Pregenerated sensors for DEXI (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038055Ensembl transcript IDs: ENSMUST00000038281.6, ENSMUST00000184863.8
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCCTGGCAGACACCTGGGTTGGGGCAGGAACCCTGTTGTTGGCATaGGCAGGCGGGCCTCTTCCTGGGGTCCCATCCCTGTCCAGATGG | + |
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Preference number: 1 (lower is better) Translates to: LLADTWVGAGTLLLA*AGGPLPGVPSLSRW Trigger: CCATCTGGACAGGGATGGGACCCCAGGAAGAGGCCCGCCTGCTCATGCCAACAACAGGGTTCCTGCCCCAACCCAGGTGTCTGCCAGGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR TCA 90 bp | GGGACAATTGGTCCCCCACCCAGTTATGCCAGGCTACCCAGCCAATaGGCCCCCAGAGCTCCACATCTCCACCTCACCAGTGCTGGGAGC | + |
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Preference number: 1 (lower is better) Translates to: GTIGPPPSYARLPSQ*APRAPHLHLTSAGS Trigger: GCTCCCAGCACTGGTGAGGTGGAGATGTGGAGCTCTGGGGGCTCATTGGCTGGGTAGCCTGGCATAACTGGGTGGGGGACCAATTGTCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR GCA 90 bp | CCAGAGCTCCACATCTCCACCTCACCAGTGCTGGGAGCACAAGCATaGCCAACATGCCTGGCTTTCTGTGTAGGTCCTGGGGATCGAACT | + |
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Preference number: 1 (lower is better) Translates to: PELHISTSPVLGAQA*PTCLAFCVGPGDRT Trigger: AGTTCGATCCCCAGGACCTACACAGAAAGCCAGGCATGTTGGGCATGCTTGTGCTCCCAGCACTGGTGAGGTGGAGATGTGGAGCTCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 90 bp | TCTCTCTACATCACCCTGGCTGTCCTGGAACTTTGTAGACCAGGCTaGCCTCGAACTAAGATCTTCTCTGAGGCACGCACCACCGCCGCC | + |
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Preference number: 1 (lower is better) Translates to: SLYITLAVLELCRPG*PRTKIFSEARTTAA Trigger: GGCGGCGGTGGTGCGTGCCTCAGAGAAGATCTTAGTTCGAGGCCAGCCTGGTCTACAAAGTTCCAGGACAGCCAGGGTGATGTAGAGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 90 bp | GTGCAGTATCTCAGTTCTGTCAACCTGGAGAGGTTAACCCCTGCCTaGCCCTGGCATAGCCCTCCTCAGAGTGACTCCCTGAAACTACGA | + |
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Preference number: 1 (lower is better) Translates to: VQYLSSVNLERLTPA*PWHSPPQSDSLKLR Trigger: TCGTAGTTTCAGGGAGTCACTCTGAGGAGGGCTATGCCAGGGCCAGGCAGGGGTTAACCTCTCCAGGTTGACAGAACTGAGATACTGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR CCA 90 bp | GCTGTTCTGGGACTCACTATGTATTCCAGTCCAGTCTCAAACTCATaGCAATGCTCCAGCCTCGGCTGTGGAACCACAGCACGCACCACA | + |
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Preference number: 1 (lower is better) Translates to: AVLGLTMYSSPVSNS*QCSSLGCGTTARTT Trigger: TGTGGTGCGTGCTGTGGTTCCACAGCCGAGGCTGGAGCATTGCCATGAGTTTGAGACTGGACTGGAATACATAGTGAGTCCCAGAACAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR TCA 90 bp | TACACAAAGCCCACACCACACACCCTTCCCCAGCACCTAAGCCAATaGGCCGCCATGCATCAGTCGACACTGGCAACGTGTTGGTTTTTA | + |
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Preference number: 1 (lower is better) Translates to: YTKPTPHTLPQHLSQ*AAMHQSTLATCWFL Trigger: TAAAAACCAACACGTTGCCAGTGTCGACTGATGCATGGCGGCTCATTGGCTTAGGTGCTGGGGAAGGGTGTGTGGTGTGGGCTTTGTGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 90 bp | TATCTCAGTTCTGTCAACCTGGAGAGGTTAACCCCTGCCTGGCCCTaGCATAGCCCTCCTCAGAGTGACTCCCTGAAACTACGATCAACA | + |
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Preference number: 1 (lower is better) Translates to: YLSSVNLERLTPAWP*HSPPQSDSLKLRST Trigger: TGTTGATCGTAGTTTCAGGGAGTCACTCTGAGGAGGGCTATGCCAGGGCCAGGCAGGGGTTAACCTCTCCAGGTTGACAGAACTGAGATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR CCA 90 bp | GAGATCCCTCTGTTAGAAGGATCCTTCTTGAGAAAGTTGAGTGGGTaGCTCAGCGAATTGGGTGCCAGCTTGACTAGGACCGGTCTGGTT | + |
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Preference number: 1 (lower is better) Translates to: EIPLLEGSFLRKLSG*LSELGASLTRTGLV Trigger: AACCAGACCGGTCCTAGTCAAGCTGGCACCCAATTCGCTGAGCCACCCACTCAACTTTCTCAAGAAGGATCCTTCTAACAGAGGGATCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR TCA 90 bp | AAGGAGGTCCAGCAGAGGGAGCTAGTGGAGAATAGAGGCAGAATTTaGACTCAGCCCAGTGGCAGACATTTTCATGGGCACATGCTTTCC | + |
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Preference number: 1 (lower is better) Translates to: KEVQQRELVENRGRI*TQPSGRHFHGHMLS Trigger: GGAAAGCATGTGCCCATGAAAATGTCTGCCACTGGGCTGAGTTCAAATTCTGCCTCTATTCTCCACTAGCTCCCTCTGCTGGACCTCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR TCA 90 bp | AGTAAGTCGGGAGAAGTTGATCTAGGCTCAGTCTTTAGTCCTTCCTaGCCTGAAGAAATGGCTGACAGCCACACCTCCTCATGGTGGCTT | + |
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Preference number: 1 (lower is better) Translates to: SKSGEVDLGSVFSPS*PEEMADSHTSSWWL Trigger: AAGCCACCATGAGGAGGTGTGGCTGTCAGCCATTTCTTCAGGTCAGGAAGGACTAAAGACTGAGCCTAGATCAACTTCTCCCGACTTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR TCA 90 bp | GTTGCTGCCCACCTCTGGCTAACACCCACTATTTGTTCTCTTCACTaGGATGAGGAAACAGGAACCAGAAACATTAAGCAGCCAGCCCAA | + |
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Preference number: 1 (lower is better) Translates to: VAAHLWLTPTICSLH*DEETGTRNIKQPAQ Trigger: TTGGGCTGGCTGCTTAATGTTTCTGGTTCCTGTTTCCTCATCTCAGTGAAGAGAACAAATAGTGGGTGTTAGCCAGAGGTGGGCAGCAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 90 bp | TCATGGTGGCTTTCCCGGGGATTCTGTGATTGTGATGTGAGTCTCTaGTGTTTCTCCAAAGTAGAGCACATTGGAGCAGAGGAAGGCTTT | + |
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Preference number: 1 (lower is better) Translates to: SWWLSRGFCDCDVSL*CFSKVEHIGAEEGF Trigger: AAAGCCTTCCTCTGCTCCAATGTGCTCTACTTTGGAGAAACACCAGAGACTCACATCACAATCACAGAATCCCCGGGAAAGCCACCATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CCA 90 bp | GAGCGGGGCCTTCGGAGGGCCTGGACACTCCCTGTCCCTGCGCCGAGTCCTCATGGTGCCCCCAACCAGTaGCAGCGGCATGGTACGGGC | + |
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Preference number: 2 (lower is better) Translates to: ERGLRRAWTLPVPAPSPHGAPNQ*QRHGTG Trigger: GCCCGTACCATGCCGCTGCCACTGGTTGGGGGCACC...ATGAGGACTCGGCGCAGGGACAGGGAGTGTCCAGGCCCTCCGAAGGCCCCGCTC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR-3UTR CCA 90 bp | TGCCGACAGAGTGGCCTGAGAATGAGCCCATTTGTCACTTCAGCTCTCCATGTCCCAGACCCAGGACAGTaGAGAGCCGGGTGGCAGGCG | + |
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Preference number: 2 (lower is better) Translates to: CRQSGLRMSPFVTSALHVPDPGQ*RAGWQA Trigger: CGCCTGCCACCCGGCTCTCCACTGTCCTGGGTCTGG...GACATGGAGAGCTGAAGTGACAAATGGGCTCATTCTCAGGCCACTCTGTCGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR-3UTR CCA 90 bp | TCTCTGAGGCACGCACCACCGCCGCCTTCCGTGGGAACCTTTTTGACTGACCGTAAGAGTTGCGGATGGTaGAAGGCAAGTGGGGAACAG | + |
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Preference number: 2 (lower is better) Translates to: SLRHAPPPPSVGTFLTDRKSCGW*KASGEQ Trigger: CTGTTCCCCACTTGCCTTCCACCATCCGCAACTCTT...ACGGTCAGTCAAAAAGGTTCCCACGGAAGGCGGCGGTGGTGCGTGCCTCAGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CCA 90 bp | TTAGTCCTTCCTGACCTGAAGAAATGGCTGACAGCCACACCTCCTCATGGTGGCCACAGGGCCTCTTCCTaGGGTCCCATCCCTGTCCAG | + |
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Preference number: 2 (lower is better) Translates to: LVLPDLKKWLTATPPHGGHRASS*GPIPVQ Trigger: CTGGACAGGGATGGGACCCCAGGAAGAGGCCCTGTG...GCCACCATGAGGAGGTGTGGCTGTCAGCCATTTCTTCAGGTCAGGAAGGACTAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCTGAGGCACGCACCACCGCCGCCTTCCGTGGGAACCTTTTTGACTGACCGTGCAAACTGGGACAATTaGTCCCCCACCCAGTTATGC | + |
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Preference number: 2 (lower is better) Translates to: SLRHAPPPPSVGTFLTDRANWDN*SPTQLC Trigger: GCATAACTGGGTGGGGGACCAATTGTCCCAGTTTGC...ACGGTCAGTCAAAAAGGTTCCCACGGAAGGCGGCGGTGGTGCGTGCCTCAGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCTGAGGCACGCACCACCGCCGCCTTCCGTGGGAACCTTTTTGACTGACCGTATCTGGCAGCGGAACTaGATCAGTACGTGTTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: SLRHAPPPPSVGTFLTDRIWQRN*ISTCSR Trigger: CCTGGAACACGTACTGATCCAGTTCCGCTGCCAGAT...ACGGTCAGTCAAAAAGGTTCCCACGGAAGGCGGCGGTGGTGCGTGCCTCAGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR TCA 90 bp | ACCTCCTCATGGTGGCTTTCCCGGGGATTCTGTGATTGTGATGTGAGTCTCTGGAGGCTACCCAGCCAATaGGCCCCCAGAGCTCCACAT | + |
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Preference number: 2 (lower is better) Translates to: TSSWWLSRGFCDCDVSLWRLPSQ*APRAPH Trigger: ATGTGGAGCTCTGGGGGCTCATTGGCTGGGTAGCCT...CCAGAGACTCACATCACAATCACAGAATCCCCGGGAAAGCCACCATGAGGAGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CCA 90 bp | CAGCTCTCCATGTCCTTCCCAGAGGTTAAGTGGGGGAGGCAGGTGCAGCTGGGGATGGTGGAAGGCAAGTaGGGAACAGTAATCACGACA | + |
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Preference number: 2 (lower is better) Translates to: QLSMSFPEVKWGRQVQLGMVEGK*GTVITT Trigger: TGTCGTGATTACTGTTCCCCACTTGCCTTCCACCAT...CCCCAGCTGCACCTGCCTCCCCCACTTAACCTCTGGGAAGGACATGGAGAGCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR-3UTR TCA 90 bp | TCTCTGAGGCACGCACCACCGCCGCCTTCCGTGGGAACCTTTTTGACTGACCGTAGAGGAAGGCTTTGGTaGGAACATAGAGATCCCTCT | + |
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Preference number: 2 (lower is better) Translates to: SLRHAPPPPSVGTFLTDRRGRLW*EHRDPS Trigger: AGAGGGATCTCTATGTTCTCACCAAAGCCTTCCTCT...ACGGTCAGTCAAAAAGGTTCCCACGGAAGGCGGCGGTGGTGCGTGCCTCAGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR GCA 90 bp | AACCTTTATAAAGACCCTACTGTGCACCAGCCCAGAAGGTCCTTAGCCTGCGGCTCTCCACCTCACCAGTaGTGGGAGCACAAGCATGCC | + |
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Preference number: 2 (lower is better) Translates to: NLYKDPTVHQPRRSLACGSPPHQ*WEHKHA Trigger: GGCATGCTTGTGCTCCCAGCACTGGTGAGGTGGAGA...GCCGCAGGCTAAGGACCTTCTGGGCTGGTGCACAGTAGGGTCTTTATAAAGGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CCA 90 bp | AGATTTCTAGCCAGGGAAGCATGGCCTTCCCAGTGCAGTATCTCAGTTCTGTCAACCCCTGCCTGGCCCTaGCATAGCCCTCCTCAGAGT | + |
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Preference number: 2 (lower is better) Translates to: RFLAREAWPSQCSISVLSTPAWP*HSPPQS Trigger: ACTCTGAGGAGGGCTATGCCAGGGCCAGGCAGGGGT...TGACAGAACTGAGATACTGCACTGGGAAGGCCATGCTTCCCTGGCTAGAAATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR-3UTR TCA 90 bp | AACCTTTATAAAGACCCTACTGTGCACCAGCCCAGAAGGTCCTTAGCCTGCGGCCGAGGCTTGACAATTTaGGTTCTGTCCTCGGGACCT | + |
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Preference number: 2 (lower is better) Translates to: NLYKDPTVHQPRRSLACGRGLTI*VLSSGP Trigger: AGGTCCCGAGGACAGAACTCAAATTGTCAAGCCTCG...GCCGCAGGCTAAGGACCTTCTGGGCTGGTGCACAGTAGGGTCTTTATAAAGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGAAATTAAGGTGGAGAGAGATGAAGTGGCCTCAAGGCTGAGTCAGATGGCACCACCTCACCAGTGCTaGGAGCACAAGCATGCCCAA | + |
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Preference number: 2 (lower is better) Translates to: EEIKVERDEVASRLSQMAPPHQC*EHKHAQ Trigger: TTGGGCATGCTTGTGCTCCCAGCACTGGTGAGGTGG...TGCCATCTGACTCAGCCTTGAGGCCACTTCATCTCTCTCCACCTTAATTTCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CCA 90 bp | AACTTTGTAGACCAGGCTGGCCTCGAACTAAGATCTTCTCTGAGGCACGCACCACACACCTCCTCATGGTaGCTTTCCCGGGGATTCTGT | + |
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Preference number: 2 (lower is better) Translates to: NFVDQAGLELRSSLRHAPHTSSW*LSRGFC Trigger: ACAGAATCCCCGGGAAAGCCACCATGAGGAGGTGTG...TGGTGCGTGCCTCAGAGAAGATCTTAGTTCGAGGCCAGCCTGGTCTACAAAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CCA 90 bp | AATAGATTTCTAGCCAGGGAAGCATGGCCTTCCCAGTGCAGTATCTCAGTTCTGTTCCCAGAGGTTAAGTaGGGGAGGCAGGTGCAGCTG | + |
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Preference number: 2 (lower is better) Translates to: NRFLAREAWPSQCSISVLFPEVK*GRQVQL Trigger: CAGCTGCACCTGCCTCCCCCACTTAACCTCTGGGAA...CAGAACTGAGATACTGCACTGGGAAGGCCATGCTTCCCTGGCTAGAAATCTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR-3UTR CCA 90 bp | GCCACCAAGCCTGATGAGCTGAATTTAAGCCCCAGGAGTCAGGTAGTGGGAAGACTTGAGAAAGTTGAGTaGGTGGCTCAGCGAATTGGG | + |
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Preference number: 2 (lower is better) Translates to: ATKPDELNLSPRSQVVGRLEKVE*VAQRIG Trigger: CCCAATTCGCTGAGCCACCCACTCAACTTTCTCAAG...TCTTCCCACTACCTGACTCCTGGGGCTTAAATTCAGCTCATCAGGCTTGGTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR GCA 90 bp | ACAAGGTCTTTTGTAGCCCAGGCTGTTCTGGGACTCACTATGTATTCCAGTCCACTGGGAGCACAAGCATaGCCAACATGCCTGGCTTTC | + |
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Preference number: 2 (lower is better) Translates to: TRSFVAQAVLGLTMYSSPLGAQA*PTCLAF Trigger: GAAAGCCAGGCATGTTGGGCATGCTTGTGCTCCCAG...TGGACTGGAATACATAGTGAGTCCCAGAACAGCCTGGGCTACAAAAGACCTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CCA 90 bp | ATTTCTAGCCAGGGAAGCATGGCCTTCCCAGTGCAGTATCTCAGTTCTGTCAACAAGAGTTGCGGATGGTaGAAGGCAAGTGGGGAACAG | + |
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Preference number: 2 (lower is better) Translates to: ISSQGSMAFPVQYLSSVNKSCGW*KASGEQ Trigger: CTGTTCCCCACTTGCCTTCCACCATCCGCAACTCTT...GTTGACAGAACTGAGATACTGCACTGGGAAGGCCATGCTTCCCTGGCTAGAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR CAA 90 bp | GAGAACATAGAGATCCCTCTGTTAGAAGGATCCTTCTTGAGAAAGTaGAGTGGGTGGCTCAGCGAATTGGGTGCCAGCTTGACTAGGACC | + |
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Preference number: 2 (lower is better) Translates to: ENIEIPLLEGSFLRK*SGWLSELGASLTRT Trigger: GGTCCTAGTCAAGCTGGCACCCAATTCGCTGAGCCACCCACTCAACTTTCTCAAGAAGGATCCTTCTAACAGAGGGATCTCTATGTTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CAA 90 bp | GGCTTTGGTGAGAACATAGAGATCCCTCTGTTAGAAGGATCCTTCTaGAGAAAGTTGAGTGGGTGGCTCAGCGAATTGGGTGCCAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: GFGENIEIPLLEGSF*RKLSGWLSELGASL Trigger: CAAGCTGGCACCCAATTCGCTGAGCCACCCACTCAACTTTCTCAAGAAGGATCCTTCTAACAGAGGGATCTCTATGTTCTCACCAAAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR TCA 90 bp | TTAGTCCTTCCTGACCTGAAGAAATGGCTGACAGCCACACCTCCTCATGGTGGCATCGAACTCGAGGCTTaGCAATTTGAGTTCTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: LVLPDLKKWLTATPPHGGIELEA*QFEFCP Trigger: AGGACAGAACTCAAATTGTCAAGCCTCGAGTTCGAT...GCCACCATGAGGAGGTGTGGCTGTCAGCCATTTCTTCAGGTCAGGAAGGACTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR GCA 90 bp | TTAGTCCTTCCTGACCTGAAGAAATGGCTGACAGCCACACCTCCTCATGGTGGCACTGAGAGTCTTGCATaGTTAGGATCCACTCCATCT | + |
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Preference number: 2 (lower is better) Translates to: LVLPDLKKWLTATPPHGGTESLA*LGSTPS Trigger: AGATGGAGTGGATCCTAAGCATGCAAGACTCTCAGT...GCCACCATGAGGAGGTGTGGCTGTCAGCCATTTCTTCAGGTCAGGAAGGACTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CCA 90 bp | GATGAGGAAACAGGAACCAGAAACATTAAGCAGCCAGCCCAAGGAGGTCCAGCAATGGTGGAAGGCAAGTaGGGAACAGTAATCACGACA | + |
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Preference number: 2 (lower is better) Translates to: DEETGTRNIKQPAQGGPAMVEGK*GTVITT Trigger: TGTCGTGATTACTGTTCCCCACTTGCCTTCCACCAT...TGCTGGACCTCCTTGGGCTGGCTGCTTAATGTTTCTGGTTCCTGTTTCCTCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR GCA 90 bp | ACAAGGTCTTTTGTAGCCCAGGCTGTTCTGGGACTCACTATGTATTCCAGTCCAATAAAGACCCTACTGTaGACCAGCCCAGAAGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: TRSFVAQAVLGLTMYSSPIKTLL*TSPEGP Trigger: AGGACCTTCTGGGCTGGTGCACAGTAGGGTCTTTAT...TGGACTGGAATACATAGTGAGTCCCAGAACAGCCTGGGCTACAAAAGACCTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CAA 90 bp | ACACTTCCAAGCACTGACTTAAATACAAAAAGGAAGTGTCTGAAATaGAGCAGTTTGACAAGGCATGTCCATCAAAGTAGCTTCATGGGG | + |
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Preference number: 2 (lower is better) Translates to: TLPSTDLNTKRKCLK*SSLTRHVHQSSFMG Trigger: CCCCATGAAGCTACTTTGATGGACATGCCTTGTCAAACTGCTCAATTTCAGACACTTCCTTTTTGTATTTAAGTCAGTGCTTGGAAGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 72 bp | GAGTCACAACCAGACCCAGGACAGTGGAGAGCCGGGTaGCAGGCGAGCGGGGCCTTCGGAGGGCCTGGACAC | + |
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Preference number: 3 (lower is better) Translates to: ESQPDPGQWRAG*QASGAFGGPGH Trigger: GTGTCCAGGCCCTCCGAAGGCCCCGCTCGCCTGCCACCCGGCTCTCCACTGTCCTGGGTCTGGTTGTGACTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR GCA 72 bp | GCGGGGCCTTCGGAGGGCCTGGACACTCCCTGTCCCTaGGCCGAGTCCTCATTTCTCCTGGCAGACACCTGG | + |
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Preference number: 3 (lower is better) Translates to: AGPSEGLDTPCP*AESSFLLADTW Trigger: CCAGGTGTCTGCCAGGAGAAATGAGGACTCGGCGCAGGGACAGGGAGTGTCCAGGCCCTCCGAAGGCCCCGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR CCA 72 bp | CACAAAGGTGGCGAGTCACAACCAGACCCAGGACAGTaGAGAGCCGGGTGGCAGGCGAGCGGGGCCTTCGGA | + |
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Preference number: 3 (lower is better) Translates to: HKGGESQPDPGQ*RAGWQASGAFG Trigger: TCCGAAGGCCCCGCTCGCCTGCCACCCGGCTCTCCACTGTCCTGGGTCTGGTTGTGACTCGCCACCTTTGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR TCA 72 bp | GACACCTGGGTTGGGGCAGGAACCCTGTTGTTGGCATaGGCAGGCGGGCCTCTTCCTGGGGTCCCATCCCTG | + |
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Preference number: 3 (lower is better) Translates to: DTWVGAGTLLLA*AGGPLPGVPSL Trigger: CAGGGATGGGACCCCAGGAAGAGGCCCGCCTGCTCATGCCAACAACAGGGTTCCTGCCCCAACCCAGGTGTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR CCA 72 bp | TGGCAGACACCTGGGTTGGGGCAGGAACCCTGTTGTTaGCATGAGCAGGCGGGCCTCTTCCTGGGGTCCCAT | + |
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Preference number: 3 (lower is better) Translates to: WQTPGLGQEPCC*HEQAGLFLGSH Trigger: ATGGGACCCCAGGAAGAGGCCCGCCTGCTCATGCCAACAACAGGGTTCCTGCCCCAACCCAGGTGTCTGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR-3UTR CAA 90 bp | TGGACACTCCCTGTCCCTGCGCCGAGTCCTCATTTCTCCTGGCAGACACCTGGGGGTCCAGGCCAAGAGTaGCGGATGGTGGAAGGCAAG | + |
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Preference number: 3 (lower is better) Translates to: WTLPVPAPSPHFSWQTPGGPGQE*RMVEGK Trigger: CTTGCCTTCCACCATCCGCAACTCTTGGCCTGGACC...CCCAGGTGTCTGCCAGGAGAAATGAGGACTCGGCGCAGGGACAGGGAGTGTCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR CCA 72 bp | CGCCGAGTCCTCATTTCTCCTGGCAGACACCTGGGTTaGGGCAGGAACCCTGTTGTTGGCATGAGCAGGCGG | + |
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Preference number: 3 (lower is better) Translates to: RRVLISPGRHLG*GRNPVVGMSRR Trigger: CCGCCTGCTCATGCCAACAACAGGGTTCCTGCCCCAACCCAGGTGTCTGCCAGGAGAAATGAGGACTCGGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR TCA 72 bp | GGCACGCACCACCGCCGCCTTCCGTGGGAACCTTTTTaGCTGACCGTGTGCTTCTTTATCTGGCAGCGGAAC | + |
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Preference number: 3 (lower is better) Translates to: GTHHRRLPWEPF*LTVCFFIWQRN Trigger: GTTCCGCTGCCAGATAAAGAAGCACACGGTCAGTCAAAAAGGTTCCCACGGAAGGCGGCGGTGGTGCGTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR TCA 72 bp | CCCACACCACACACCCTTCCCCAGCACCTAAGCCAATaGGCCGCCATGCATCAGTCGACACTGGCAACGTGT | + |
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Preference number: 3 (lower is better) Translates to: PTPHTLPQHLSQ*AAMHQSTLATC Trigger: ACACGTTGCCAGTGTCGACTGATGCATGGCGGCTCATTGGCTTAGGTGCTGGGGAAGGGTGTGTGGTGTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 72 bp | CTCAGTTCTGTCAACCTGGAGAGGTTAACCCCTGCCTaGCCCTGGCATAGCCCTCCTCAGAGTGACTCCCTG | + |
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Preference number: 3 (lower is better) Translates to: LSSVNLERLTPA*PWHSPPQSDSL Trigger: CAGGGAGTCACTCTGAGGAGGGCTATGCCAGGGCCAGGCAGGGGTTAACCTCTCCAGGTTGACAGAACTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR-3UTR CAA 90 bp | ATGCTCCAGCCTCGGCTGTGGAACCACAGCACGCACCACATCCAGCTCTACACTCTAGGACCGGTCTGGTaGGGCACTGAGAGTCTTGCA | + |
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Preference number: 3 (lower is better) Translates to: MLQPRLWNHSTHHIQLYTLGPVW*GTESLA Trigger: TGCAAGACTCTCAGTGCCCAACCAGACCGGTCCTAG...AGTGTAGAGCTGGATGTGGTGCGTGCTGTGGTTCCACAGCCGAGGCTGGAGCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR TCA 72 bp | CGCACCACCGCCGCCTTCCGTGGGAACCTTTTTGACTaGCCGTGTGCTTCTTTATCTGGCAGCGGAACTGGA | + |
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Preference number: 3 (lower is better) Translates to: RTTAAFRGNLFD*PCASLSGSGTG Trigger: TCCAGTTCCGCTGCCAGATAAAGAAGCACACGGTCAGTCAAAAAGGTTCCCACGGAAGGCGGCGGTGGTGCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR GCA 72 bp | CACATCTCCACCTCACCAGTGCTGGGAGCACAAGCATaGCCAACATGCCTGGCTTTCTGTGTAGGTCCTGGG | + |
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Preference number: 3 (lower is better) Translates to: HISTSPVLGAQA*PTCLAFCVGPG Trigger: CCCAGGACCTACACAGAAAGCCAGGCATGTTGGGCATGCTTGTGCTCCCAGCACTGGTGAGGTGGAGATGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CAA 90 bp | TTAGTCCTTCCTGACCTGAAGAAATGGCTGACAGCCACACCTCCTCATGGTGGCGGTCCAGGCCAAGAGTaGCGGATGGTGGAAGGCAAG | + |
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Preference number: 3 (lower is better) Translates to: LVLPDLKKWLTATPPHGGGPGQE*RMVEGK Trigger: CTTGCCTTCCACCATCCGCAACTCTTGGCCTGGACC...GCCACCATGAGGAGGTGTGGCTGTCAGCCATTTCTTCAGGTCAGGAAGGACTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 72 bp | CTTAGGATCCACTCCATCTCAGCAAACTGGGACAATTaGTCCCCCACCCAGTTATGCCAGGCTACCCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: LRIHSISANWDN*SPTQLCQATQP Trigger: TGGCTGGGTAGCCTGGCATAACTGGGTGGGGGACCAATTGTCCCAGTTTGCTGAGATGGAGTGGATCCTAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 72 bp | AGTCTCAAACTCATGGCAATGCTCCAGCCTCGGCTGTaGAACCACAGCACGCACCACATCCAGCTCTACACT | + |
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Preference number: 3 (lower is better) Translates to: SLKLMAMLQPRL*NHSTHHIQLYT Trigger: AGTGTAGAGCTGGATGTGGTGCGTGCTGTGGTTCCACAGCCGAGGCTGGAGCATTGCCATGAGTTTGAGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR TCA 72 bp | ATCAGTACGTGTTCCAGGATACCCAGCTCGAGGGCCTaGGCAAGGACCTCTTCAGTAAGTCGGGAGAAGTTG | + |
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Preference number: 3 (lower is better) Translates to: ISTCSRIPSSRA*ARTSSVSREKL Trigger: CAACTTCTCCCGACTTACTGAAGAGGTCCTTGCTCAGGCCCTCGAGCTGGGTATCCTGGAACACGTACTGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR GCA 72 bp | CTAGGACCGGTCTGGTTGGGCACTGAGAGTCTTGCATaGTTAGGATCCACTCCATCTCAGCAAACTGGGACA | + |
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Preference number: 3 (lower is better) Translates to: LGPVWLGTESLA*LGSTPSQQTGT Trigger: TGTCCCAGTTTGCTGAGATGGAGTGGATCCTAAGCATGCAAGACTCTCAGTGCCCAACCAGACCGGTCCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CAA 90 bp | ACCTCCTCATGGTGGCTTTCCCGGGGATTCTGTGATTGTGATGTGAGTCTCTGGTCGAGGCTTGACAATTaGAGTTCTGTCCTCGGGACC | + |
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Preference number: 3 (lower is better) Translates to: TSSWWLSRGFCDCDVSLWSRLDN*SSVLGT Trigger: GGTCCCGAGGACAGAACTCAAATTGTCAAGCCTCGA...CCAGAGACTCACATCACAATCACAGAATCCCCGGGAAAGCCACCATGAGGAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 72 bp | TCTTGCATGCTTAGGATCCACTCCATCTCAGCAAACTaGGACAATTGGTCCCCCACCCAGTTATGCCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: SCMLRIHSISAN*DNWSPTQLCQA Trigger: AGCCTGGCATAACTGGGTGGGGGACCAATTGTCCCAGTTTGCTGAGATGGAGTGGATCCTAAGCATGCAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 72 bp | CCTGAAGAAATGGCTGACAGCCACACCTCCTCATGGTaGCTTTCCCGGGGATTCTGTGATTGTGATGTGAGT | + |
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Preference number: 3 (lower is better) Translates to: PEEMADSHTSSW*LSRGFCDCDVS Trigger: ACTCACATCACAATCACAGAATCCCCGGGAAAGCCACCATGAGGAGGTGTGGCTGTCAGCCATTTCTTCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 72 bp | GGACTCACTATGTATTCCAGTCCAGTCTCAAACTCATaGCAATGCTCCAGCCTCGGCTGTGGAACCACAGCA | + |
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Preference number: 3 (lower is better) Translates to: GLTMYSSPVSNS*QCSSLGCGTTA Trigger: TGCTGTGGTTCCACAGCCGAGGCTGGAGCATTGCCATGAGTTTGAGACTGGACTGGAATACATAGTGAGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 72 bp | CTTAAGGTCAACCGGCATCAAGCAATGCCGACAGAGTaGCCTGAGAATGAGCCCATTTGTCACTTCAGCTCT | + |
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Preference number: 3 (lower is better) Translates to: LKVNRHQAMPTE*PENEPICHFSS Trigger: AGAGCTGAAGTGACAAATGGGCTCATTCTCAGGCCACTCTGTCGGCATTGCTTGATGCCGGTTGACCTTAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| 3UTR CCA 72 bp | AGCATGCCCAACATGCCTGGCTTTCTGTGTAGGTCCTaGGGATCGAACTCGAGGCTTGACAATTTGAGTTCT | + |
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Preference number: 3 (lower is better) Translates to: SMPNMPGFLCRS*GSNSRLDNLSS Trigger: AGAACTCAAATTGTCAAGCCTCGAGTTCGATCCCCAGGACCTACACAGAAAGCCAGGCATGTTGGGCATGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 72 bp | CTGTTAGAAGGATCCTTCTTGAGAAAGTTGAGTGGGTaGCTCAGCGAATTGGGTGCCAGCTTGACTAGGACC | + |
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Preference number: 3 (lower is better) Translates to: LLEGSFLRKLSG*LSELGASLTRT Trigger: GGTCCTAGTCAAGCTGGCACCCAATTCGCTGAGCCACCCACTCAACTTTCTCAAGAAGGATCCTTCTAACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR TCA 72 bp | GGAGAAGTTGATCTAGGCTCAGTCTTTAGTCCTTCCTaGCCTGAAGAAATGGCTGACAGCCACACCTCCTCA | + |
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Preference number: 3 (lower is better) Translates to: GEVDLGSVFSPS*PEEMADSHTSS Trigger: TGAGGAGGTGTGGCTGTCAGCCATTTCTTCAGGTCAGGAAGGACTAAAGACTGAGCCTAGATCAACTTCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR GCA 72 bp | CTCAAGGCTGAGTCAGATGGCAGATCTGAAATCCCATaGCAAGGCTCCACACTTCCAAGCACTGACTTAAAT | + |
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Preference number: 3 (lower is better) Translates to: LKAESDGRSEIP*QGSTLPSTDLN Trigger: ATTTAAGTCAGTGCTTGGAAGTGTGGAGCCTTGGCATGGGATTTCAGATCTGCCATCTGACTCAGCCTTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 72 bp | CTTTCCCGGGGATTCTGTGATTGTGATGTGAGTCTCTaGTGTTTCTCCAAAGTAGAGCACATTGGAGCAGAG | + |
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Preference number: 3 (lower is better) Translates to: LSRGFCDCDVSL*CFSKVEHIGAE Trigger: CTCTGCTCCAATGTGCTCTACTTTGGAGAAACACCAGAGACTCACATCACAATCACAGAATCCCCGGGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR-3UTR CAA 90 bp | GAGGAAATTAAGGTGGAGAGAGATGAAGTGGCCTCAAGGCTGAGTCAGATGGCAAGGAAGTGTCTGAAATaGAGCAGTTTGACAAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: EEIKVERDEVASRLSQMARKCLK*SSLTRH Trigger: ATGCCTTGTCAAACTGCTCAATTTCAGACACTTCCT...TGCCATCTGACTCAGCCTTGAGGCCACTTCATCTCTCTCCACCTTAATTTCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CCA 72 bp | CACACTTCCAAAAATAGATTTCTAGCCAGGGAAGCATaGCCTTCCCAGTGCAGTATCTCAGTTCTGTCAACC | + |
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Preference number: 3 (lower is better) Translates to: HTSKNRFLAREA*PSQCSISVLST Trigger: GGTTGACAGAACTGAGATACTGCACTGGGAAGGCCATGCTTCCCTGGCTAGAAATCTATTTTTGGAAGTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| CDS-3UTR TCA 90 bp | GAGAGCCGGGTGGCAGGCGAGCGGGGCCTTCGGAGGGCCTGGACACTCCCTGTCGCCAGAGCCAGGGTCTaGAAGTACGCCGAGGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: ESRVAGERGLRRAWTLPVARARV*KYAEVH Trigger: GTGGACCTCGGCGTACTTTCAGACCCTGGCTCTGGC...GACAGGGAGTGTCCAGGCCCTCCGAAGGCCCCGCTCGCCTGCCACCCGGCTCTC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| CDS-3UTR CCA 90 bp | TCCATGTCCTTCCCAGAGGTTAAGTGGGGGAGGCAGGTGCAGCTGGGGATGAAGAGGTCCACCAGCGCCTaGTCCAAGTCCTCGGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SMSFPEVKWGRQVQLGMKRSTSA*SKSSGR Trigger: CCTGCCCGAGGACTTGGACCAGGCGCTGGTGGACCT...CTTCATCCCCAGCTGCACCTGCCTCCCCCACTTAACCTCTGGGAAGGACATGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038281.6 |
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| CDS-3UTR CCA 90 bp | TCCAGGCCAAGAGTTGCGGATGGTGGAAGGCAAGTGGGGAACAGTAATCACGACAGGTCCACCAGCGCCTaGTCCAAGTCCTCGGGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SRPRVADGGRQVGNSNHDRSTSA*SKSSGR Trigger: CCTGCCCGAGGACTTGGACCAGGCGCTGGTGGACCT...GTCGTGATTACTGTTCCCCACTTGCCTTCCACCATCCGCAACTCTTGGCCTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038281.6 ENSMUST00000184863.8 |
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| 3UTR CAA 72 bp | AGGCACGCACCACCGCCGCCTTCCGTGGGAACCTTTTaGACTGACCGTGTGCTTCTTTATCTGGCAGCGGAA | + |
|
Preference number: 4 (lower is better) Translates to: RHAPPPPSVGTF*TDRVLLYLAAE Trigger: TTCCGCTGCCAGATAAAGAAGCACACGGTCAGTCAAAAAGGTTCCCACGGAAGGCGGCGGTGGTGCGTGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CAA 72 bp | TCCTTCTTGAGAAAGTTGAGTGGGTGGCTCAGCGAATaGGGTGCCAGCTTGACTAGGACCGGTCTGGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: SFLRKLSGWLSE*GASLTRTGLVG Trigger: CCCAACCAGACCGGTCCTAGTCAAGCTGGCACCCAATTCGCTGAGCCACCCACTCAACTTTCTCAAGAAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CAA 72 bp | GAGATCCCTCTGTTAGAAGGATCCTTCTTGAGAAAGTaGAGTGGGTGGCTCAGCGAATTGGGTGCCAGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: EIPLLEGSFLRK*SGWLSELGASL Trigger: CAAGCTGGCACCCAATTCGCTGAGCCACCCACTCAACTTTCTCAAGAAGGATCCTTCTAACAGAGGGATCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| CDS-3UTR TCA 90 bp | TCATTCAAAACATACTCAGTAACCTTTATAAAGACCCTACTGTGCACCAGCCCAGCCAGAGCCAGGGTCTaGAAGTACGCCGAGGTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: SFKTYSVTFIKTLLCTSPARARV*KYAEVH Trigger: GTGGACCTCGGCGTACTTTCAGACCCTGGCTCTGGC...TGGGCTGGTGCACAGTAGGGTCTTTATAAAGGTTACTGAGTATGTTTTGAATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CAA 72 bp | TTAAATACAAAAAGGAAGTGTCTGAAATTGAGCAGTTaGACAAGGCATGTCCATCAAAGTAGCTTCATGGGG | + |
|
Preference number: 4 (lower is better) Translates to: LNTKRKCLKLSS*TRHVHQSSFMG Trigger: CCCCATGAAGCTACTTTGATGGACATGCCTTGTCAAACTGCTCAATTTCAGACACTTCCTTTTTGTATTTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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| 3UTR CAA 72 bp | AGCACTGACTTAAATACAAAAAGGAAGTGTCTGAAATaGAGCAGTTTGACAAGGCATGTCCATCAAAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: STDLNTKRKCLK*SSLTRHVHQSS Trigger: GCTACTTTGATGGACATGCCTTGTCAAACTGCTCAATTTCAGACACTTCCTTTTTGTATTTAAGTCAGTGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184863.8 |
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