Pregenerated sensors for DGCR6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003531Ensembl transcript IDs: ENSMUST00000066027.14, ENSMUST00000076757.12, ENSMUST00000143343.8, ENSMUST00000151266.8, ENSMUST00000153123.3, ENSMUST00000155387.8
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGACCTGTTGGCAGCTGGACAGTAGCCCCCACACAGTCAAGGCTGTaGCACCCGCCAGCCATCCTAGGCAACGGAGGACAGCAAGGACCC | + |
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Preference number: 1 (lower is better) Translates to: RPVGSWTVAPTQSRL*HPPAILGNGGQQGP Trigger: GGGTCCTTGCTGTCCTCCGTTGCCTAGGATGGCTGGCGGGTGCCACAGCCTTGACTGTGTGGGGGCTACTGTCCAGCTGCCAACAGGTCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| 3UTR CCA 90 bp | CCAGGATCTAATCAGCCCCTCAGAGAGATCAGACCTGTTGGCAGCTaGACAGTAGCCCCCACACAGTCAAGGCTGTGGCACCCGCCAGCC | + |
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Preference number: 1 (lower is better) Translates to: PGSNQPLREIRPVGS*TVAPTQSRLWHPPA Trigger: GGCTGGCGGGTGCCACAGCCTTGACTGTGTGGGGGCTACTGTCCAGCTGCCAACAGGTCTGATCTCTCTGAGGGGCTGATTAGATCCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| 3UTR CCA 90 bp | GTTCTTTATTTTCTAGGCCATCCTCTGGCTTCTTCCATCCAGGGCTaGGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCA | + |
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Preference number: 1 (lower is better) Translates to: VLYFLGHPLASSIQG*DCQGRGYTGIRQHP Trigger: TGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCCCAGCCCTGGATGGAAGAAGCCAGAGGATGGCCTAGAAAATAAAGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR-3UTR CCA 90 bp | GGGCTGGGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTAGAGATCAGACCTGTTaGCAGCTGGACAGTAGCCCC | + |
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Preference number: 2 (lower is better) Translates to: GLGLSREGLHRNKATPKPRDQTC*QLDSSP Trigger: GGGGCTACTGTCCAGCTGCCAACAGGTCTGATCTCT...AGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCCCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| 3UTR-3UTR TCA 90 bp | TGGGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGGAACTTCCCCTCCAAATCTaGACAGTGGATGGCAGCAGG | + |
|
Preference number: 2 (lower is better) Translates to: WDCQGRGYTGIRQHPSLELPLQI*TVDGSR Trigger: CCTGCTGCCATCCACTGTTCAGATTTGGAGGGGAAG...TTCCAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR-3UTR CCA 90 bp | GGGCTGGGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTTCCAAATCTGAACAGTaGATGGCAGCAGGCATAGCC | + |
|
Preference number: 2 (lower is better) Translates to: GLGLSREGLHRNKATPKPSKSEQ*MAAGIA Trigger: GGCTATGCCTGCTGCCATCCACTGTTCAGATTTGGA...AGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCCCAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR-3UTR TCA 90 bp | CAACACCCAAGCCTGGAAGGAATGTGGGATATGCCCAGAGGAGAAGGTGCTAGACTTCCCCTCCAAATCTaGACAGTGGATGGCAGCAGG | + |
|
Preference number: 2 (lower is better) Translates to: QHPSLEGMWDMPRGEGARLPLQI*TVDGSR Trigger: CCTGCTGCCATCCACTGTTCAGATTTGGAGGGGAAG...TCTAGCACCTTCTCCTCTGGGCATATCCCACATTCCTTCCAGGCTTGGGTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR-3UTR CCA 90 bp | CAACACCCAAGCCTGGAAGGAATGTGGGATATGCCCAGAGGAGAAGGTGCTAGAAGAGATCAGACCTGTTaGCAGCTGGACAGTAGCCCC | + |
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Preference number: 2 (lower is better) Translates to: QHPSLEGMWDMPRGEGARRDQTC*QLDSSP Trigger: GGGGCTACTGTCCAGCTGCCAACAGGTCTGATCTCT...TCTAGCACCTTCTCCTCTGGGCATATCCCACATTCCTTCCAGGCTTGGGTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| 3UTR-3UTR CCA 90 bp | GGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGGAAGGTCCAAATCTGAACAGTaGATGGCAGCAGGCATAGCC | + |
|
Preference number: 2 (lower is better) Translates to: GLSREGLHRNKATPKPGRSKSEQ*MAAGIA Trigger: GGCTATGCCTGCTGCCATCCACTGTTCAGATTTGGA...CCTTCCAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR-3UTR TCA 90 bp | AACACCCAAGCCTGGAAGGAATGTGGGATATGCCCAGAGGAGAAGGTGCTAGAACTTCCCCTCCAAATCTaGACAGTGGATGGCAGCAGG | + |
|
Preference number: 2 (lower is better) Translates to: NTQAWKECGICPEEKVLELPLQI*TVDGSR Trigger: CCTGCTGCCATCCACTGTTCAGATTTGGAGGGGAAG...TTCTAGCACCTTCTCCTCTGGGCATATCCCACATTCCTTCCAGGCTTGGGTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR-3UTR TCA 90 bp | CTAGAACCAATATTCCCACTCAGCATCCAGTCAAGGGGCCTTCTCATGACATCACTTCCCCTCCAAATCTaGACAGTGGATGGCAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: LEPIFPLSIQSRGLLMTSLPLQI*TVDGSR Trigger: CCTGCTGCCATCCACTGTTCAGATTTGGAGGGGAAG...TGATGTCATGAGAAGGCCCCTTGACTGGATGCTGAGTGGGAATATTGGTTCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR-3UTR CCA 90 bp | GGTGCTAGAACCAATATTCCCACTCAGCATCCAGTCAAGGGGCCTTCTCATGACTCCAAATCTGAACAGTaGATGGCAGCAGGCATAGCC | + |
|
Preference number: 2 (lower is better) Translates to: GARTNIPTQHPVKGPSHDSKSEQ*MAAGIA Trigger: GGCTATGCCTGCTGCCATCCACTGTTCAGATTTGGA...GTCATGAGAAGGCCCCTTGACTGGATGCTGAGTGGGAATATTGGTTCTAGCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR CCA 72 bp | GGCAGCTGGACAGTAGCCCCCACACAGTCAAGGCTGTaGCACCCGCCAGCCATCCTAGGCAACGGAGGACAG | + |
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Preference number: 3 (lower is better) Translates to: GSWTVAPTQSRL*HPPAILGNGGQ Trigger: CTGTCCTCCGTTGCCTAGGATGGCTGGCGGGTGCCACAGCCTTGACTGTGTGGGGGCTACTGTCCAGCTGCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| 3UTR-3UTR CAA 90 bp | CTGGCTTCTTCCATCCAGGGCTGGGACTGTCAAGGGAGGGGCTACACAGGAATAATGACATCATTCCTATaGCTTGGGCCCTTCCCCTCC | + |
|
Preference number: 3 (lower is better) Translates to: LASSIQGWDCQGRGYTGIMTSFL*LGPFPS Trigger: GGAGGGGAAGGGCCCAAGCAATAGGAATGATGTCAT...TATTCCTGTGTAGCCCCTCCCTTGACAGTCCCAGCCCTGGATGGAAGAAGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR CCA 72 bp | TTTCTAGGCCATCCTCTGGCTTCTTCCATCCAGGGCTaGGACTGTCAAGGGAGGGGCTACACAGGAATAAGG | + |
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Preference number: 3 (lower is better) Translates to: FLGHPLASSIQG*DCQGRGYTGIR Trigger: CCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCCCAGCCCTGGATGGAAGAAGCCAGAGGATGGCCTAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR-3UTR CAA 90 bp | CTGGGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGGACATCATTCCTATTGCTaGGGCCCTTCCCCTCCAAAT | + |
|
Preference number: 3 (lower is better) Translates to: LGLSREGLHRNKATPKPGHHSYC*GPSPPN Trigger: ATTTGGAGGGGAAGGGCCCAAGCAATAGGAATGATG...TCCAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR TCA 72 bp | TATTCCCACTCAGCATCCAGTCAAGGGGCCTTCTCATaGCATCATTCCTATTGCTTGGGCCCTTCCCCTCCA | + |
|
Preference number: 3 (lower is better) Translates to: YSHSASSQGAFS*HHSYCLGPSPP Trigger: TGGAGGGGAAGGGCCCAAGCAATAGGAATGATGTCATGAGAAGGCCCCTTGACTGGATGCTGAGTGGGAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR GCA 72 bp | ACTCCAGTAGCTAAAGTCCTAGCTGGGCGTGTGGCTTaGCTCCTGCTAAGCTCTTCAGTTTCATACAGCGGT | + |
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Preference number: 3 (lower is better) Translates to: TPVAKVLAGRVA*LLLSSSVSYSG Trigger: ACCGCTGTATGAAACTGAAGAGCTTAGCAGGAGGCAAGCCACACGCCCAGCTAGGACTTTAGCTACTGGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155387.8 |
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| 3UTR-3UTR CAA 90 bp | TGCCCAGAGGAGAAGGTGCTAGAACCAATATTCCCACTCAGCATCCAGTCAAGGCATCATTCCTATTGCTaGGGCCCTTCCCCTCCAAAT | + |
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Preference number: 3 (lower is better) Translates to: CPEEKVLEPIFPLSIQSRHHSYC*GPSPPN Trigger: ATTTGGAGGGGAAGGGCCCAAGCAATAGGAATGATG...CCTTGACTGGATGCTGAGTGGGAATATTGGTTCTAGCACCTTCTCCTCTGGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| 3UTR CCA 72 bp | ACAGGAATAAGGCAACACCCAAGCCTGGAAGGAATGTaGGATATGCCCAGAGGAGAAGGTGCTAGAACCAAT | + |
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Preference number: 3 (lower is better) Translates to: TGIRQHPSLEGM*DMPRGEGARTN Trigger: ATTGGTTCTAGCACCTTCTCCTCTGGGCATATCCCACATTCCTTCCAGGCTTGGGTGTTGCCTTATTCCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | GTGGCACCCGCCAGCCATCCTAGGCAACGGAGGACAGCAAGGACCCCCTGCTTGTGCTGGGCTTCCAGGTaGTTCTGCCTTAGAGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: VAPASHPRQRRTARTPCLCWASR*FCLRVC Trigger: ACAGACTCTAAGGCAGAAGCACCTGGAAGCCCAGCA...CAAGCAGGGGGTCCTTGCTGTCCTCCGTTGCCTAGGATGGCTGGCGGGTGCCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR TCA 90 bp | AGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGGAAGGAATGTGGGATCCAGCTCACGCTGCTaGGCTGCCTGGAGCACTGGC | + |
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Preference number: 4 (lower is better) Translates to: REGLHRNKATPKPGRNVGSSSRC*AAWSTG Trigger: GCCAGTGCTCCAGGCAGCTCAGCAGCGTGAGCTGGA...TCCCACATTCCTTCCAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | GGCTGGGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGTTTCGGTCCATAGCCTaGTGCTCCTCCCGGATCCGA | + |
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Preference number: 4 (lower is better) Translates to: GWDCQGRGYTGIRQHPSLFRSIA*CSSRIR Trigger: TCGGATCCGGGAGGAGCAGCAGGCTATGGACCGAAA...CAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCCCAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTTTTCGGTCCATAGCCTaGTGCTCCTCCCGGATCCGA | + |
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Preference number: 4 (lower is better) Translates to: GLGLSREGLHRNKATPKPFRSIA*CSSRIR Trigger: TCGGATCCGGGAGGAGCAGCAGGCTATGGACCGAAA...AGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCCCAGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | GGCTGGGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGGCTTGGTCACAGAGCTaGCTTTCCCACTTGGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: GWDCQGRGYTGIRQHPSLAWSQS*LSHLAA Trigger: GGCTGCCAAGTGGGAAAGGCAGCTCTGTGACCAAGC...CAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCCCAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153123.3 |
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| CDS-3UTR CCA 90 bp | ATCAGACCTGTTGGCAGCTGGACAGTAGCCCCCACACAGTCAAGGCTGTGGCACGGATCCGATGTTCCATaGCCTCCAGCTCACGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: IRPVGSWTVAPTQSRLWHGSDVP*PPAHAA Trigger: AGCAGCGTGAGCTGGAGGCCATGGAACATCGGATCC...GTGCCACAGCCTTGACTGTGTGGGGGCTACTGTCCAGCTGCCAACAGGTCTGAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 |
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| CDS-3UTR TCA 90 bp | AGGCAACACCCAAGCCTGGAAGGAATGTGGGATATGCCCAGAGGAGAAGGTGCTTTCCATGGCCTGCCATaGCTCCAGCTCACGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: RQHPSLEGMWDMPRGEGAFHGLP*LQLTLL Trigger: CAGCAGCGTGAGCTGGAGTCATGGCAGGCCATGGAA...AGCACCTTCTCCTCTGGGCATATCCCACATTCCTTCCAGGCTTGGGTGTTGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066027.14 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | GGGCCCTTCCCCTCCAAATCTGAACAGTGGATGGCAGCAGGCATAGCCAGGATCACTCGGTGTTCGTTCTaGAGCCGCAGTCTCTGGTTG | + |
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Preference number: 4 (lower is better) Translates to: GPFPSKSEQWMAAGIARITRCSF*SRSLWL Trigger: CAACCAGAGACTGCGGCTGCAGAACGAACACCGAGT...GATCCTGGCTATGCCTGCTGCCATCCACTGTTCAGATTTGGAGGGGAAGGGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR CCA 90 bp | GGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGGAAGGCAAGGACCCCCTGCTTaGTCACAGAGCTGCCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: GLSREGLHRNKATPKPGRQGPPA*SQSCLS Trigger: GGAAAGGCAGCTCTGTGACCAAGCAGGGGGTCCTTG...CCTTCCAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153123.3 |
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| CDS-3UTR GCA 90 bp | CCTCAGAGAGATCAGACCTGTTGGCAGCTGGACAGTAGCCCCCACACAGTCAAGACTCGGTGTTCGTTCTaGAGCCGCAGTCTCTGGTTG | + |
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Preference number: 4 (lower is better) Translates to: PQRDQTCWQLDSSPHTVKTRCSF*SRSLWL Trigger: CAACCAGAGACTGCGGCTGCAGAACGAACACCGAGT...CTTGACTGTGTGGGGGCTACTGTCCAGCTGCCAACAGGTCTGATCTCTCTGAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGCTTCCAGGTGCTTCTaGCTTAGAGTCTGTCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: GLGLSREGLHRNKATPKPASRCF*LRVCLS Trigger: GCTCAGACAGACTCTAAGGCAGAAGCACCTGGAAGC...AGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCCCAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | CTCTGGCTTCTTCCATCCAGGGCTGGGACTGTCAAGGGAGGGGCTACACAGGAATGCTGGGCTTCCAGGTaGTTCTGCCTTAGAGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: LWLLPSRAGTVKGGATQECWASR*FCLRVC Trigger: ACAGACTCTAAGGCAGAAGCACCTGGAAGCCCAGCA...TTCCTGTGTAGCCCCTCCCTTGACAGTCCCAGCCCTGGATGGAAGAAGCCAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | AAGGCCTCAGGGCTTGTCTGTCACTCTGTTGGCGCCAACATGACCAGAGTCACTCGATGTTCCATGGCCTaGCATGACTCCAGCTCACGC | + |
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Preference number: 4 (lower is better) Translates to: KASGLVCHSVGANMTRVTRCSMA*HDSSSR Trigger: GCGTGAGCTGGAGTCATGGCAGGCCATGGAACATCG...AGTGACTCTGGTCATGTTGGCGCCAACAGAGTGACAGACAAGCCCTGAGGCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155387.8 |
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| CDS-3UTR TCA 90 bp | ATCAGACCTGTTGGCAGCTGGACAGTAGCCCCCACACAGTCAAGGCTGTGGCACAGAGGCTCTTCTCAGTaGGGTGCTGAATCTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: IRPVGSWTVAPTQSRLWHRGSSQ*GAESPE Trigger: TTCTGGAGATTCAGCACCTCACTGAGAAGAGCCTCT...GTGCCACAGCCTTGACTGTGTGGGGGCTACTGTCCAGCTGCCAACAGGTCTGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR TCA 90 bp | CTAGAACCAATATTCCCACTCAGCATCCAGTCAAGGGGCCTTCTCATGACATCAGTTCCATGGCGCTGCTaGGCTGCCTGGAGCACTGGC | + |
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Preference number: 4 (lower is better) Translates to: LEPIFPLSIQSRGLLMTSVPWRC*AAWSTG Trigger: GCCAGTGCTCCAGGCAGCTCAGCAGCGCCATGGAAC...TGATGTCATGAGAAGGCCCCTTGACTGGATGCTGAGTGGGAATATTGGTTCTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153123.3 |
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| CDS-3UTR GCA 90 bp | AGAGATCAGACCTGTTGGCAGCTGGACAGTAGCCCCCACACAGTCAAGGCTGTGGCTTCCAGGTGCTTCTaGCTTAGAGTCTGTCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: RDQTCWQLDSSPHTVKAVASRCF*LRVCLS Trigger: GCTCAGACAGACTCTAAGGCAGAAGCACCTGGAAGC...CACAGCCTTGACTGTGTGGGGGCTACTGTCCAGCTGCCAACAGGTCTGATCTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | GGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGGAAGGGCTTCCAGGTGCTTCTaGCTTAGAGTCTGTCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: GLSREGLHRNKATPKPGRASRCF*LRVCLS Trigger: GCTCAGACAGACTCTAAGGCAGAAGCACCTGGAAGC...CCTTCCAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | CCCAGAGGAGAAGGTGCTAGAACCAATATTCCCACTCAGCATCCAGTCAAGGGGTTTCGGTCCATAGCCTaGTGCTCCTCCCGGATCCGA | + |
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Preference number: 4 (lower is better) Translates to: PRGEGARTNIPTQHPVKGFRSIA*CSSRIR Trigger: TCGGATCCGGGAGGAGCAGCAGGCTATGGACCGAAA...CCCCTTGACTGGATGCTGAGTGGGAATATTGGTTCTAGCACCTTCTCCTCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| CDS-3UTR CCA 90 bp | TGGGACTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGGAAGGATCCGATGTTCCATaGCCTGCCATGACTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: WDCQGRGYTGIRQHPSLEGSDVP*PAMTPA Trigger: AGCTGGAGTCATGGCAGGCCATGGAACATCGGATCC...TTCCAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAGTCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066027.14 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | CTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGGAAGGAATACTCGGTGTTCGTTCTaGAGCCGCAGTCTCTGGTTG | + |
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Preference number: 4 (lower is better) Translates to: LSREGLHRNKATPKPGRNTRCSF*SRSLWL Trigger: CAACCAGAGACTGCGGCTGCAGAACGAACACCGAGT...ATTCCTTCCAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | CAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGGAAGGAATGTGGGCTTCCAGGTGCTTCTaGCTTAGAGTCTGTCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: QGRGYTGIRQHPSLEGMWASRCF*LRVCLS Trigger: GCTCAGACAGACTCTAAGGCAGAAGCACCTGGAAGC...CCACATTCCTTCCAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | AGAGGAGAAGGTGCTAGAACCAATATTCCCACTCAGCATCCAGTCAAGGGGCCTCGATGTTCCATGGCCTaGCATGACTCCAGCTCACGC | + |
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Preference number: 4 (lower is better) Translates to: RGEGARTNIPTQHPVKGPRCSMA*HDSSSR Trigger: GCGTGAGCTGGAGTCATGGCAGGCCATGGAACATCG...AGGCCCCTTGACTGGATGCTGAGTGGGAATATTGGTTCTAGCACCTTCTCCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066027.14 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | AAGGGGCCTTCTCATGACATCATTCCTATTGCTTGGGCCCTTCCCCTCCAAATCTTTCGGTCCATAGCCTaGTGCTCCTCCCGGATCCGA | + |
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Preference number: 4 (lower is better) Translates to: KGPSHDIIPIAWALPLQIFRSIA*CSSRIR Trigger: TCGGATCCGGGAGGAGCAGCAGGCTATGGACCGAAA...GATTTGGAGGGGAAGGGCCCAAGCAATAGGAATGATGTCATGAGAAGGCCCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | AGGGGCCTTCTCATGACATCATTCCTATTGCTTGGGCCCTTCCCCTCCAAATCTTTTCGGTCCATAGCCTaGTGCTCCTCCCGGATCCGA | + |
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Preference number: 4 (lower is better) Translates to: RGLLMTSFLLLGPFPSKSFRSIA*CSSRIR Trigger: TCGGATCCGGGAGGAGCAGCAGGCTATGGACCGAAA...AGATTTGGAGGGGAAGGGCCCAAGCAATAGGAATGATGTCATGAGAAGGCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| CDS-3UTR CCA 90 bp | CATTCCTATTGCTTGGGCCCTTCCCCTCCAAATCTGAACAGTGGATGGCAGCAGGCTGCTGAAAGGAGCTaGCTGGTGCCATGCTCTCTA | + |
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Preference number: 4 (lower is better) Translates to: HSYCLGPSPPNLNSGWQQAAERS*LVPCSL Trigger: TAGAGAGCATGGCACCAGCCAGCTCCTTTCAGCAGC...CTGCTGCCATCCACTGTTCAGATTTGGAGGGGAAGGGCCCAAGCAATAGGAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076757.12 ENSMUST00000143343.8 |
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| CDS-3UTR GCA 90 bp | GGTGCTAGAACCAATATTCCCACTCAGCATCCAGTCAAGGGGCCTTCTCATGACACTCGGTGTTCGTTCTaGAGCCGCAGTCTCTGGTTG | + |
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Preference number: 4 (lower is better) Translates to: GARTNIPTQHPVKGPSHDTRCSF*SRSLWL Trigger: CAACCAGAGACTGCGGCTGCAGAACGAACACCGAGT...GTCATGAGAAGGCCCCTTGACTGGATGCTGAGTGGGAATATTGGTTCTAGCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR CCA 90 bp | GGTGCTAGAACCAATATTCCCACTCAGCATCCAGTCAAGGGGCCTTCTCATGACGGATCCGATGTTCCATaGCCTGCCATGACTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: GARTNIPTQHPVKGPSHDGSDVP*PAMTPA Trigger: AGCTGGAGTCATGGCAGGCCATGGAACATCGGATCC...GTCATGAGAAGGCCCCTTGACTGGATGCTGAGTGGGAATATTGGTTCTAGCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066027.14 ENSMUST00000155387.8 |
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| CDS-3UTR CCA 90 bp | GGCCTTCTCATGACATCATTCCTATTGCTTGGGCCCTTCCCCTCCAAATCTGAAGGATCCGATGTTCCATaGCCTCCAGCTCACGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: GLLMTSFLLLGPFPSKSEGSDVP*PPAHAA Trigger: AGCAGCGTGAGCTGGAGGCCATGGAACATCGGATCC...TTCAGATTTGGAGGGGAAGGGCCCAAGCAATAGGAATGATGTCATGAGAAGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 |
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| CDS-3UTR TCA 90 bp | CTGTCAAGGGAGGGGCTACACAGGAATAAGGCAACACCCAAGCCTGGAAGGAATAGAGGCTCTTCTCAGTaGGGTGCTGAATCTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: LSREGLHRNKATPKPGRNRGSSQ*GAESPE Trigger: TTCTGGAGATTCAGCACCTCACTGAGAAGAGCCTCT...ATTCCTTCCAGGCTTGGGTGTTGCCTTATTCCTGTGTAGCCCCTCCCTTGACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR TCA 90 bp | ACAGACACAAACCATGTCCTGGGTTCTTTATTTTCTAGGCCATCCTCTGGCTTCTTCCATGGCCTGCCATaGCTCCAGCTCACGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TDTNHVLGSLFSRPSSGFFHGLP*LQLTLL Trigger: CAGCAGCGTGAGCTGGAGTCATGGCAGGCCATGGAA...GAAGCCAGAGGATGGCCTAGAAAATAAAGAACCCAGGACATGGTTTGTGTCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066027.14 ENSMUST00000155387.8 |
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| CDS-3UTR TCA 90 bp | GAGGAGAAGGTGCTAGAACCAATATTCCCACTCAGCATCCAGTCAAGGGGCCTTAGAGGCTCTTCTCAGTaGGGTGCTGAATCTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: EEKVLEPIFPLSIQSRGLRGSSQ*GAESPE Trigger: TTCTGGAGATTCAGCACCTCACTGAGAAGAGCCTCT...AAGGCCCCTTGACTGGATGCTGAGTGGGAATATTGGTTCTAGCACCTTCTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | CTTCTCATGACATCATTCCTATTGCTTGGGCCCTTCCCCTCCAAATCTGAACAGACTCGGTGTTCGTTCTaGAGCCGCAGTCTCTGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: LLMTSFLLLGPFPSKSEQTRCSF*SRSLWL Trigger: CAACCAGAGACTGCGGCTGCAGAACGAACACCGAGT...CTGTTCAGATTTGGAGGGGAAGGGCCCAAGCAATAGGAATGATGTCATGAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | CAAGCCTGGAAGGAATGTGGGATATGCCCAGAGGAGAAGGTGCTAGAACCAATATGCTGGGCTTCCAGGTaGTTCTGCCTTAGAGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: QAWKECGICPEEKVLEPICWASR*FCLRVC Trigger: ACAGACTCTAAGGCAGAAGCACCTGGAAGCCCAGCA...TATTGGTTCTAGCACCTTCTCCTCTGGGCATATCCCACATTCCTTCCAGGCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| 3UTR CAA 72 bp | ATCCAGTCAAGGGGCCTTCTCATGACATCATTCCTATaGCTTGGGCCCTTCCCCTCCAAATCTGAACAGTGG | + |
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Preference number: 4 (lower is better) Translates to: IQSRGLLMTSFL*LGPFPSKSEQW Trigger: CCACTGTTCAGATTTGGAGGGGAAGGGCCCAAGCAATAGGAATGATGTCATGAGAAGGCCCCTTGACTGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000153123.3 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | CTAGAACCAATATTCCCACTCAGCATCCAGTCAAGGGGCCTTCTCATGACATCATGCTGGGCTTCCAGGTaGTTCTGCCTTAGAGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: LEPIFPLSIQSRGLLMTSCWASR*FCLRVC Trigger: ACAGACTCTAAGGCAGAAGCACCTGGAAGCCCAGCA...TGATGTCATGAGAAGGCCCCTTGACTGGATGCTGAGTGGGAATATTGGTTCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| CDS-3UTR GCA 90 bp | GCGACATCCATACTTTTATTCTACATTCCAGATGCATGCATGGTCCCTGGGACCTGCTGGGCTTCCAGGTaGTTCTGCCTTAGAGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: ATSILLFYIPDACMVPGTCWASR*FCLRVC Trigger: ACAGACTCTAAGGCAGAAGCACCTGGAAGCCCAGCA...GGTCCCAGGGACCATGCATGCATCTGGAATGTAGAATAAAAGTATGGATGTCGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155387.8 |
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| CDS-3UTR TCA 90 bp | CTTCTCATGACATCATTCCTATTGCTTGGGCCCTTCCCCTCCAAATCTGAACAGAGAGGCTCTTCTCAGTaGGGTGCTGAATCTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: LLMTSFLLLGPFPSKSEQRGSSQ*GAESPE Trigger: TTCTGGAGATTCAGCACCTCACTGAGAAGAGCCTCT...CTGTTCAGATTTGGAGGGGAAGGGCCCAAGCAATAGGAATGATGTCATGAGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000066027.14 ENSMUST00000076757.12 ENSMUST00000143343.8 ENSMUST00000151266.8 ENSMUST00000155387.8 |
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| 3UTR CAA 72 bp | TGCCTCCTGCTAAGCTCTTCAGTTTCATACAGCGGTTaGGAGGCTGTATTAATTAGGGACCTGACAATGCAA | + |
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Preference number: 4 (lower is better) Translates to: CLLLSSSVSYSG*EAVLIRDLTMQ Trigger: TTGCATTGTCAGGTCCCTAATTAATACAGCCTCCAAACCGCTGTATGAAACTGAAGAGCTTAGCAGGAGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155387.8 |
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| CDS-3UTR CAA 90 bp | CAACACCCAAGCCTGGAAGGAATGTGGGATATGCCCAGAGGAGAAGGTGCTAGAGCAAGGACCCCCTGCTaGGTCACAGAGCTGCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: QHPSLEGMWDMPRGEGARARTPC*VTELPF Trigger: GAAAGGCAGCTCTGTGACCAAGCAGGGGGTCCTTGC...TCTAGCACCTTCTCCTCTGGGCATATCCCACATTCCTTCCAGGCTTGGGTGTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153123.3 |
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| CDS CAA 90 bp | CCCGCCAGCCATCCTAGGCAACGGAGGACAGCAAGGACCCCCTGCTaGGTCACAGAGCTGCCTTTCCCACTTGGCAGCCCCTCTGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: PASHPRQRRTARTPC*VTELPFPLGSPSAA Trigger: TGCAGCAGAGGGGCTGCCAAGTGGGAAAGGCAGCTCTGTGACCAAGCAGGGGGTCCTTGCTGTCCTCCGTTGCCTAGGATGGCTGGCGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153123.3 |
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| CDS TCA 72 bp | CTGCTCCTCCCGGATCCGATGTTCCATGGCCTGCCATaGCTCCAGCTCACGCTGCTGAGCTGCCTGGAGCAC | + |
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Preference number: 6 (lower is better) Translates to: LLLPDPMFHGLP*LQLTLLSCLEH Trigger: GTGCTCCAGGCAGCTCAGCAGCGTGAGCTGGAGTCATGGCAGGCCATGGAACATCGGATCCGGGAGGAGCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066027.14 ENSMUST00000155387.8 |
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| CDS CAA 72 bp | CATCCTAGGCAACGGAGGACAGCAAGGACCCCCTGCTaGGTCACAGAGCTGCCTTTCCCACTTGGCAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: HPRQRRTARTPC*VTELPFPLGSP Trigger: GGGGCTGCCAAGTGGGAAAGGCAGCTCTGTGACCAAGCAGGGGGTCCTTGCTGTCCTCCGTTGCCTAGGATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153123.3 |
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| CDS GCA 72 bp | AGCCATCCTAGGCAACGGAGGACAGCAAGGACCCCCTaGTTGGTCACAGAGCTGCCTTTCCCACTTGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SHPRQRRTARTP*LVTELPFPLGS Trigger: GCTGCCAAGTGGGAAAGGCAGCTCTGTGACCAAGCAGGGGGTCCTTGCTGTCCTCCGTTGCCTAGGATGGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153123.3 |
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| CDS CCA 72 bp | ATCCTAGGCAACGGAGGACAGCAAGGACCCCCTGCTTaGTCACAGAGCTGCCTTTCCCACTTGGCAGCCCCT | + |
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Preference number: 6 (lower is better) Translates to: ILGNGGQQGPPA*SQSCLSHLAAP Trigger: AGGGGCTGCCAAGTGGGAAAGGCAGCTCTGTGACCAAGCAGGGGGTCCTTGCTGTCCTCCGTTGCCTAGGAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153123.3 |
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