Pregenerated sensors for DERPC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000117748Ensembl transcript IDs: ENSMUST00000169312.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACTAGACAGCAAGCGAGCCAATTCTCCAGCGGTGAGTGGGGAACTAGGACCTGCAAAAGAAGGTTCATTTaGACTCGAGCCCCAGCTATG | + |
|
Preference number: 2 (lower is better) Translates to: TRQQASQFSSGEWGTRTCKRRFI*TRAPAM Trigger: CATAGCTGGGGCTCGAGTTCAAATGAACCTTCTTTT...GCAGGTCCTAGTTCCCCACTCACCGCTGGAGAATTGGCTCGCTTGCTGTCTAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR TCA 90 bp | GGAGCCGCAGGCCCAGTCAAGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCCAGGTGCCCCGCAGCTaGCCTGGGGAAAGCAACTTG | + |
|
Preference number: 4 (lower is better) Translates to: GAAGPVKQKCGGSVAWVSQVPRS*PGESNL Trigger: CAAGTTGCTTTCCCCAGGTCAGCTGCGGGGCACCTG...GGACACCCACGCCACAGACCCACCACATTTCTGCTTGACTGGGCCTGCGGCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR GCA 90 bp | GGAGCCGCAGGCCCAGTCAAGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCCATTGGGTGGCCTaGGTTCATAACAGGCCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GAAGPVKQKCGGSVAWVSTHWVA*VHNRPS Trigger: GGAGGGCCTGTTATGAACGCAGGCCACCCAATGGGT...GGACACCCACGCCACAGACCCACCACATTTCTGCTTGACTGGGCCTGCGGCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | GGAGCCGCAGGCCCAGTCAAGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCCACCAGCTCTTGGGTTaGGCCCAAGACCTGGTCCTA | + |
|
Preference number: 4 (lower is better) Translates to: GAAGPVKQKCGGSVAWVSHQLLG*AQDLVL Trigger: TAGGACCAGGTCTTGGGCCCAACCCAAGAGCTGGTG...GGACACCCACGCCACAGACCCACCACATTTCTGCTTGACTGGGCCTGCGGCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR GCA 90 bp | GGAGCCGCAGGCCCAGTCAAGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCTTGGGAAAGAAGTCATaGCTGGGTCGCGAGCACCAG | + |
|
Preference number: 4 (lower is better) Translates to: GAAGPVKQKCGGSVAWVSLGKKS*LGREHQ Trigger: CTGGTGCTCGCGACCCAGGCATGACTTCTTTCCCAA...GGACACCCACGCCACAGACCCACCACATTTCTGCTTGACTGGGCCTGCGGCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | CAGCAAGCGAGCCAATTCTCCAGCGGTGAGTGGGGAACTAGGACCTGCAGGCCACAGCCGTCCTCGAGGTaGCAATGGAGCACGAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: QQASQFSSGEWGTRTCRPQPSSR*QWSTSP Trigger: TGGACTCGTGCTCCATTGCCACCTCGAGGACGGCTG...TGGCCTGCAGGTCCTAGTTCCCCACTCACCGCTGGAGAATTGGCTCGCTTGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | AGCCGCAGGCCCAGTCAAGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACGTTAGACATAGGCCCTaGGCCTGGAAGAGCCCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: SRRPSQAEMWWVCGVGVHVRHRP*AWKSPC Trigger: ACAGGGGCTCTTCCAGGCCCAGGGCCTATGTCTAAC...GTGGACACCCACGCCACAGACCCACCACATTTCTGCTTGACTGGGCCTGCGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | CAGCAAGCGAGCCAATTCTCCAGCGGTGAGTGGGGAACTAGGACCTGCAGGCCAAAGTCCGCCTGCCCTTaGGTTGGCCATAGGACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: QQASQFSSGEWGTRTCRPKSACP*VGHRTR Trigger: CCTGGTCCTATGGCCAACCCAAGGGCAGGCGGACTT...TGGCCTGCAGGTCCTAGTTCCCCACTCACCGCTGGAGAATTGGCTCGCTTGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | GACAGCAAGCGAGCCAATTCTCCAGCGGTGAGTGGGGAACTAGGACCTGCAGGCGCCCCGCAGCTGACCTaGGGAAAGCAACTTGACCTG | + |
|
Preference number: 4 (lower is better) Translates to: DSKRANSPAVSGELGPAGAPQLT*GKQLDL Trigger: CAGGTCAAGTTGCTTTCCCCAGGTCAGCTGCGGGGC...GCCTGCAGGTCCTAGTTCCCCACTCACCGCTGGAGAATTGGCTCGCTTGCTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR GCA 90 bp | AGCACAGAGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCAGGATCACCTCCCAGAAGTCCGCCTaGCCTTGGGTTGGCCATAGG | + |
|
Preference number: 4 (lower is better) Translates to: STEASGRPESLFLEARITSQKSA*PWVGHR Trigger: CCTATGGCCAACCCAAGGGCAGGCGGACTTCTGGGA...GGTGATCCTGGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCTCTGTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR TCA 90 bp | CAGCAAGCGAGCCAATTCTCCAGCGGTGAGTGGGGAACTAGGACCTGCAGGCCAAGGCCAGCAGACCTCTaGAAGGTGCCTGGATTTGAG | + |
|
Preference number: 4 (lower is better) Translates to: QQASQFSSGEWGTRTCRPRPADL*KVPGFE Trigger: CTCAAATCCAGGCACCTTTCAGAGGTCTGCTGGCCT...TGGCCTGCAGGTCCTAGTTCCCCACTCACCGCTGGAGAATTGGCTCGCTTGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR GCA 90 bp | CAGAGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCAGGATCACCCCATTCTAGGGTCAGGACTTaGTCCCAGAAGTCCGCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: QRLPEGQRAFSLRPGSPHSRVRT*SQKSAC Trigger: GCAGGCGGACTTCTGGGAGCAAGTCCTGACCCTAGA...ATGGGGTGATCCTGGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCTCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | AGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCTCCCATTCTGTGTTCAACCTGGTCCTGGTCCTaGTCCCAACAGGCCTCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: SRNVVGLWRGCPPPILCSTWSWS*SQQASW Trigger: CCAGGAGGCCTGTTGGGACCAGGACCAGGACCAGGT...TGAACACAGAATGGGAGGTGGACACCCACGCCACAGACCCACCACATTTCTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | ACTAGACAGCAAGCGAGCCAATTCTCCAGCGGTGAGTGGGGAACTAGGACCTGCGTTGGGACCCAGGCCTaGGCCTGGAAACATACCCGA | + |
|
Preference number: 4 (lower is better) Translates to: TRQQASQFSSGEWGTRTCVGTQA*AWKHTR Trigger: TCGGGTATGTTTCCAGGCCCAGGCCTGGGTCCCAAC...GCAGGTCCTAGTTCCCCACTCACCGCTGGAGAATTGGCTCGCTTGCTGTCTAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | AGCCGCAGGCCCAGTCAAGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACAGGAGCTGCATTCCTTaGAAATGGAGCCAGGTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: SRRPSQAEMWWVCGVGVHRSCIP*KWSQVS Trigger: GGAAACCTGGCTCCATTTCCAAGGAATGCAGCTCCT...GTGGACACCCACGCCACAGACCCACCACATTTCTGCTTGACTGGGCCTGCGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | ACTAGACAGCAAGCGAGCCAATTCTCCAGCGGTGAGTGGGGAACTAGGACCTGCTCCCAACAGGCCTCCTaGCCTTGGGAAGGAAACTGC | + |
|
Preference number: 4 (lower is better) Translates to: TRQQASQFSSGEWGTRTCSQQAS*PWEGNC Trigger: GCAGTTTCCTTCCCAAGGCCAGGAGGCCTGTTGGGA...GCAGGTCCTAGTTCCCCACTCACCGCTGGAGAATTGGCTCGCTTGCTGTCTAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | AGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCTCCCATTCTGTGTTCAACCCAGGCCTGGGCCTaGAAACATACCCGACCTAGG | + |
|
Preference number: 4 (lower is better) Translates to: SRNVVGLWRGCPPPILCSTQAWA*KHTRPR Trigger: CCTAGGTCGGGTATGTTTCCAGGCCCAGGCCTGGGT...TGAACACAGAATGGGAGGTGGACACCCACGCCACAGACCCACCACATTTCTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR TCA 90 bp | AGCCGCAGGCCCAGTCAAGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACGAGCCTGATGGATTCTaGAAAGGAGCTGCATTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: SRRPSQAEMWWVCGVGVHEPDGF*KGAAFL Trigger: AAGGAATGCAGCTCCTTTTCAGAATCCATCAGGCTC...GTGGACACCCACGCCACAGACCCACCACATTTCTGCTTGACTGGGCCTGCGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR TCA 90 bp | AGCCGCAGGCCCAGTCAAGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACAATGTGCCAGAAGACTaGGAGAAGGCATTTGGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: SRRPSQAEMWWVCGVGVHNVPED*EKAFGF Trigger: GAACCCAAATGCCTTCTCTCAGTCTTCTGGCACATT...GTGGACACCCACGCCACAGACCCACCACATTTCTGCTTGACTGGGCCTGCGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR TCA 90 bp | TGGGACAAAAGCACAGAGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCCTGGGGAAAGCAACTTaGCCTGGGCCTAATGGACCA | + |
|
Preference number: 4 (lower is better) Translates to: WDKSTEASGRPESLFLEALGKAT*PGPNGP Trigger: TGGTCCATTAGGCCCAGGTCAAGTTGCTTTCCCCAG...GGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCTCTGTGCTTTTGTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | AGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCTCCCATTCTGTGTTCACACCTGCCCTCATGTTaGGTCCACATCCAGGGACCA | + |
|
Preference number: 4 (lower is better) Translates to: SRNVVGLWRGCPPPILCSHLPSC*VHIQGP Trigger: TGGTCCCTGGATGTGGACCCAACATGAGGGCAGGTG...TGAACACAGAATGGGAGGTGGACACCCACGCCACAGACCCACCACATTTCTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | TGGGACAAAAGCACAGAGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCCTGCTGCCCTCAGGATaGGGGCAAGATCTAAGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: WDKSTEASGRPESLFLEALLPSG*GQDLSL Trigger: AAGGCTTAGATCTTGCCCCCATCCTGAGGGCAGCAG...GGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCTCTGTGCTTTTGTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR TCA 90 bp | AGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCTCCCATTCTGTGTTCAGAAAACTGCTTGATTTaGGCCCTGGAGGCCAGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: SRNVVGLWRGCPPPILCSENCLI*ALEASR Trigger: TCTGCTGGCCTCCAGGGCTCAAATCAAGCAGTTTTC...TGAACACAGAATGGGAGGTGGACACCCACGCCACAGACCCACCACATTTCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR TCA 90 bp | TGGGACAAAAGCACAGAGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCGCAAGATCTAAGCCTTaGGGTCCAGCCATTCTTAAG | + |
|
Preference number: 4 (lower is better) Translates to: WDKSTEASGRPESLFLEAARSKP*GPAILK Trigger: CTTAAGAATGGCTGGACCTCAAGGCTTAGATCTTGC...GGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCTCTGTGCTTTTGTCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CCA 90 bp | ATACAATGGAGGAAAACCAACCATCCTTCACATCAAGCTGAACACAGCACAGTGCACATGCTCGTGGGTTaGGACCCAGGCCTGGGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: IQWRKTNHPSHQAEHSTVHMLVG*DPGLGL Trigger: CAGGCCCAGGCCTGGGTCCCAACCCACGAGCATGTG...CACTGTGCTGTGTTCAGCTTGATGTGAAGGATGGTTGGTTTTCCTCCATTGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR TCA 90 bp | GAGGCCAGGATCACCCCATCTGCCATAGTCCATGGCTCACAAATAACATTTTGCTGGGTTCAGTCCTCCTaGTCCTGTCCCCCTTGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: EARITPSAIVHGSQITFCWVQSS*SCPPWK Trigger: TTTCCAAGGGGGACAGGATCAGGAGGACTGAACCCA...GCAAAATGTTATTTGTGAGCCATGGACTATGGCAGATGGGGTGATCCTGGCCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR GCA 90 bp | AGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCTCCCATTCTGTGTTCAATTCTGAAAAGGAGCTaGATTCCTTGGAAATGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: SRNVVGLWRGCPPPILCSILKRS*IPWKWS Trigger: GCTCCATTTCCAAGGAATGCAGCTCCTTTTCAGAAT...TGAACACAGAATGGGAGGTGGACACCCACGCCACAGACCCACCACATTTCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CAA 90 bp | GGAGCCGCAGGCCCAGTCAAGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCAGGCCACCTGCTCTGTaGTCCAGATTTGGGCCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: GAAGPVKQKCGGSVAWVSRPPAL*SRFGPG Trigger: CCCAGGCCCAAATCTGGACAACAGAGCAGGTGGCCT...GGACACCCACGCCACAGACCCACCACATTTCTGCTTGACTGGGCCTGCGGCTCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CAA 90 bp | AGCCGCAGGCCCAGTCAAGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCTCTGTTGTCCAGATTaGGGCCTGGGCCTAGGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: SRRPSQAEMWWVCGVGVHLCCPD*GLGLGH Trigger: GTGGCCTAGGCCCAGGCCCAAATCTGGACAACAGAG...GTGGACACCCACGCCACAGACCCACCACATTTCTGCTTGACTGGGCCTGCGGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CAA 90 bp | AGCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCTCCCATTCTGTGTTCACCGCCTGCCCTTGGGTaGGCCATAGGACCAGGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: SRNVVGLWRGCPPPILCSPPALG*AIGPGP Trigger: TGGACCTGGTCCTATGGCCAACCCAAGGGCAGGCGG...TGAACACAGAATGGGAGGTGGACACCCACGCCACAGACCCACCACATTTCTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CAA 90 bp | CAGAGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCAGGATCACCCCATACACCTGCCCTCATGTaGGGTCCACATCCAGGGACC | + |
|
Preference number: 5 (lower is better) Translates to: QRLPEGQRAFSLRPGSPHTPALM*GPHPGT Trigger: GGTCCCTGGATGTGGACCCAACATGAGGGCAGGTGT...ATGGGGTGATCCTGGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CAA 90 bp | CAGCAAGCGAGCCAATTCTCCAGCGGTGAGTGGGGAACTAGGACCTGCAGGCCAACTGAGAGAAGGCATTaGGGTTCAGTCCTCCTGATC | + |
|
Preference number: 5 (lower is better) Translates to: QQASQFSSGEWGTRTCRPTERRH*GSVLLI Trigger: GATCAGGAGGACTGAACCCAAATGCCTTCTCTCAGT...TGGCCTGCAGGTCCTAGTTCCCCACTCACCGCTGGAGAATTGGCTCGCTTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CAA 90 bp | AGCACAGAGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCAGGATCACCCTGATCCTGTCCCCCTaGGAAAGACTCCAGCATTTA | + |
|
Preference number: 5 (lower is better) Translates to: STEASGRPESLFLEARITLILSP*ERLQHL Trigger: TAAATGCTGGAGTCTTTCCAAGGGGGACAGGATCAG...GGTGATCCTGGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCTCTGTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CAA 90 bp | GAGGCCAGGATCACCCCATCTGCCATAGTCCATGGCTCACAAATAACATTTTGCCCAACTGGCCTAGGATaGGGAGGACCAGTCCCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: EARITPSAIVHGSQITFCPTGLG*GGPVPE Trigger: CTCTGGGACTGGTCCTCCCAATCCTAGGCCAGTTGG...GCAAAATGTTATTTGTGAGCCATGGACTATGGCAGATGGGGTGATCCTGGCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CAA 90 bp | ATACAATGGAGGAAAACCAACCATCCTTCACATCAAGCTGAACACAGCACAGTGCCACATGCTCGTGGGTaGGGACCCAGGCCTGGGCCT | + |
|
Preference number: 5 (lower is better) Translates to: IQWRKTNHPSHQAEHSTVPHARG*GPRPGP Trigger: AGGCCCAGGCCTGGGTCCCAACCCACGAGCATGTGG...CACTGTGCTGTGTTCAGCTTGATGTGAAGGATGGTTGGTTTTCCTCCATTGTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CAA 90 bp | ATACAATGGAGGAAAACCAACCATCCTTCACATCAAGCTGAACACAGCACAGTGATGGACCAGCAGACCTaGGGAAGGCAGCTGGACTTG | + |
|
Preference number: 5 (lower is better) Translates to: IQWRKTNHPSHQAEHSTVMDQQT*GRQLDL Trigger: CAAGTCCAGCTGCCTTCCCAAGGTCTGCTGGTCCAT...CACTGTGCTGTGTTCAGCTTGATGTGAAGGATGGTTGGTTTTCCTCCATTGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||
| CDS-3UTR CAA 90 bp | ATACAATGGAGGAAAACCAACCATCCTTCACATCAAGCTGAACACAGCACAGTGATCTCAGATTTGGACTaGGTCCAGGACCCAGGCCAA | + |
|
Preference number: 5 (lower is better) Translates to: IQWRKTNHPSHQAEHSTVISDLD*VQDPGQ Trigger: TTGGCCTGGGTCCTGGACCAAGTCCAAATCTGAGAT...CACTGTGCTGTGTTCAGCTTGATGTGAAGGATGGTTGGTTTTCCTCCATTGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169312.2 |
||