGTCTTCGTGCTGCTGCTGGTGCACTGTaGCAATTCCTACCGCAGGTGCTGGCAAAGGGGGTC +
Preference number: 6 (lower is better)
Translates to: WRECLRAAAGAL*QFLPQVLAKGV
Trigger: GACCCCCTTTGCCAGCACCTGCGGTAGGAATTGGCACAGTGCACCAGCAGCAGCACGAAGACATTCTCTCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp CTTTGTGGCCATGCTCACAATACACTGTCACCAGCCTaGCAAGGCCATGGTCAACTGAGGGGCGTGCACGGT +
Preference number: 6 (lower is better)
Translates to: LCGHAHNTLSPA*QGHGQLRGVHG
Trigger: ACCGTGCACGCCCCTCAGTTGACCATGGCCTTGCCAGGCTGGTGACAGTGTATTGTGAGCATGGCCACAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CAA 72 bp CGTGTCGCTCGGACCACTTCCTCTGGGCTGTCTCCATaGACATGGATGATGGCACAGCCTACGAGCTTTCCG +
Preference number: 6 (lower is better)
Translates to: RVARTTSSGLSP*TWMMAQPTSFP
Trigger: CGGAAAGCTCGTAGGCTGTGCCATCATCCATGTCAATGGAGACAGCCCAGAGGAAGTGGTCCGAGCGACACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CAA 90 bp CAGTCCTGTGGTAGTGAAGGGTCCCTGGAGTGTCCGGACAAGAGCTaGGATTTCAGGCACAGTATCCAGGAGGGCTTGTCCAGGGAAGAG +
Preference number: 6 (lower is better)
Translates to: QSCGSEGSLECPDKS*DFRHSIQEGLSREE
Trigger: CTCTTCCCTGGACAAGCCCTCCTGGATACTGTGCCTGAAATCCAAGCTCTTGTCCGGACACTCCAGGGACCCTTCACTACCACAGGACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 72 bp GGGAAGAGAGGGTTGATCTGGGCAGCTTTGTGGCCATaGTCACAATACACTGTCACCAGCCTGGCAAGGCCA +
Preference number: 6 (lower is better)
Translates to: GKRGLIWAALWP*SQYTVTSLARP
Trigger: TGGCCTTGCCAGGCTGGTGACAGTGTATTGTGAGCATGGCCACAAAGCTGCCCAGATCAACCCTCTCTTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp TTCAAAAGCCAGGCGTGTCGCTCGGACCACTTCCTCTaGGCTGTCTCCATTGACATGGATGATGGCACAGCC +
Preference number: 6 (lower is better)
Translates to: FKSQACRSDHFL*AVSIDMDDGTA
Trigger: GGCTGTGCCATCATCCATGTCAATGGAGACAGCCCAGAGGAAGTGGTCCGAGCGACACGCCTGGCTTTTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp GAGCGAGTAAGGAGCCCAAGGCAAGTGTCTCTGCGGTaGCCCAGTCTAGACCGCTTCCATTCTTCACCTTCT +
Preference number: 6 (lower is better)
Translates to: ERVRSPRQVSLR*PSLDRFHSSPS
Trigger: AGAAGGTGAAGAATGGAAGCGGTCTAGACTGGGCCACCGCAGAGACACTTGCCTTGGGCTCCTTACTCGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CAA 72 bp GGTAGTGAAGGGTCCCTGGAGTGTCCGGACAAGAGCTaGGATTTCAGGCACAGTATCCAGGAGGGCTTGTCC +
Preference number: 6 (lower is better)
Translates to: GSEGSLECPDKS*DFRHSIQEGLS
Trigger: GGACAAGCCCTCCTGGATACTGTGCCTGAAATCCAAGCTCTTGTCCGGACACTCCAGGGACCCTTCACTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CAA 90 bp TGTCCGGACAAGAGCTTGGATTTCAGGCACAGTATCCAGGAGGGCTaGTCCAGGGAAGAGAGGGTTGATCTGGGCAGCTTTGTGGCCATG +
Preference number: 6 (lower is better)
Translates to: CPDKSLDFRHSIQEG*SREERVDLGSFVAM
Trigger: CATGGCCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTGGACAAGCCCTCCTGGATACTGTGCCTGAAATCCAAGCTCTTGTCCGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CAA 90 bp AAAGCCAGGCGTGTCGCTCGGACCACTTCCTCTGGGCTGTCTCCATaGACATGGATGATGGCACAGCCTACGAGCTTTCCGATATCAGAG +
Preference number: 6 (lower is better)
Translates to: KARRVARTTSSGLSP*TWMMAQPTSFPISE
Trigger: CTCTGATATCGGAAAGCTCGTAGGCTGTGCCATCATCCATGTCAATGGAGACAGCCCAGAGGAAGTGGTCCGAGCGACACGCCTGGCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 72 bp CTCCTGGGTCATGAGTCCACTGGCAATGAGGTGCTCTaGGTAGGTATCAGGAATGCTCTTGCGGGCTCTGAT +
Preference number: 6 (lower is better)
Translates to: LLGHESTGNEVL*VGIRNALAGSD
Trigger: ATCAGAGCCCGCAAGAGCATTCCTGATACCTACGCAGAGCACCTCATTGCCAGTGGACTCATGACCCAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp TCCAGGAGGGCTTGTCCAGGGAAGAGAGGGTTGATCTaGGCAGCTTTGTGGCCATGCTCACAATACACTGTC +
Preference number: 6 (lower is better)
Translates to: SRRACPGKRGLI*AALWPCSQYTV
Trigger: GACAGTGTATTGTGAGCATGGCCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTGGACAAGCCCTCCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp TGGGCACCGAAGTCTAGGTCCACTGAGGAGGTCAGGTaGGACAGGACATCACCAATGGTGGCAACATTCTCT +
Preference number: 6 (lower is better)
Translates to: WAPKSRSTEEVR*DRTSPMVATFS
Trigger: AGAGAATGTTGCCACCATTGGTGATGTCCTGTCCCACCTGACCTCCTCAGTGGACCTAGACTTCGGTGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 72 bp CAGTATCCAGGAGGGCTTGTCCAGGGAAGAGAGGGTTaGTCTGGGCAGCTTTGTGGCCATGCTCACAATACA +
Preference number: 6 (lower is better)
Translates to: QYPGGLVQGREG*SGQLCGHAHNT
Trigger: TGTATTGTGAGCATGGCCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTGGACAAGCCCTCCTGGATACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 72 bp CCAACATCTTGGCCGCTCAGACGAACATTGAAACCTTaGGCGAGTAAGGAGCCCAAGGCAAGTGTCTCTGCG +
Preference number: 6 (lower is better)
Translates to: PTSWPLRRTLKP*ASKEPKASVSA
Trigger: CGCAGAGACACTTGCCTTGGGCTCCTTACTCGCTCAAGGTTTCAATGTTCGTCTGAGCGGCCAAGATGTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 72 bp TCATCAGTGTCCTGGCAAACCACCATGGCATGCCTTTaGCTAAAAGTCCCACGGCCAACATCTTGGCCGCTC +
Preference number: 6 (lower is better)
Translates to: SSVSWQTTMACL*LKVPRPTSWPL
Trigger: GAGCGGCCAAGATGTTGGCCGTGGGACTTTTAGTCAAAGGCATGCCATGGTGGTTTGCCAGGACACTGATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 72 bp ATCGCACATCTGCAAGAAGCGCTCTATCCGACAAGATaGGTGCTCAGGCCCAGCTCCATCATAGCCATGTGG +
Preference number: 6 (lower is better)
Translates to: IAHLQEALYPTR*VLRPSSIIAMW
Trigger: CCACATGGCTATGATGGAGCTGGGCCTGAGCACTCATCTTGTCGGATAGAGCGCTTCTTGCAGATGTGCGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 72 bp AAGGTCTTGGAGAGAATGTCTTCGTGCTGCTGCTGGTaGACTGTGCCAATTCCTACCGCAGGTGCTGGCAAA +
Preference number: 6 (lower is better)
Translates to: KVLERMSSCCCW*TVPIPTAGAGK
Trigger: TTTGCCAGCACCTGCGGTAGGAATTGGCACAGTGCACCAGCAGCAGCACGAAGACATTCTCTCCAAGACCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp CCCAGGTTTAACAGTCCTGTGGTAGTGAAGGGTCCCTaGAGTGTCCGGACAAGAGCTTGGATTTCAGGCACA +
Preference number: 6 (lower is better)
Translates to: PRFNSPVVVKGP*SVRTRAWISGT
Trigger: TGTGCCTGAAATCCAAGCTCTTGTCCGGACACTCCAGGGACCCTTCACTACCACAGGACTGTTAAACCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp TGCTCTCTGCCCCTTCACCGCCGTATCTCTTCACCGTaGCAAACTTGGTGGCCAAAAAGTGGTCAAACTCCT +
Preference number: 6 (lower is better)
Translates to: CSLPLHRRISSP*QTWWPKSGQTP
Trigger: AGGAGTTTGACCACTTTTTGGCCACCAAGTTTGCCACGGTGAAGAGATACGGCGGTGAAGGGGCAGAGAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp CCACTGAGGAGGTCAGGTGGGACAGGACATCACCAATaGTGGCAACATTCTCTGGAAACTCGCTTAAGCCTC +
Preference number: 6 (lower is better)
Translates to: PLRRSGGTGHHQ*WQHSLETRLSL
Trigger: GAGGCTTAAGCGAGTTTCCAGAGAATGTTGCCACCATTGGTGATGTCCTGTCCCACCTGACCTCCTCAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp GCTCGGACCACTTCCTCTGGGCTGTCTCCATTGACATaGATGATGGCACAGCCTACGAGCTTTCCGATATCA +
Preference number: 6 (lower is better)
Translates to: ARTTSSGLSPLT*MMAQPTSFPIS
Trigger: TGATATCGGAAAGCTCGTAGGCTGTGCCATCATCCATGTCAATGGAGACAGCCCAGAGGAAGTGGTCCGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CAA 90 bp ATTTCAGGCACAGTATCCAGGAGGGCTTGTCCAGGGAAGAGAGGGTaGATCTGGGCAGCTTTGTGGCCATGCTCACAATACACTGTCACC +
Preference number: 6 (lower is better)
Translates to: ISGTVSRRACPGKRG*IWAALWPCSQYTVT
Trigger: GGTGACAGTGTATTGTGAGCATGGCCACAAAGCTGCCCAGATCAACCCTCTCTTCCCTGGACAAGCCCTCCTGGATACTGTGCCTGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CAA 90 bp GATGTAGGCATCATCAGTGTCCTGGCAAACCACCATGGCATGCCTTaGACTAAAAGTCCCACGGCCAACATCTTGGCCGCTCAGACGAAC +
Preference number: 6 (lower is better)
Translates to: DVGIISVLANHHGMP*TKSPTANILAAQTN
Trigger: GTTCGTCTGAGCGGCCAAGATGTTGGCCGTGGGACTTTTAGTCAAAGGCATGCCATGGTGGTTTGCCAGGACACTGATGATGCCTACATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 72 bp AACCTTCTGGCAAACCAGTCTCTCTCTTCCTGGCTCTaGAGCTGGGCGGTTTCGATAGAAATTGGGCCACAG +
Preference number: 6 (lower is better)
Translates to: NLLANQSLSSWL*SWAVSIEIGPQ
Trigger: CTGTGGCCCAATTTCTATCGAAACCGCCCAGCTTCAGAGCCAGGAAGAGAGAGACTGGTTTGCCAGAAGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp CCCCTTCACCGCCGTATCTCTTCACCGTGGCAAACTTaGTGGCCAAAAAGTGGTCAAACTCCTGAGACTCTA +
Preference number: 6 (lower is better)
Translates to: PLHRRISSPWQT*WPKSGQTPETL
Trigger: TAGAGTCTCAGGAGTTTGACCACTTTTTGGCCACCAAGTTTGCCACGGTGAAGAGATACGGCGGTGAAGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp AATCGCCAAACTGAGCTTCCCAGAGGGGCAGCAACGTaGGGCTTTCGATGCTCATCCCATATTCAAATCCCA +
Preference number: 6 (lower is better)
Translates to: NRQTELPRGAAT*GFRCSSHIQIP
Trigger: TGGGATTTGAATATGGGATGAGCATCGAAAGCCCCACGTTGCTGCCCCTCTGGGAAGCTCAGTTTGGCGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CAA 72 bp GGCATGCCTTTGACTAAAAGTCCCACGGCCAACATCTaGGCCGCTCAGACGAACATTGAAACCTTGAGCGAG +
Preference number: 6 (lower is better)
Translates to: GMPLTKSPTANI*AAQTNIETLSE
Trigger: CTCGCTCAAGGTTTCAATGTTCGTCTGAGCGGCCAAGATGTTGGCCGTGGGACTTTTAGTCAAAGGCATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CAA 72 bp ATCATCAGTGTCCTGGCAAACCACCATGGCATGCCTTaGACTAAAAGTCCCACGGCCAACATCTTGGCCGCT +
Preference number: 6 (lower is better)
Translates to: IISVLANHHGMP*TKSPTANILAA
Trigger: AGCGGCCAAGATGTTGGCCGTGGGACTTTTAGTCAAAGGCATGCCATGGTGGTTTGCCAGGACACTGATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp CTTCACCGCCGTATCTCTTCACCGTGGCAAACTTGGTaGCCAAAAAGTGGTCAAACTCCTGAGACTCTAGCA +
Preference number: 6 (lower is better)
Translates to: LHRRISSPWQTW*PKSGQTPETLA
Trigger: TGCTAGAGTCTCAGGAGTTTGACCACTTTTTGGCCACCAAGTTTGCCACGGTGAAGAGATACGGCGGTGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 72 bp AACAAATCAACAATCACATCCTTGCGGAACTGGCGCTaGTATTCAAAAGCCAGGCGTGTCGCTCGGACCACT +
Preference number: 6 (lower is better)
Translates to: NKSTITSLRNWR*YSKARRVARTT
Trigger: AGTGGTCCGAGCGACACGCCTGGCTTTTGAATATCAGCGCCAGTTCCGCAAGGATGTGATTGTTGATTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 72 bp AAACATGTTCACAGTGTCGCTGTCCACACCTTCTTCTaGACTATCGCACATCTGCAAGAAGCGCTCTATCCG +
Preference number: 6 (lower is better)
Translates to: KHVHSVAVHTFF*TIAHLQEALYP
Trigger: CGGATAGAGCGCTTCTTGCAGATGTGCGATAGTGCAGAAGAAGGTGTGGACAGCGACACTGTGAACATGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp TGCAGAAGGCCTGTCAACAAATTCAACCTCCCTCTATaGGGCATCCCGATAATGATGTCGGTTATACCGCCA +
Preference number: 6 (lower is better)
Translates to: CRRPVNKFNLPL*GIPIMMSVIPP
Trigger: TGGCGGTATAACCGACATCATTATCGGGATGCCCCATAGAGGGAGGTTGAATTTGTTGACAGGCCTTCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS CCA 72 bp TTCCTGGCTCTGAAGCTGGGCGGTTTCGATAGAAATTaGGCCACAGTAGATATGGTTCAGATAGGCCAATAC +
Preference number: 6 (lower is better)
Translates to: FLALKLGGFDRN*ATVDMVQIGQY
Trigger: GTATTGGCCTATCTGAACCATATCTACTGTGGCCCAATTTCTATCGAAACCGCCCAGCTTCAGAGCCAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS GCA 72 bp ACTGCCTATAGCATAACAAATCAACAATCACATCCTTaGGGAACTGGCGCTGATATTCAAAAGCCAGGCGTG +
Preference number: 6 (lower is better)
Translates to: TAYSITNQQSHP*GTGADIQKPGV
Trigger: CACGCCTGGCTTTTGAATATCAGCGCCAGTTCCGCAAGGATGTGATTGTTGATTTGTTATGCTATAGGCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 72 bp GTGGCAAACTTGGTGGCCAAAAAGTGGTCAAACTCCTaGGACTCTAGCAATAGTTTGGACAGGTATTTTCGT +
Preference number: 6 (lower is better)
Translates to: VANLVAKKWSNS*DSSNSLDRYFR
Trigger: ACGAAAATACCTGTCCAAACTATTGCTAGAGTCTCAGGAGTTTGACCACTTTTTGGCCACCAAGTTTGCCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9
CDS TCA 72 bp GCAATAGTTTGGACAGGTATTTTCGTTCTTCTGTGGTaGACGTCTCCTTTTTCAGTTCCTCAAACCTTCTGG +
Preference number: 6 (lower is better)
Translates to: AIVWTGIFVLLW*TSPFSVPQTFW
Trigger: CCAGAAGGTTTGAGGAACTGAAAAAGGAGACGTTCACCACAGAAGAACGAAAATACCTGTCCAAACTATTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026924.7
ENSMUST00000095147.9