RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DEPTOR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022419

Ensembl transcript IDs: ENSMUST00000023056.8, ENSMUST00000096433.10, ENSMUST00000100660.11, ENSMUST00000226687.2

Found 293 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCACACAGATCCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTaGCATCCCTTGTCTATTCCCATCACCCACGGCACAGTGGTCTGT +
Preference number: 1 (lower is better)
Translates to: PHRSSESKEGQAGWW*HPLSIPITHGTVVC
Trigger: ACAGACCACTGTGCCGTGGGTGATGGGAATAGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGGATCTGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR TCA 90 bp GTCAGTGAATTCCTGATCCTCCTGCCTCCTCCACCCACCGAGTGCTaGAATGTGTGGCTGGTTCTACCTTGTCCCAGTGTTGCCACCCTA +
Preference number: 1 (lower is better)
Translates to: VSEFLILLPPPPTEC*NVWLVLPCPSVATL
Trigger: TAGGGTGGCAACACTGGGACAAGGTAGAACCAGCCACACATTTCAGCACTCGGTGGGTGGAGGAGGCAGGAGGATCAGGAATTCACTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 90 bp TGTTGTGGCTTCACCTTCCTGAACCAACCAGTCCAGGAATTCGGATaGCATGAAGGTCCGCTCATACTTCACCCCCTCCTCCTCTCTAGG +
Preference number: 1 (lower is better)
Translates to: CCGFTFLNQPVQEFG*HEGPLILHPLLLSR
Trigger: CCTAGAGAGGAGGAGGGGGTGAAGTATGAGCGGACCTTCATGGCATCCGAATTCCTGGACTGGTTGGTTCAGGAAGGTGAAGCCACAACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR CCA 90 bp CACACCGGAGCGAAGGCTAAACGCAAGGCCTCTAAAGAGGAAGTCTaGGCAGAAAGGCAAGGGGTTGGAGCACTGGAGAAATGCACTGTA +
Preference number: 1 (lower is better)
Translates to: HTGAKAKRKASKEEV*AERQGVGALEKCTV
Trigger: TACAGTGCATTTCTCCAGTGCTCCAACCCCTTGCCTTTCTGCCCAGACTTCCTCTTTAGAGGCCTTGCGTTTAGCCTTCGCTCCGGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR TCA 90 bp TGGCAAAGCTGCTCTGCCTCTTTCCTTGTTGTGGCTTCACCTTCCTaGACCAACCAGTCCAGGAATTCGGATGCCATGAAGGTCCGCTCA +
Preference number: 1 (lower is better)
Translates to: WQSCSASFLVVASPS*TNQSRNSDAMKVRS
Trigger: TGAGCGGACCTTCATGGCATCCGAATTCCTGGACTGGTTGGTTCAGGAAGGTGAAGCCACAACAAGGAAAGAGGCAGAGCAGCTTTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR GCA 90 bp ATGCTGGATGATCCCATGGTCCATAAGCCGGTGGCAAAGCTGCTCTaGCTCTTTCCTTGTTGTGGCTTCACCTTCCTGAACCAACCAGTC +
Preference number: 1 (lower is better)
Translates to: MLDDPMVHKPVAKLL*LFPCCGFTFLNQPV
Trigger: GACTGGTTGGTTCAGGAAGGTGAAGCCACAACAAGGAAAGAGGCAGAGCAGCTTTGCCACCGGCTTATGGACCATGGGATCATCCAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR TCA 90 bp TGTGGTCTCAGACTTGCTTTGTTACCAAGGATGTCAGTGAATTCCTaGTCCTCCTGCCTCCTCCACCCACCGAGTGCTGAAATGTGTGGC +
Preference number: 1 (lower is better)
Translates to: CGLRLALLPRMSVNS*SSCLLHPPSAEMCG
Trigger: GCCACACATTTCAGCACTCGGTGGGTGGAGGAGGCAGGAGGATCAGGAATTCACTGACATCCTTGGTAACAAAGCAAGTCTGAGACCACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 90 bp AGAAAAGATCTGCAATGTCCCAATTATCCATGTGCCTGGCAGCCTTaGCTCGCCACTGTTGTGTTGTTCTGGGATAGGGGACAAGCAGGG +
Preference number: 1 (lower is better)
Translates to: RKDLQCPNYPCAWQP*LATVVLFWDRGQAG
Trigger: CCCTGCTTGTCCCCTATCCCAGAACAACACAACAGTGGCGAGGCAAGGCTGCCAGGCACATGGATAATTGGGACATTGCAGATCTTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR GCA 90 bp GACGCTTGCCTTGAATTTGCAGCACTTCTGCCTTGCCCTCCTGAATaGTGGGATTATAGACTTGAGCCACCAAGCCCCTGCTGTGTTTTG +
Preference number: 1 (lower is better)
Translates to: DACLEFAALLPCPPE*WDYRLEPPSPCCVL
Trigger: CAAAACACAGCAGGGGCTTGGTGGCTCAAGTCTATAATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAGGCAAGCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR GCA 90 bp AGGGTCCCCTTTGAACACCTGATCTTTCTGCCTCCACTTCCTGGGTaGTGGGATTACAGGAACATGCTACGATATCTGGTTCAAAGGAAG +
Preference number: 1 (lower is better)
Translates to: RVPFEHLIFLPPLPG*WDYRNMLRYLVQRK
Trigger: CTTCCTTTGAACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACCCAGGAAGTGGAGGCAGAAAGATCAGGTGTTCAAAGGGGACCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CCA 90 bp TATGATCAGAGAAAAGATCTGCAATGTCCCAATTATCCATGTGCCTaGCAGCCTTGCCTCGCCACTGTTGTGTTGTTCTGGGATAGGGGA +
Preference number: 1 (lower is better)
Translates to: YDQRKDLQCPNYPCA*QPCLATVVLFWDRG
Trigger: TCCCCTATCCCAGAACAACACAACAGTGGCGAGGCAAGGCTGCCAGGCACATGGATAATTGGGACATTGCAGATCTTTTCTCTGATCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CCA 90 bp GTCCCCTTTGAACACCTGATCTTTCTGCCTCCACTTCCTGGGTGCTaGGATTACAGGAACATGCTACGATATCTGGTTCAAAGGAAGTCT +
Preference number: 1 (lower is better)
Translates to: VPFEHLIFLPPLPGC*DYRNMLRYLVQRKS
Trigger: AGACTTCCTTTGAACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACCCAGGAAGTGGAGGCAGAAAGATCAGGTGTTCAAAGGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CCA 90 bp TGCAGGTTGTCTCTAGATTGTCTGGAACTACACGACCTGGAACTGTaGCTTGGAGTGGTTTGCATGAGGCCATCTGTGTTAGACGGATTT +
Preference number: 1 (lower is better)
Translates to: CRLSLDCLELHDLEL*LGVVCMRPSVLDGF
Trigger: AAATCCGTCTAACACAGATGGCCTCATGCAAACCACTCCAAGCCACAGTTCCAGGTCGTGTAGTTCCAGACAATCTAGAGACAACCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 90 bp TCCTGCTATCTTGACAGGCAAGGAACACCAAAGACAGAAACTAGCTaGGATTCATCTTCTAAGGTGCTATCGCATCCGAATGTGGGGCTG +
Preference number: 1 (lower is better)
Translates to: SCYLDRQGTPKTETS*DSSSKVLSHPNVGL
Trigger: CAGCCCCACATTCGGATGCGATAGCACCTTAGAAGATGAATCTCAGCTAGTTTCTGTCTTTGGTGTTCCTTGCCTGTCAAGATAGCAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 90 bp ATATTTTATGTGGTCTCAGACTTGCTTTGTTACCAAGGATGTCAGTaGATTCCTGATCCTCCTGCCTCCTCCACCCACCGAGTGCTGAAA +
Preference number: 1 (lower is better)
Translates to: IFYVVSDLLCYQGCQ*IPDPPASSTHRVLK
Trigger: TTTCAGCACTCGGTGGGTGGAGGAGGCAGGAGGATCAGGAATTCACTGACATCCTTGGTAACAAAGCAAGTCTGAGACCACATAAAATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 90 bp AACCTGTTTCAGCTGAATGACTTTATCCCACAGAAGAATCTACTGTaGCAGGGATGGAAGGCAAGAGACTCAAGGAATTCGGCCAAGCTG +
Preference number: 1 (lower is better)
Translates to: NLFQLNDFIPQKNLL*QGWKARDSRNSAKL
Trigger: CAGCTTGGCCGAATTCCTTGAGTCTCTTGCCTTCCATCCCTGTCACAGTAGATTCTTCTGTGGGATAAAGTCATTCAGCTGAAACAGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 90 bp TGTGACAGGGATGGAAGGCAAGAGACTCAAGGAATTCGGCCAAGCTaGACAAGTCTGGGTATAGTCCAAGATTGTTTTATGCCTCATTCA +
Preference number: 1 (lower is better)
Translates to: CDRDGRQETQGIRPS*TSLGIVQDCFMPHS
Trigger: TGAATGAGGCATAAAACAATCTTGGACTATACCCAGACTTGTGCAGCTTGGCCGAATTCCTTGAGTCTCTTGCCTTCCATCCCTGTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 90 bp ATAGCCAGGATAGCCTCAAATTCCATTCTCCAGCACGAATCTTTGTaGTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTCAGAAGGCA +
Preference number: 1 (lower is better)
Translates to: IARIASNSILQHESL*CEPPCPVVIKLQKA
Trigger: TGCCTTCTGAAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAGAATGGAATTTGAGGCTATCCTGGCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 90 bp CCAGGTCCCTGCAGTTCTCTCATCAGGTCCTACCACTTCTTCGTTTaGATCTTTGAGGCAATATTTTATGTGGTCTCAGACTTGCTTTGT +
Preference number: 1 (lower is better)
Translates to: PGPCSSLIRSYHFFV*IFEAIFYVVSDLLC
Trigger: ACAAAGCAAGTCTGAGACCACATAAAATATTGCCTCAAAGATGCAAACGAAGAAGTGGTAGGACCTGATGAGAGAACTGCAGGGACCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 90 bp TGTTGTGAGCCATTATGTAATTTTAGGAAGCAAACTCAAGTCCTCTaGAAGAGCAATCTAGGCTCTTTGCCACTGTGCTCTCTCTCCAGC +
Preference number: 1 (lower is better)
Translates to: CCEPLCNFRKQTQVL*KSNLGSLPLCSLSS
Trigger: GCTGGAGAGAGAGCACAGTGGCAAAGAGCCTAGATTGCTCTTCCAGAGGACTTGAGTTTGCTTCCTAAAATTACATAATGGCTCACAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 90 bp TGGATGTTTTGCATTATATCTATATTTGTGTACCATGTGCGCCCCTaGTACCCAAGAAGATCAGAAGAGGGTGTCAGATCTTGTGCCACT +
Preference number: 1 (lower is better)
Translates to: WMFCIISIFVYHVRP*YPRRSEEGVRSCAT
Trigger: AGTGGCACAAGATCTGACACCCTCTTCTGATCTTCTTGGGTACCAGGGGCGCACATGGTACACAAATATAGATATAATGCAAAACATCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 90 bp TTATTAACACATGGGACTTTGGGAGACAGACATTCAAGAATCAAATaGCAGCAGCTTCCAAGAACAAAAGGCCTCCGACAACTAGCTCAC +
Preference number: 1 (lower is better)
Translates to: LLTHGTLGDRHSRIK*QQLPRTKGLRQLAH
Trigger: GTGAGCTAGTTGTCGGAGGCCTTTTGTTCTTGGAAGCTGCTGTCATTTGATTCTTGAATGTCTGTCTCCCAAAGTCCCATGTGTTAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 90 bp CGGCAAACTTCATTTTGGCATACAGCTCATTTGTCCTTTTGGTTCTaGAGTGAAGAAATATGCATCATACCTGAAGTTCAGGTGGCAGGA +
Preference number: 1 (lower is better)
Translates to: RQTSFWHTAHLSFWF*SEEICIIPEVQVAG
Trigger: TCCTGCCACCTGAACTTCAGGTATGATGCATATTTCTTCACTGCAGAACCAAAAGGACAAATGAGCTGTATGCCAAAATGAAGTTTGCCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 90 bp ATCAATGAGATGATTAAACTGTGTTCTACCCAGCCCAAGCAGCACTaGCATTTTAGGACCCATGGACTTGGAAGGTTTTGTTATAAACCA +
Preference number: 1 (lower is better)
Translates to: INEMIKLCSTQPKQH*HFRTHGLGRFCYKP
Trigger: TGGTTTATAACAAAACCTTCCAAGTCCATGGGTCCTAAAATGTCAGTGCTGCTTGGGCTGGGTAGAACACAGTTTAATCATCTCATTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 90 bp TCACATTCCCTTCCATTTCTCAATGAATTTCCTTATTATGTCTTTTaGGTATCACATGTAGCCCAGGCTAGCCTTAGATGTGGTGATCCT +
Preference number: 1 (lower is better)
Translates to: SHSLPFLNEFPYYVF*VSHVAQASLRCGDP
Trigger: AGGATCACCACATCTAAGGCTAGCCTGGGCTACATGTGATACCCAAAAGACATAATAAGGAAATTCATTGAGAAATGGAAGGGAATGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 90 bp TATGTATATGGATGTTTTGCATTATATCTATATTTGTGTACCATGTaGGCCCCTGGTACCCAAGAAGATCAGAAGAGGGTGTCAGATCTT +
Preference number: 1 (lower is better)
Translates to: YVYGCFALYLYLCTM*APGTQEDQKRVSDL
Trigger: AAGATCTGACACCCTCTTCTGATCTTCTTGGGTACCAGGGGCGCACATGGTACACAAATATAGATATAATGCAAAACATCCATATACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 90 bp TTTTCCATGTTGCTAATTTGGTTTCACAACAACTTCCCGAAAACATaGAGAACAATGATTGAGAACTCTAAACTGGGCTTTGGTGCGTGT +
Preference number: 1 (lower is better)
Translates to: FSMLLIWFHNNFPKT*RTMIENSKLGFGAC
Trigger: ACACGCACCAAAGCCCAGTTTAGAGTTCTCAATCATTGTTCTTCATGTTTTCGGGAAGTTGTTGTGAAACCAAATTAGCAACATGGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR TCA 90 bp ATACAGAATAAGACCTTGGTATTTGAAACAAATAACAATAGCAGATaGTCCTCCCCCTTCTCTTCAAAGATCCCTGATGCCACTTTTGAG +
Preference number: 1 (lower is better)
Translates to: IQNKTLVFETNNNSR*SSPFSSKIPDATFE
Trigger: CTCAAAAGTGGCATCAGGGATCTTTGAAGAGAAGGGGGAGGATCATCTGCTATTGTTATTTGTTTCAAATACCAAGGTCTTATTCTGTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 90 bp ACTAGAAGTTCCTGGCCAACTTGGAATACATACAGAATAAGACCTTaGTATTTGAAACAAATAACAATAGCAGATGATCCTCCCCCTTCT +
Preference number: 1 (lower is better)
Translates to: TRSSWPTWNTYRIRP*YLKQITIADDPPPS
Trigger: AGAAGGGGGAGGATCATCTGCTATTGTTATTTGTTTCAAATACCAAGGTCTTATTCTGTATGTATTCCAAGTTGGCCAGGAACTTCTAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 90 bp GGAAGAATATGTCCAAGATGCGCAGTTAAATGTTATCTCAGGCAGTaGATAAGTAAATACCGTTTCCTCTTTGAAGATCACAGACACAAA +
Preference number: 1 (lower is better)
Translates to: GRICPRCAVKCYLRQ*ISKYRFLFEDHRHK
Trigger: TTTGTGTCTGTGATCTTCAAAGAGGAAACGGTATTTACTTATTCACTGCCTGAGATAACATTTAACTGCGCATCTTGGACATATTCTTCC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 90 bp TTTGGTTCTGCAGTGAAGAAATATGCATCATACCTGAAGTTCAGGTaGCAGGAAATCATTATTAATGTCAATCATCAATTTCAACCAGTC +
Preference number: 1 (lower is better)
Translates to: FGSAVKKYASYLKFR*QEIIINVNHQFQPV
Trigger: GACTGGTTGAAATTGATGATTGACATTAATAATGATTTCCTGCCACCTGAACTTCAGGTATGATGCATATTTCTTCACTGCAGAACCAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 90 bp GAATTTAAGACTAGCCTGTGCTATACTAGAAGTTCCTGGCCAACTTaGAATACATACAGAATAAGACCTTGGTATTTGAAACAAATAACA +
Preference number: 1 (lower is better)
Translates to: EFKTSLCYTRSSWPT*NTYRIRPWYLKQIT
Trigger: TGTTATTTGTTTCAAATACCAAGGTCTTATTCTGTATGTATTCCAAGTTGGCCAGGAACTTCTAGTATAGCACAGGCTAGTCTTAAATTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp AGATCCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTGCAGCACTTCTGCCTTaGCCTCCTGAATGCTGGGAT +
Preference number: 2 (lower is better)
Translates to: RSSESKEGQAGWWWHPLSAALLP*PPECWD
Trigger: ATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGC...AGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGGATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp TCCTGCCTCCTCCACCCACCGAGTGCTGAAATGTGTGGCTGGTTCTACCTTGTCGCAGCACTTCTGCCTTaGCCTCCTGAATGCTGGGAT +
Preference number: 2 (lower is better)
Translates to: SCLLHPPSAEMCGWFYLVAALLP*PPECWD
Trigger: ATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGC...GACAAGGTAGAACCAGCCACACATTTCAGCACTCGGTGGGTGGAGGAGGCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp GAAGGGACTGTCATGCGTCTCCTGAGAGGACGGGGACGTCTCATTGAGCAGCTCAGCCGGTGGCAAAGCTaGTCTGCCTCTTTCCTTGTT +
Preference number: 2 (lower is better)
Translates to: EGTVMRLLRGRGRLIEQLSRWQS*SASFLV
Trigger: AACAAGGAAAGAGGCAGAGCAGCTTTGCCACCGGCT...GAGCTGCTCAATGAGACGTCCCCGTCCTCTCAGGAGACGCATGACAGTCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR-3UTR GCA 90 bp CTGCTTCCTCAGACAGAAGGGACTGTCATGCGTCTCCTGAGAGGACGGGGACGTGTCCAGGAATTCGGATaGCATGAAGGTCCGCTCATA +
Preference number: 2 (lower is better)
Translates to: LLPQTEGTVMRLLRGRGRVQEFG*HEGPLI
Trigger: TATGAGCGGACCTTCATGGCATCCGAATTCCTGGAC...ACGTCCCCGTCCTCTCAGGAGACGCATGACAGTCCCTTCTGTCTGAGGAAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR CAA 90 bp TCCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTaGTCTATTCCCATCACCCACGGCACAGTGGTCTGTTTTATCTTT +
Preference number: 2 (lower is better)
Translates to: SSESKEGQAGWWWHP*SIPITHGTVVCFIF
Trigger: AAAGATAAAACAGACCACTGTGCCGTGGGTGATGGGAATAGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR TCA 90 bp TCCTGCCTCCTCCACCCACCGAGTGCTGAAATGTGTGGCTGGTTCTACCTTGTCGCAGGTGCTCCAACTTaGAGACCACTGAATTTGCTC +
Preference number: 2 (lower is better)
Translates to: SCLLHPPSAEMCGWFYLVAGAPT*RPLNLL
Trigger: GAGCAAATTCAGTGGTCTTCAAGTTGGAGCACCTGC...GACAAGGTAGAACCAGCCACACATTTCAGCACTCGGTGGGTGGAGGAGGCAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp CCAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCTGTGCCTGGCAGCCTTaGCTCGCCACTGTTGTGTTG +
Preference number: 2 (lower is better)
Translates to: PGSHYYQNSSDHPPASASCAWQP*LATVVL
Trigger: CAACACAACAGTGGCGAGGCAAGGCTGCCAGGCACA...GGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp GACGTCTCATTGAGCAGCTCCATCAGCCTCCGCCTCCGACGGAAGTTCATTCTGCTGTCCACAAACGGGTaGTTGTTAGACACATGCTGG +
Preference number: 2 (lower is better)
Translates to: DVSLSSSISLRLRRKFILLSTNG*LLDTCW
Trigger: CCAGCATGTGTCTAACAAGCACCCGTTTGTGGACAG...CAGAATGAACTTCCGTCGGAGGCGGAGGCTGATGGAGCTGCTCAATGAGACGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR-3UTR CCA 90 bp CCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTATTCGAAAGATCCCGAGTGTaGTTTTTGAGACAGGCACTC +
Preference number: 2 (lower is better)
Translates to: PVRAKRGRRVGGGIPCLFERSRV*FLRQAL
Trigger: GAGTGCCTGTCTCAAAAACCACACTCGGGATCTTTC...GAATAGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp CCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTATTCGTATGTGCACTTGTGTaGAAAGATCCCGAGTGTGGT +
Preference number: 2 (lower is better)
Translates to: PVRAKRGRRVGGGIPCLFVCALV*KDPECG
Trigger: ACCACACTCGGGATCTTTCCACACAAGTGCACATAC...GAATAGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp CCCAGATTGCAGGTGCTGGTTCCTTATTCTTACCACACAAGCACAGTAGGCATGTGTGCCTGGCAGCCTTaGCTCGCCACTGTTGTGTTG +
Preference number: 2 (lower is better)
Translates to: PRLQVLVPYSYHTSTVGMCAWQP*LATVVL
Trigger: CAACACAACAGTGGCGAGGCAAGGCTGCCAGGCACA...CATGCCTACTGTGCTTGTGTGGTAAGAATAAGGAACCAGCACCTGCAATCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp AACTCCCCAGGTCCCTGCAGTTCTCTCATCAGGTCCTACCACTTCTTCGTTTGCACCTCCTGGCACCTTTaGAGCAGTGGTTGGTCACAT +
Preference number: 2 (lower is better)
Translates to: NSPGPCSSLIRSYHFFVCTSWHL*SSGWSH
Trigger: ATGTGACCAACCACTGCTCCAAAGGTGCCAGGAGGT...GCAAACGAAGAAGTGGTAGGACCTGATGAGAGAACTGCAGGGACCTGGGGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp ATTGAGCAGCTCCATCAGCCTCCGCCTCCGACGGAAGTTCATTCTGAACTGGTATGCTGGATGATCCCATaGTCCATAAGCCGGTGGCAA +
Preference number: 2 (lower is better)
Translates to: IEQLHQPPPPTEVHSELVCWMIP*SISRWQ
Trigger: TTGCCACCGGCTTATGGACCATGGGATCATCCAGCA...TACCAGTTCAGAATGAACTTCCGTCGGAGGCGGAGGCTGATGGAGCTGCTCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR-3UTR TCA 90 bp TTGCTGTCCACAAACGGGTGCTTGTTAGACACATGCTGGATGATCCCATGGTCCGTGGCTTCACCTTCCTaGACCAACCAGTCCAGGAAT +
Preference number: 2 (lower is better)
Translates to: LLSTNGCLLDTCWMIPWSVASPS*TNQSRN
Trigger: ATTCCTGGACTGGTTGGTTCAGGAAGGTGAAGCCAC...GGACCATGGGATCATCCAGCATGTGTCTAACAAGCACCCGTTTGTGGACAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR-3UTR GCA 90 bp GTTGCTGTCCACAAACGGGTGCTTGTTAGACACATGCTGGATGATCCCATGGTCGTGGCAAAGCTGCTCTaGCTCTTTCCTTGTTGTGGC +
Preference number: 2 (lower is better)
Translates to: VAVHKRVLVRHMLDDPMVVAKLL*LFPCCG
Trigger: GCCACAACAAGGAAAGAGGCAGAGCAGCTTTGCCAC...GACCATGGGATCATCCAGCATGTGTCTAACAAGCACCCGTTTGTGGACAGCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR-3UTR CCA 90 bp TTGCCAAGTGCAATCTTGCCAGAGACTCTGAGTCTTACACAGGTAAGGACAGACCAGGCGGGTTGGTGGTaGCATCCCTTGTCTATTCCC +
Preference number: 2 (lower is better)
Translates to: LPSAILPETLSLTQVRTDQAGWW*HPLSIP
Trigger: GGGAATAGACAAGGGATGCCACCACCAACCCGCCTG...GTCTGTCCTTACCTGTGTAAGACTCAGAGTCTCTGGCAAGATTGCACTTGGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp AGAAGAATCTACTGTGACAGGGATGGAAGGCAAGAGACTCAAGGAATTCGGCCACAGGCGGGTTGGTGGTaGCATCCCTTGTCTATTCCC +
Preference number: 2 (lower is better)
Translates to: RRIYCDRDGRQETQGIRPQAGWW*HPLSIP
Trigger: GGGAATAGACAAGGGATGCCACCACCAACCCGCCTG...TGGCCGAATTCCTTGAGTCTCTTGCCTTCCATCCCTGTCACAGTAGATTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp CTCATTTGGCACTCTGAGGAATATCCTCTACATACCAATACCCCAATGCACTTCGAGGGGCAGGCGGGTTaGTGGTGGCATCCCTTGTCT +
Preference number: 2 (lower is better)
Translates to: LIWHSEEYPLHTNTPMHFEGQAG*WWHPLS
Trigger: AGACAAGGGATGCCACCACCAACCCGCCTGCCCCTC...GAAGTGCATTGGGGTATTGGTATGTAGAGGATATTCCTCAGAGTGCCAAATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR TCA 90 bp AACTCCCCAGGTCCCTGCAGTTCTCTCATCAGGTCCTACCACTTCTTCGTTTGCTGGCATCACATCCCATaGCACGAGAAGGCTTGTAAA +
Preference number: 2 (lower is better)
Translates to: NSPGPCSSLIRSYHFFVCWHHIP*HEKACK
Trigger: TTTACAAGCCTTCTCGTGTCATGGGATGTGATGCCA...GCAAACGAAGAAGTGGTAGGACCTGATGAGAGAACTGCAGGGACCTGGGGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR TCA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTGCCAACTTGGTCTACTaGGTGAGTTCCAGGACAGCC +
Preference number: 2 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLANLVY*VSSRTA
Trigger: GGCTGTCCTGGAACTCACTCAGTAGACCAAGTTGGC...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR TCA 90 bp TTGCCAAGTGCAATCTTGCCAGAGACTCTGAGTCTTACACAGGTAAGGACAGACCTACCAGAACTCAAGTaGTCATCCTCCTGCCTCAGC +
Preference number: 2 (lower is better)
Translates to: LPSAILPETLSLTQVRTDLPELK*SSSCLS
Trigger: GCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAG...GTCTGTCCTTACCTGTGTAAGACTCAGAGTCTCTGGCAAGATTGCACTTGGCAA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR TCA 90 bp CTGTCCACAAACGGGTGCTTGTTAGACACATGCTGGATGATCCCATGGTCCATAGGAATTCGGATGCCATaGAGGTCCGCTCATACTTCA +
Preference number: 2 (lower is better)
Translates to: LSTNGCLLDTCWMIPWSIGIRMP*RSAHTS
Trigger: TGAAGTATGAGCGGACCTTCATGGCATCCGAATTCC...TATGGACCATGGGATCATCCAGCATGTGTCTAACAAGCACCCGTTTGTGGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR-3UTR GCA 90 bp GGCACTCTGAGGAATATCCTCTACATACCAATACCCCAATGCACTTCCTTGTCTTCCCAATTATCCATGTaGCTGGCAGCCTTGCCTCGC +
Preference number: 2 (lower is better)
Translates to: GTLRNILYIPIPQCTSLSSQLSM*LAALPR
Trigger: GCGAGGCAAGGCTGCCAGGCACATGGATAATTGGGA...AGACAAGGAAGTGCATTGGGGTATTGGTATGTAGAGGATATTCCTCAGAGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTCCTCCACTTCCTGGGTaGTGGGATTACAGGAACATG +
Preference number: 2 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLPPLPG*WDYRNM
Trigger: CATGTTCCTGTAATCCCAGCACCCAGGAAGTGGAGG...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp CCACGGCACAGTGGTCTGTTTTATCTTTCACCTCAAGATGCAACTGAAACAGGCAATTATCCATGTGCCTaGCAGCCTTGCCTCGCCACT +
Preference number: 2 (lower is better)
Translates to: PRHSGLFYLSPQDATETGNYPCA*QPCLAT
Trigger: AGTGGCGAGGCAAGGCTGCCAGGCACATGGATAATT...GCCTGTTTCAGTTGCATCTTGAGGTGAAAGATAAAACAGACCACTGTGCCGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp CCACTAAAGCCAAGTCCCTTAAATGTGGACACTTGCCAAGTGCAATCTTGCCAGAATTATCCATGTGCCTaGCAGCCTTGCCTCGCCACT +
Preference number: 2 (lower is better)
Translates to: PLKPSPLNVDTCQVQSCQNYPCA*QPCLAT
Trigger: AGTGGCGAGGCAAGGCTGCCAGGCACATGGATAATT...CTGGCAAGATTGCACTTGGCAAGTGTCCACATTTAAGGGACTTGGCTTTAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR TCA 90 bp GGCACTCTGAGGAATATCCTCTACATACCAATACCCCAATGCACTTCCTTGTCTACACAGGGTCCCCTTTaGACACCTGATCTTTCTGCC +
Preference number: 2 (lower is better)
Translates to: GTLRNILYIPIPQCTSLSTQGPL*TPDLSA
Trigger: GGCAGAAAGATCAGGTGTTCAAAGGGGACCCTGTGT...AGACAAGGAAGTGCATTGGGGTATTGGTATGTAGAGGATATTCCTCAGAGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CAA 90 bp GTTCTACCCAGCCCAAGCAGCACTGACATTTTAGGACCCATGGACTaGGAAGGTTTTGTTATAAACCAGCCTTCAGGTACATCTCACTCC +
Preference number: 2 (lower is better)
Translates to: VLPSPSSTDILGPMD*EGFVINQPSGTSHS
Trigger: GGAGTGAGATGTACCTGAAGGCTGGTTTATAACAAAACCTTCCAAGTCCATGGGTCCTAAAATGTCAGTGCTGCTTGGGCTGGGTAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp TTGCCAAGTGCAATCTTGCCAGAGACTCTGAGTCTTACACAGGTAAGGACAGACAATTTGCAGCACTTCTaGCTTGCCCTCCTGAATGCT +
Preference number: 2 (lower is better)
Translates to: LPSAILPETLSLTQVRTDNLQHF*LALLNA
Trigger: AGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATT...GTCTGTCCTTACCTGTGTAAGACTCAGAGTCTCTGGCAAGATTGCACTTGGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp GATGGAGCTTGTAGTGGCAAGCAGATCCCTAAATTGGCATCACATCCCATGACAGGGGTTTCACTATGTTaGCCAGGCTCACATTACTAC +
Preference number: 2 (lower is better)
Translates to: DGACSGKQIPKLASHPMTGVSLC*PGSHYY
Trigger: GTAGTAATGTGAGCCTGGGCAACATAGTGAAACCCC...TGTCATGGGATGTGATGCCAATTTAGGGATCTGCTTGCCACTACAAGCTCCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp CAAGATGGAGCTTGTAGTGGCAAGCAGATCCCTAAATTGGCATCACATCCCATGGGGGTTTCACTATGTTaGCCAGGCTCACATTACTAC +
Preference number: 2 (lower is better)
Translates to: QDGACSGKQIPKLASHPMGVSLC*PGSHYY
Trigger: GTAGTAATGTGAGCCTGGGCAACATAGTGAAACCCC...CATGGGATGTGATGCCAATTTAGGGATCTGCTTGCCACTACAAGCTCCATCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp CTCATTTGGCACTCTGAGGAATATCCTCTACATACCAATACCCCAATGCACTTCCCTCCACTTCCTGGGTaGTGGGATTACAGGAACATG +
Preference number: 2 (lower is better)
Translates to: LIWHSEEYPLHTNTPMHFPPLPG*WDYRNM
Trigger: CATGTTCCTGTAATCCCAGCACCCAGGAAGTGGAGG...GAAGTGCATTGGGGTATTGGTATGTAGAGGATATTCCTCAGAGTGCCAAATGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp AGAAGAATCTACTGTGACAGGGATGGAAGGCAAGAGACTCAAGGAATTCGGCCAGAAAGATCCCGAGTGTaGTTTTTGAGACAGGCACTC +
Preference number: 2 (lower is better)
Translates to: RRIYCDRDGRQETQGIRPERSRV*FLRQAL
Trigger: GAGTGCCTGTCTCAAAAACCACACTCGGGATCTTTC...TGGCCGAATTCCTTGAGTCTCTTGCCTTCCATCCCTGTCACAGTAGATTCTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp AGAAGAATCTACTGTGACAGGGATGGAAGGCAAGAGACTCAAGGAATTCGGCCATCACCCACGGCACAGTaGTCTGTTTTATCTTTCACC +
Preference number: 2 (lower is better)
Translates to: RRIYCDRDGRQETQGIRPSPTAQ*SVLSFT
Trigger: GGTGAAAGATAAAACAGACCACTGTGCCGTGGGTGA...TGGCCGAATTCCTTGAGTCTCTTGCCTTCCATCCCTGTCACAGTAGATTCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CAA 90 bp GTGTGTGGTATGTGCACTTGTGTGGAAAGATCCCGAGTGTGGTTTTaGAGACAGGCACTCACACTGTTAGTAGACGCTTGCCTTGAATTT +
Preference number: 2 (lower is better)
Translates to: VCGMCTCVERSRVWF*RQALTLLVDACLEF
Trigger: AAATTCAAGGCAAGCGTCTACTAACAGTGTGAGTGCCTGTCTCAAAAACCACACTCGGGATCTTTCCACACAAGTGCACATACCACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR TCA 90 bp GGCACTCTGAGGAATATCCTCTACATACCAATACCCCAATGCACTTCCTTGTCTTGGCATCACATCCCATaGCACGAGAAGGCTTGTAAA +
Preference number: 2 (lower is better)
Translates to: GTLRNILYIPIPQCTSLSWHHIP*HEKACK
Trigger: TTTACAAGCCTTCTCGTGTCATGGGATGTGATGCCA...AGACAAGGAAGTGCATTGGGGTATTGGTATGTAGAGGATATTCCTCAGAGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTCTAAGTAGCCCAGATTaGAGGTGCTGGTTCCTTATT +
Preference number: 2 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLLSSPD*RCWFLI
Trigger: AATAAGGAACCAGCACCTGCAATCTGGGCTACTTAG...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp AACTCCCCAGGTCCCTGCAGTTCTCTCATCAGGTCCTACCACTTCTTCGTTTGCACATGCTACGATATCTaGTTCAAAGGAAGTCTTTTC +
Preference number: 2 (lower is better)
Translates to: NSPGPCSSLIRSYHFFVCTCYDI*FKGSLF
Trigger: GAAAAGACTTCCTTTGAACCAGATATCGTAGCATGT...GCAAACGAAGAAGTGGTAGGACCTGATGAGAGAACTGCAGGGACCTGGGGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp CAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCTTCCATGTTGCTAATTTaGTTTCACAACAACTTCCCG +
Preference number: 2 (lower is better)
Translates to: QAHITTRTQVIILLPQHPSMLLI*FHNNFP
Trigger: CGGGAAGTTGTTGTGAAACCAAATTAGCAACATGGA...AGGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR TCA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTAAAAGCTACTGGAGTTaGCTTATAAGGCAAAACCAC +
Preference number: 2 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLKSYWS*LIRQNH
Trigger: GTGGTTTTGCCTTATAAGTCAACTCCAGTAGCTTTT...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp CCAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCATCAGAGAAAAGATCTaGAATGTCCCAATTATCCAT +
Preference number: 2 (lower is better)
Translates to: PGSHYYQNSSDHPPASASIREKI*NVPIIH
Trigger: ATGGATAATTGGGACATTGCAGATCTTTTCTCTGAT...GGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR TCA 90 bp TTTGGTTCTGCAGTGAAGAAATATGCATCATACCTGAAGTTCAGGTGGCAGGAAAAATGTTCTCGCTGGTaGGATGGCTCAGTGGTTAAA +
Preference number: 2 (lower is better)
Translates to: FGSAVKKYASYLKFRWQEKCSRW*DGSVVK
Trigger: TTTAACCACTGAGCCATCTCACCAGCGAGAACATTT...TTCCTGCCACCTGAACTTCAGGTATGATGCATATTTCTTCACTGCAGAACCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR TCA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTGCTAGCTGTTTGAATTaGAGAAAGTCAAAGTGTTTC +
Preference number: 2 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLASCLN*RKSKCF
Trigger: GAAACACTTTGACTTTCTTCAATTCAAACAGCTAGC...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTTCTCATAAAAGGTACTaGTTATTTCTCTGTTCCTGG +
Preference number: 2 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLSHKRY*LFLCSW
Trigger: CCAGGAACAGAGAAATAAGCAGTACCTTTTATGAGA...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp GGCACTCTGAGGAATATCCTCTACATACCAATACCCCAATGCACTTCCTTGTCTTCCATGTTGCTAATTTaGTTTCACAACAACTTCCCG +
Preference number: 2 (lower is better)
Translates to: GTLRNILYIPIPQCTSLSSMLLI*FHNNFP
Trigger: CGGGAAGTTGTTGTGAAACCAAATTAGCAACATGGA...AGACAAGGAAGTGCATTGGGGTATTGGTATGTAGAGGATATTCCTCAGAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CCA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTTATACTAGAAGTTCCTaGCCAACTTGGAATACATAC +
Preference number: 2 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLYTRSS*PTWNTY
Trigger: GTATGTATTCCAAGTTGGCCAGGAACTTCTAGTATA...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR GCA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTATCAGAGAAAAGATCTaGAATGTCCCAATTATCCAT +
Preference number: 2 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLIREKI*NVPIIH
Trigger: ATGGATAATTGGGACATTGCAGATCTTTTCTCTGAT...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CAA 90 bp TTCACGATCAGTATATTTCACGTGAACACCAAAAAGCTACTGGAGTaGACTTATAAGGCAAAACCACACAGATCCAGTGAGAGCAAAGAG +
Preference number: 2 (lower is better)
Translates to: FTISIFHVNTKKLLE*TYKAKPHRSSESKE
Trigger: CTCTTTGCTCTCACTGGATCTGTGTGGTTTTGCCTTATAAGTCAACTCCAGTAGCTTTTTGGTGTTCACGTGAAATATACTGATCGTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CAA 90 bp ATAGCAGCCAGAGTCAGTACCAAGGGTTCAAAATTGGCCTTGAAGTaGACTATCTCCACAATACATTTGAAAGGAAAGATTTGGAAACTC +
Preference number: 2 (lower is better)
Translates to: IAARVSTKGSKLALK*TISTIHLKGKIWKL
Trigger: GAGTTTCCAAATCTTTCCTTTCAAATGTATTGTGGAGATAGTCAACTTCAAGGCCAATTTTGAACCCTTGGTACTGACTCTGGCTGCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CAA 90 bp GAATTCATAGCAGCCAGAGTCAGTACCAAGGGTTCAAAATTGGCCTaGAAGTTGACTATCTCCACAATACATTTGAAAGGAAAGATTTGG +
Preference number: 2 (lower is better)
Translates to: EFIAARVSTKGSKLA*KLTISTIHLKGKIW
Trigger: CCAAATCTTTCCTTTCAAATGTATTGTGGAGATAGTCAACTTCAAGGCCAATTTTGAACCCTTGGTACTGACTCTGGCTGCTATGAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CAA 90 bp AGTTCCTGGCCAACTTGGAATACATACAGAATAAGACCTTGGTATTaGAAACAAATAACAATAGCAGATGATCCTCCCCCTTCTCTTCAA +
Preference number: 2 (lower is better)
Translates to: SSWPTWNTYRIRPWY*KQITIADDPPPSLQ
Trigger: TTGAAGAGAAGGGGGAGGATCATCTGCTATTGTTATTTGTTTCAAATACCAAGGTCTTATTCTGTATGTATTCCAAGTTGGCCAGGAACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 72 bp TGTCATGCGTCTCCTGAGAGGACGGGGACGTCTCATTaGGCAGCTCCATCAGCCTCCGCCTCCGACGGAAGT +
Preference number: 3 (lower is better)
Translates to: CHASPERTGTSH*AAPSASASDGS
Trigger: ACTTCCGTCGGAGGCGGAGGCTGATGGAGCTGCTCAATGAGACGTCCCCGTCCTCTCAGGAGACGCATGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR TCA 72 bp ATCCCAGCACTCGGGAGGCAGAGGCTGGCGGATTTCTaGGTTCGAGGCCAGCTGGTCTACAAAGTGAGTTCC +
Preference number: 3 (lower is better)
Translates to: IPALGRQRLADF*VRGQLVYKVSS
Trigger: GGAACTCACTTTGTAGACCAGCTGGCCTCGAACTCAGAAATCCGCCAGCCTCTGCCTCCCGAGTGCTGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 72 bp CCCACAGTCCCACCAGGGGCAAACTCCCCAGGTCCCTaGAGTTCTCTCATCAGGTCCTACCACTTCTTCGTT +
Preference number: 3 (lower is better)
Translates to: PTVPPGANSPGP*SSLIRSYHFFV
Trigger: AACGAAGAAGTGGTAGGACCTGATGAGAGAACTGCAGGGACCTGGGGAGTTTGCCCCTGGTGGGACTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp AGATCCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTCTCGCCACTGTTGTGTaGTTCTGGGATAGGGGACAA +
Preference number: 3 (lower is better)
Translates to: RSSESKEGQAGWWWHPLSLATVV*FWDRGQ
Trigger: TTGTCCCCTATCCCAGAACAACACAACAGTGGCGAG...AGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGGATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR TCA 72 bp TGCTTCCTCAGACAGAAGGGACTGTCATGCGTCTCCTaGGAGGACGGGGACGTCTCATTGAGCAGCTCCATC +
Preference number: 3 (lower is better)
Translates to: CFLRQKGLSCVS*EDGDVSLSSSI
Trigger: GATGGAGCTGCTCAATGAGACGTCCCCGTCCTCTCAGGAGACGCATGACAGTCCCTTCTGTCTGAGGAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR-3UTR CAA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTAGAGGGGCAGGCGGGTaGGTGGTGGCATCCCTTGTC +
Preference number: 3 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLRGAGG*VVASLV
Trigger: GACAAGGGATGCCACCACCAACCCGCCTGCCCCTCT...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp GACGTCTCATTGAGCAGCTCCATCAGCCTCCGCCTCCGACGGAAGTTCATTCTGGCTCTGCCTCTTTCCTaGTTGTGGCTTCACCTTCCT +
Preference number: 3 (lower is better)
Translates to: DVSLSSSISLRLRRKFILALPLS*LWLHLP
Trigger: AGGAAGGTGAAGCCACAACAAGGAAAGAGGCAGAGC...CAGAATGAACTTCCGTCGGAGGCGGAGGCTGATGGAGCTGCTCAATGAGACGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR TCA 72 bp CTTCCTGAACCAACCAGTCCAGGAATTCGGATGCCATaGAGGTCCGCTCATACTTCACCCCCTCCTCCTCTC +
Preference number: 3 (lower is better)
Translates to: LPEPTSPGIRMP*RSAHTSPPPPL
Trigger: GAGAGGAGGAGGGGGTGAAGTATGAGCGGACCTTCATGGCATCCGAATTCCTGGACTGGTTGGTTCAGGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR GCA 72 bp CTGCAATGTCCCAATTATCCATGTGCCTGGCAGCCTTaGCTCGCCACTGTTGTGTTGTTCTGGGATAGGGGA +
Preference number: 3 (lower is better)
Translates to: LQCPNYPCAWQP*LATVVLFWDRG
Trigger: TCCCCTATCCCAGAACAACACAACAGTGGCGAGGCAAGGCTGCCAGGCACATGGATAATTGGGACATTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR GCA 72 bp TTCACCTTCCTGAACCAACCAGTCCAGGAATTCGGATaGCATGAAGGTCCGCTCATACTTCACCCCCTCCTC +
Preference number: 3 (lower is better)
Translates to: FTFLNQPVQEFG*HEGPLILHPLL
Trigger: GAGGAGGGGGTGAAGTATGAGCGGACCTTCATGGCATCCGAATTCCTGGACTGGTTGGTTCAGGAAGGTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR GCA 72 bp TGGATGATCCCATGGTCCATAAGCCGGTGGCAAAGCTaGTCTGCCTCTTTCCTTGTTGTGGCTTCACCTTCC +
Preference number: 3 (lower is better)
Translates to: WMIPWSISRWQS*SASFLVVASPS
Trigger: GGAAGGTGAAGCCACAACAAGGAAAGAGGCAGAGCAGCTTTGCCACCGGCTTATGGACCATGGGATCATCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR CCA 72 bp GCGAAGGCTAAACGCAAGGCCTCTAAAGAGGAAGTCTaGGCAGAAAGGCAAGGGGTTGGAGCACTGGAGAAA +
Preference number: 3 (lower is better)
Translates to: AKAKRKASKEEV*AERQGVGALEK
Trigger: TTTCTCCAGTGCTCCAACCCCTTGCCTTTCTGCCCAGACTTCCTCTTTAGAGGCCTTGCGTTTAGCCTTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CCA 72 bp GCCGGTGGCAAAGCTGCTCTGCCTCTTTCCTTGTTGTaGCTTCACCTTCCTGAACCAACCAGTCCAGGAATT +
Preference number: 3 (lower is better)
Translates to: AGGKAALPLSLL*LHLPEPTSPGI
Trigger: AATTCCTGGACTGGTTGGTTCAGGAAGGTGAAGCCACAACAAGGAAAGAGGCAGAGCAGCTTTGCCACCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
3UTR-3UTR CAA 90 bp AACTCCCCAGGTCCCTGCAGTTCTCTCATCAGGTCCTACCACTTCTTCGTTTGCCTCGCCACTGTTGTGTaGTTCTGGGATAGGGGACAA +
Preference number: 3 (lower is better)
Translates to: NSPGPCSSLIRSYHFFVCLATVV*FWDRGQ
Trigger: TTGTCCCCTATCCCAGAACAACACAACAGTGGCGAG...GCAAACGAAGAAGTGGTAGGACCTGATGAGAGAACTGCAGGGACCTGGGGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 72 bp CAAACAGTCCTCGATCTGCAGATGCTGAGCGTCTACTaGGGGAGACAGGCATGTGACCAAGCAAGGACATTC +
Preference number: 3 (lower is better)
Translates to: QTVLDLQMLSVY*GRQACDQARTF
Trigger: GAATGTCCTTGCTTGGTCACATGCCTGTCTCCCTCAGTAGACGCTCAGCATCTGCAGATCGAGGACTGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 72 bp GTGGTCTCAGACTTGCTTTGTTACCAAGGATGTCAGTaGATTCCTGATCCTCCTGCCTCCTCCACCCACCGA +
Preference number: 3 (lower is better)
Translates to: VVSDLLCYQGCQ*IPDPPASSTHR
Trigger: TCGGTGGGTGGAGGAGGCAGGAGGATCAGGAATTCACTGACATCCTTGGTAACAAAGCAAGTCTGAGACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp CCCAGATTGCAGGTGCTGGTTCCTTATTCTTACCACACAAGCACAGTAGGCATGACGCTTGCCTTGAATTaGCAGCACTTCTGCCTTGCC +
Preference number: 3 (lower is better)
Translates to: PRLQVLVPYSYHTSTVGMTLALN*QHFCLA
Trigger: GGCAAGGCAGAAGTGCTGCAAATTCAAGGCAAGCGT...CATGCCTACTGTGCTTGTGTGGTAAGAATAAGGAACCAGCACCTGCAATCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR TCA 72 bp CTAAGAGGTCAGCCAAACTGTTCTTCACTCCCTCTCTaGCAGACAGGGGCTTCTGAGGTTCTGAGTTTGGCT +
Preference number: 3 (lower is better)
Translates to: LRGQPNCSSLPL*QTGASEVLSLA
Trigger: AGCCAAACTCAGAACCTCAGAAGCCCCTGTCTGTCAGAGAGGGAGTGAAGAACAGTTTGGCTGACCTCTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 72 bp GCAGATGCTGAGCGTCTACTGAGGGAGACAGGCATGTaGCCAAGCAAGGACATTCTAAAAGTGACTGTGCTC +
Preference number: 3 (lower is better)
Translates to: ADAERLLRETGM*PSKDILKVTVL
Trigger: GAGCACAGTCACTTTTAGAATGTCCTTGCTTGGTCACATGCCTGTCTCCCTCAGTAGACGCTCAGCATCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp GGTGCTGGGATTACAGGAACATGCTACGATATCTGGTTCAAAGGAAGTCTTTTCATGTGCCTGGCAGCCTaGCCTCGCCACTGTTGTGTT +
Preference number: 3 (lower is better)
Translates to: GAGITGTCYDIWFKGSLFMCLAA*PRHCCV
Trigger: AACACAACAGTGGCGAGGCAAGGCTGCCAGGCACAT...GAAAAGACTTCCTTTGAACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp CTCATTTGGCACTCTGAGGAATATCCTCTACATACCAATACCCCAATGCACTTCATGTGCCTGGCAGCCTaGCCTCGCCACTGTTGTGTT +
Preference number: 3 (lower is better)
Translates to: LIWHSEEYPLHTNTPMHFMCLAA*PRHCCV
Trigger: AACACAACAGTGGCGAGGCAAGGCTGCCAGGCACAT...GAAGTGCATTGGGGTATTGGTATGTAGAGGATATTCCTCAGAGTGCCAAATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp CCACTAAAGCCAAGTCCCTTAAATGTGGACACTTGCCAAGTGCAATCTTGCCAGTCCCGAGTGTGGTTTTaGAGACAGGCACTCACACTG +
Preference number: 3 (lower is better)
Translates to: PLKPSPLNVDTCQVQSCQSRVWF*RQALTL
Trigger: CAGTGTGAGTGCCTGTCTCAAAAACCACACTCGGGA...CTGGCAAGATTGCACTTGGCAAGTGTCCACATTTAAGGGACTTGGCTTTAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR TCA 72 bp ATGTTGCCCAGGCTCACATTACTACCAGAACTCAAGTaGTCATCCTCCTGCCTCAGCATCCTAAGTAGCCCA +
Preference number: 3 (lower is better)
Translates to: MLPRLTLLPELK*SSSCLSILSSP
Trigger: TGGGCTACTTAGGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTGGGCAACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR GCA 72 bp TCATCCTCCTGCCTCAGCATCCTAAGTAGCCCAGATTaGAGGTGCTGGTTCCTTATTCTTACCACACAAGCA +
Preference number: 3 (lower is better)
Translates to: SSSCLSILSSPD*RCWFLILTTQA
Trigger: TGCTTGTGTGGTAAGAATAAGGAACCAGCACCTGCAATCTGGGCTACTTAGGATGCTGAGGCAGGAGGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CCA 72 bp AGAAAAGATCTGCAATGTCCCAATTATCCATGTGCCTaGCAGCCTTGCCTCGCCACTGTTGTGTTGTTCTGG +
Preference number: 3 (lower is better)
Translates to: RKDLQCPNYPCA*QPCLATVVLFW
Trigger: CCAGAACAACACAACAGTGGCGAGGCAAGGCTGCCAGGCACATGGATAATTGGGACATTGCAGATCTTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp ACCTTTAATCCCAGCACTCGGGAGGCAGAGGCTGGCGGATTTCTGAGTTCGAGGTGGCATTTTTCCATGTaGCTAATTTGGTTTCACAAC +
Preference number: 3 (lower is better)
Translates to: TFNPSTREAEAGGFLSSRWHFSM*LIWFHN
Trigger: GTTGTGAAACCAAATTAGCAACATGGAAAAATGCCA...CCTCGAACTCAGAAATCCGCCAGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp GGCAAACTCCCCAGGTCCCTGCAGTTCTCTCATCAGGTCCTACCACTTCTTCGTTGCTCTAATAGAGGTTaGGATGGGATTTATTGGTCT +
Preference number: 3 (lower is better)
Translates to: GKLPRSLQFSHQVLPLLRCSNRG*DGIYWS
Trigger: AGACCAATAAATCCCATCCAAACCTCTATTAGAGCA...ACGAAGAAGTGGTAGGACCTGATGAGAGAACTGCAGGGACCTGGGGAGTTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 72 bp TCAGAGAAAAGATCTGCAATGTCCCAATTATCCATGTaGCTGGCAGCCTTGCCTCGCCACTGTTGTGTTGTT +
Preference number: 3 (lower is better)
Translates to: SEKRSAMSQLSM*LAALPRHCCVV
Trigger: AACAACACAACAGTGGCGAGGCAAGGCTGCCAGGCACATGGATAATTGGGACATTGCAGATCTTTTCTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR GCA 72 bp TTTTTGAGACAGGCACTCACACTGTTAGTAGACGCTTaGCTTGAATTTGCAGCACTTCTGCCTTGCCCTCCT +
Preference number: 3 (lower is better)
Translates to: FLRQALTLLVDA*LEFAALLPCPP
Trigger: AGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAGGCAAGCGTCTACTAACAGTGTGAGTGCCTGTCTCAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CCA 72 bp GAACACCTGATCTTTCTGCCTCCACTTCCTGGGTGCTaGGATTACAGGAACATGCTACGATATCTGGTTCAA +
Preference number: 3 (lower is better)
Translates to: EHLIFLPPLPGC*DYRNMLRYLVQ
Trigger: TTGAACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACCCAGGAAGTGGAGGCAGAAAGATCAGGTGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CCA 72 bp TCTCTAGATTGTCTGGAACTACACGACCTGGAACTGTaGCTTGGAGTGGTTTGCATGAGGCCATCTGTGTTA +
Preference number: 3 (lower is better)
Translates to: SLDCLELHDLEL*LGVVCMRPSVL
Trigger: TAACACAGATGGCCTCATGCAAACCACTCCAAGCCACAGTTCCAGGTCGTGTAGTTCCAGACAATCTAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp GGTGCTGGGATTACAGGAACATGCTACGATATCTGGTTCAAAGGAAGTCTTTTCACTCTAAACTGGGCTTaGGTGCGTGTGTGTGTGGTG +
Preference number: 3 (lower is better)
Translates to: GAGITGTCYDIWFKGSLFTLNWA*VRVCVV
Trigger: CACCACACACACACGCACCAAAGCCCAGTTTAGAGT...GAAAAGACTTCCTTTGAACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp ATCACCCACGGCACAGTGGTCTGTTTTATCTTTCACCTCAAGATGCAACTGAAAACTCTAAACTGGGCTTaGGTGCGTGTGTGTGTGGTG +
Preference number: 3 (lower is better)
Translates to: ITHGTVVCFIFHLKMQLKTLNWA*VRVCVV
Trigger: CACCACACACACACGCACCAAAGCCCAGTTTAGAGT...TTTCAGTTGCATCTTGAGGTGAAAGATAAAACAGACCACTGTGCCGTGGGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTAGTACTCCTGCTATCTaGACAGGCAAGGAACACCAA +
Preference number: 3 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLSTPAI*TGKEHQ
Trigger: TTGGTGTTCCTTGCCTGTCAAGATAGCAGGAGTACT...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 72 bp TTTGAACACCTGATCTTTCTGCCTCCACTTCCTGGGTaGTGGGATTACAGGAACATGCTACGATATCTGGTT +
Preference number: 3 (lower is better)
Translates to: FEHLIFLPPLPG*WDYRNMLRYLV
Trigger: AACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACCCAGGAAGTGGAGGCAGAAAGATCAGGTGTTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CCA 72 bp TGTGGTATGTGCACTTGTGTGGAAAGATCCCGAGTGTaGTTTTTGAGACAGGCACTCACACTGTTAGTAGAC +
Preference number: 3 (lower is better)
Translates to: CGMCTCVERSRV*FLRQALTLLVD
Trigger: GTCTACTAACAGTGTGAGTGCCTGTCTCAAAAACCACACTCGGGATCTTTCCACACAAGTGCACATACCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp GGTGCTGGGATTACAGGAACATGCTACGATATCTGGTTCAAAGGAAGTCTTTTCTGGGGTTTCACTATGTaGCCCAGGCTCACATTACTA +
Preference number: 3 (lower is better)
Translates to: GAGITGTCYDIWFKGSLFWGFTM*PRLTLL
Trigger: TAGTAATGTGAGCCTGGGCAACATAGTGAAACCCCA...GAAAAGACTTCCTTTGAACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR TCA 72 bp CAGCTGAATGACTTTATCCCACAGAAGAATCTACTGTaGCAGGGATGGAAGGCAAGAGACTCAAGGAATTCG +
Preference number: 3 (lower is better)
Translates to: QLNDFIPQKNLL*QGWKARDSRNS
Trigger: CGAATTCCTTGAGTCTCTTGCCTTCCATCCCTGTCACAGTAGATTCTTCTGTGGGATAAAGTCATTCAGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 72 bp GAGAAATGCACTGTAGTACATGGTAGTTACAGCAGGTaGTCCAACTTGAAGACCACTGAATTTGCTCAGACC +
Preference number: 3 (lower is better)
Translates to: EKCTVVHGSYSR*SNLKTTEFAQT
Trigger: GGTCTGAGCAAATTCAGTGGTCTTCAAGTTGGAGCACCTGCTGTAACTACCATGTACTACAGTGCATTTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp CAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCTTGGCATTTTTCCATGTaGCTAATTTGGTTTCACAAC +
Preference number: 3 (lower is better)
Translates to: QAHITTRTQVIILLPQHPWHFSM*LIWFHN
Trigger: GTTGTGAAACCAAATTAGCAACATGGAAAAATGCCA...AGGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR TCA 72 bp CTTGACAGGCAAGGAACACCAAAGACAGAAACTAGCTaGGATTCATCTTCTAAGGTGCTATCGCATCCGAAT +
Preference number: 3 (lower is better)
Translates to: LDRQGTPKTETS*DSSSKVLSHPN
Trigger: ATTCGGATGCGATAGCACCTTAGAAGATGAATCTCAGCTAGTTTCTGTCTTTGGTGTTCCTTGCCTGTCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 72 bp CCTCAGAGTCGTGAGCAAATAAAAGGAGCTATTGTGTaGTATAGTTTGGGGGTTGCCCATCAGACAACAGTA +
Preference number: 3 (lower is better)
Translates to: PQSREQIKGAIV*YSLGVAHQTTV
Trigger: TACTGTTGTCTGATGGGCAACCCCCAAACTATATCACACAATAGCTCCTTTTATTTGCTCACGACTCTGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 72 bp CTCTTTGCCACTGTGCTCTCTCTCCAGCTAGCTGTTTaGATTGAAGAAAGTCAAAGTGTTTCGTTTCTGAGC +
Preference number: 3 (lower is better)
Translates to: LFATVLSLQLAV*IEESQSVSFLS
Trigger: GCTCAGAAACGAAACACTTTGACTTTCTTCAATTCAAACAGCTAGCTGGAGAGAGAGCACAGTGGCAAAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 72 bp ATGATTAAACTGTGTTCTACCCAGCCCAAGCAGCACTaGCATTTTAGGACCCATGGACTTGGAAGGTTTTGT +
Preference number: 3 (lower is better)
Translates to: MIKLCSTQPKQH*HFRTHGLGRFC
Trigger: ACAAAACCTTCCAAGTCCATGGGTCCTAAAATGTCAGTGCTGCTTGGGCTGGGTAGAACACAGTTTAATCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 72 bp TTGAGTCCACAGTGCCATAAACCTGTTTCAGCTGAATaGCTTTATCCCACAGAAGAATCTACTGTGACAGGG +
Preference number: 3 (lower is better)
Translates to: LSPQCHKPVSAE*LYPTEESTVTG
Trigger: CCCTGTCACAGTAGATTCTTCTGTGGGATAAAGTCATTCAGCTGAAACAGGTTTATGGCACTGTGGACTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 72 bp ATAGCCTCAAATTCCATTCTCCAGCACGAATCTTTGTaGTGTGAGCCACCCTGCCCAGTTGTAATTAAACTT +
Preference number: 3 (lower is better)
Translates to: IASNSILQHESL*CEPPCPVVIKL
Trigger: AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAGAATGGAATTTGAGGCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 72 bp TGCATTATATCTATATTTGTGTACCATGTGCGCCCCTaGTACCCAAGAAGATCAGAAGAGGGTGTCAGATCT +
Preference number: 3 (lower is better)
Translates to: CIISIFVYHVRP*YPRRSEEGVRS
Trigger: AGATCTGACACCCTCTTCTGATCTTCTTGGGTACCAGGGGCGCACATGGTACACAAATATAGATATAATGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp CATGTTGCTAATTTGGTTTCACAACAACTTCCCGAAAACATGAAGAACAATGATGCTGGGATTATAGACTaGAGCCACCAAGCCCCTGCT +
Preference number: 3 (lower is better)
Translates to: HVANLVSQQLPENMKNNDAGIID*SHQAPA
Trigger: AGCAGGGGCTTGGTGGCTCAAGTCTATAATCCCAGC...ATCATTGTTCTTCATGTTTTCGGGAAGTTGTTGTGAAACCAAATTAGCAACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp TTGCCAAGTGCAATCTTGCCAGAGACTCTGAGTCTTACACAGGTAAGGACAGACAAAAAGCTACTGGAGTaGACTTATAAGGCAAAACCA +
Preference number: 3 (lower is better)
Translates to: LPSAILPETLSLTQVRTDKKLLE*TYKAKP
Trigger: TGGTTTTGCCTTATAAGTCAACTCCAGTAGCTTTTT...GTCTGTCCTTACCTGTGTAAGACTCAGAGTCTCTGGCAAGATTGCACTTGGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp CAAGATGGAGCTTGTAGTGGCAAGCAGATCCCTAAATTGGCATCACATCCCATGAAAAAGCTACTGGAGTaGACTTATAAGGCAAAACCA +
Preference number: 3 (lower is better)
Translates to: QDGACSGKQIPKLASHPMKKLLE*TYKAKP
Trigger: TGGTTTTGCCTTATAAGTCAACTCCAGTAGCTTTTT...CATGGGATGTGATGCCAATTTAGGGATCTGCTTGCCACTACAAGCTCCATCTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR TCA 72 bp GGTTTCACAACAACTTCCCGAAAACATGAAGAACAATaGTTGAGAACTCTAAACTGGGCTTTGGTGCGTGTG +
Preference number: 3 (lower is better)
Translates to: GFTTTSRKHEEQ*LRTLNWALVRV
Trigger: CACACGCACCAAAGCCCAGTTTAGAGTTCTCAATCATTGTTCTTCATGTTTTCGGGAAGTTGTTGTGAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR TCA 72 bp ATAAAGTCAGCCACACCTCATCTAGGCAAAGATGGCTaGTCTTCCTCACATTCCCTTCCATTTCTCAATGAA +
Preference number: 3 (lower is better)
Translates to: IKSATPHLGKDG*SSSHSLPFLNE
Trigger: TTCATTGAGAAATGGAAGGGAATGTGAGGAAGATCAGCCATCTTTGCCTAGATGAGGTGTGGCTGACTTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 72 bp TGCAGTTCTCTCATCAGGTCCTACCACTTCTTCGTTTaGATCTTTGAGGCAATATTTTATGTGGTCTCAGAC +
Preference number: 3 (lower is better)
Translates to: CSSLIRSYHFFV*IFEAIFYVVSD
Trigger: GTCTGAGACCACATAAAATATTGCCTCAAAGATGCAAACGAAGAAGTGGTAGGACCTGATGAGAGAACTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 72 bp CCATTATGTAATTTTAGGAAGCAAACTCAAGTCCTCTaGAAGAGCAATCTAGGCTCTTTGCCACTGTGCTCT +
Preference number: 3 (lower is better)
Translates to: PLCNFRKQTQVL*KSNLGSLPLCS
Trigger: AGAGCACAGTGGCAAAGAGCCTAGATTGCTCTTCCAGAGGACTTGAGTTTGCTTCCTAAAATTACATAATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp CATGTTGCTAATTTGGTTTCACAACAACTTCCCGAAAACATGAAGAACAATGATTCCCGAGTGTGGTTTTaGAGACAGGCACTCACACTG +
Preference number: 3 (lower is better)
Translates to: HVANLVSQQLPENMKNNDSRVWF*RQALTL
Trigger: CAGTGTGAGTGCCTGTCTCAAAAACCACACTCGGGA...ATCATTGTTCTTCATGTTTTCGGGAAGTTGTTGTGAAACCAAATTAGCAACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp GGTGCTGGGATTACAGGAACATGCTACGATATCTGGTTCAAAGGAAGTCTTTTCTTCCATGTTGCTAATTaGGTTTCACAACAACTTCCC +
Preference number: 3 (lower is better)
Translates to: GAGITGTCYDIWFKGSLFFHVAN*VSQQLP
Trigger: GGGAAGTTGTTGTGAAACCAAATTAGCAACATGGAA...GAAAAGACTTCCTTTGAACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp ATCACCCACGGCACAGTGGTCTGTTTTATCTTTCACCTCAAGATGCAACTGAAATTCCATGTTGCTAATTaGGTTTCACAACAACTTCCC +
Preference number: 3 (lower is better)
Translates to: ITHGTVVCFIFHLKMQLKFHVAN*VSQQLP
Trigger: GGGAAGTTGTTGTGAAACCAAATTAGCAACATGGAA...TTTCAGTTGCATCTTGAGGTGAAAGATAAAACAGACCACTGTGCCGTGGGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp CTCATTTGGCACTCTGAGGAATATCCTCTACATACCAATACCCCAATGCACTTCACTGCTTCTAAGGTGTaGAATGCTTTAAGGACATTC +
Preference number: 3 (lower is better)
Translates to: LIWHSEEYPLHTNTPMHFTASKV*NALRTF
Trigger: GAATGTCCTTAAAGCATTCAACACCTTAGAAGCAGT...GAAGTGCATTGGGGTATTGGTATGTAGAGGATATTCCTCAGAGTGCCAAATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp TTTGGTTCTGCAGTGAAGAAATATGCATCATACCTGAAGTTCAGGTGGCAGGAATTAACACATGGGACTTaGGGAGACAGACATTCAAGA +
Preference number: 3 (lower is better)
Translates to: FGSAVKKYASYLKFRWQELTHGT*GDRHSR
Trigger: TCTTGAATGTCTGTCTCCCAAAGTCCCATGTGTTAA...TTCCTGCCACCTGAACTTCAGGTATGATGCATATTTCTTCACTGCAGAACCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR-3UTR CAA 90 bp TTTGGTTCTGCAGTGAAGAAATATGCATCATACCTGAAGTTCAGGTGGCAGGAAACTGCTTCTAAGGTGTaGAATGCTTTAAGGACATTC +
Preference number: 3 (lower is better)
Translates to: FGSAVKKYASYLKFRWQETASKV*NALRTF
Trigger: GAATGTCCTTAAAGCATTCAACACCTTAGAAGCAGT...TTCCTGCCACCTGAACTTCAGGTATGATGCATATTTCTTCACTGCAGAACCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 72 bp GCATCTTTGAGGCAATATTTTATGTGGTCTCAGACTTaGTTTGTTACCAAGGATGTCAGTGAATTCCTGATC +
Preference number: 3 (lower is better)
Translates to: ASLRQYFMWSQT*FVTKDVSEFLI
Trigger: GATCAGGAATTCACTGACATCCTTGGTAACAAAGCAAGTCTGAGACCACATAAAATATTGCCTCAAAGATGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 72 bp GAATTTAAGACTAGCCTGTGCTATACTAGAAGTTCCTaGCCAACTTGGAATACATACAGAATAAGACCTTGG +
Preference number: 3 (lower is better)
Translates to: EFKTSLCYTRSS*PTWNTYRIRPW
Trigger: CCAAGGTCTTATTCTGTATGTATTCCAAGTTGGCCAGGAACTTCTAGTATAGCACAGGCTAGTCTTAAATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR TCA 72 bp AACATCTTTGGGGATGTGGCAAAGATTTCTCTAAGATaGCACACACACACACCCAAAGGAGCTAATAAAAAT +
Preference number: 3 (lower is better)
Translates to: NIFGDVAKISLR*HTHTPKGANKN
Trigger: ATTTTTATTAGCTCCTTTGGGTGTGTGTGTGTGTCATCTTAGAGAAATCTTTGCCACATCCCCAAAGATGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR GCA 72 bp TCATTTTGGCATACAGCTCATTTGTCCTTTTGGTTCTaGAGTGAAGAAATATGCATCATACCTGAAGTTCAG +
Preference number: 3 (lower is better)
Translates to: SFWHTAHLSFWF*SEEICIIPEVQ
Trigger: CTGAACTTCAGGTATGATGCATATTTCTTCACTGCAGAACCAAAAGGACAAATGAGCTGTATGCCAAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 72 bp GAAAGTTGCATCTCTGTCAAAATTCACTATGTAAAATaGCTCTCATTTGGCACTCTGAGGAATATCCTCTAC +
Preference number: 3 (lower is better)
Translates to: ESCISVKIHYVK*LSFGTLRNILY
Trigger: GTAGAGGATATTCCTCAGAGTGCCAAATGAGAGCCATTTTACATAGTGAATTTTGACAGAGATGCAACTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CCA 72 bp ACTTCTTCGTTTGCATCTTTGAGGCAATATTTTATGTaGTCTCAGACTTGCTTTGTTACCAAGGATGTCAGT +
Preference number: 3 (lower is better)
Translates to: TSSFASLRQYFM*SQTCFVTKDVS
Trigger: ACTGACATCCTTGGTAACAAAGCAAGTCTGAGACCACATAAAATATTGCCTCAAAGATGCAAACGAAGAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 72 bp ACTAGCCTGTGCTATACTAGAAGTTCCTGGCCAACTTaGAATACATACAGAATAAGACCTTGGTATTTGAAA +
Preference number: 3 (lower is better)
Translates to: TSLCYTRSSWPT*NTYRIRPWYLK
Trigger: TTTCAAATACCAAGGTCTTATTCTGTATGTATTCCAAGTTGGCCAGGAACTTCTAGTATAGCACAGGCTAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 72 bp ACATTCTTGGAAATTTGTGTTAGCTGGCCACATTTCTaGGGATGCTACTTTTATTTTAAGCTGGATGAAATC +
Preference number: 3 (lower is better)
Translates to: TFLEICVSWPHF*GCYFYFKLDEI
Trigger: GATTTCATCCAGCTTAAAATAAAAGTAGCATCCCCAGAAATGTGGCCAGCTAACACAAATTTCCAAGAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR TCA 72 bp TTGCTAATTTGGTTTCACAACAACTTCCCGAAAACATaGAGAACAATGATTGAGAACTCTAAACTGGGCTTT +
Preference number: 3 (lower is better)
Translates to: LLIWFHNNFPKT*RTMIENSKLGF
Trigger: AAAGCCCAGTTTAGAGTTCTCAATCATTGTTCTTCATGTTTTCGGGAAGTTGTTGTGAAACCAAATTAGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR GCA 72 bp TCAATCATCAATTTCAACCAGTCAGAAACACCACAGTaGTCTGGAGTTATTCTGATCATTTATAGTCAAAGT +
Preference number: 3 (lower is better)
Translates to: SIINFNQSETPQ*SGVILIIYSQS
Trigger: ACTTTGACTATAAATGATCAGAATAACTCCAGAGCACTGTGGTGTTTCTGACTGGTTGAAATTGATGATTGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CCA 72 bp GCAGTGAAGAAATATGCATCATACCTGAAGTTCAGGTaGCAGGAAATCATTATTAATGTCAATCATCAATTT +
Preference number: 3 (lower is better)
Translates to: AVKKYASYLKFR*QEIIINVNHQF
Trigger: AAATTGATGATTGACATTAATAATGATTTCCTGCCACCTGAACTTCAGGTATGATGCATATTTCTTCACTGC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp AGATCCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTGTGTGGGGCTGCTGCTaGAGTAGCCACTGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: RSSESKEGQAGWWWHPLSVWGCC*SSHCCR
Trigger: GCGGCAGCAGTGGCTACTTCAGCAGCAGCCCCACAC...AGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGGATCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp CCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTATTCCGGCTGCAGGTCCACTaGGGTCCACAGCCTGGATGT +
Preference number: 4 (lower is better)
Translates to: PVRAKRGRRVGGGIPCLFRLQVH*GPQPGC
Trigger: ACATCCAGGCTGTGGACCCCAGTGGACCTGCAGCCG...GAATAGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp AGATCCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTACGGGGACGTCTCATTaGGCAGCTCCATCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: RSSESKEGQAGWWWHPLSTGTSH*AAPSAS
Trigger: GGAGGCTGATGGAGCTGCTCAATGAGACGTCCCCGT...AGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGGATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp AGATCCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTCGTGAATGTCTTCCTTaGGTACGGAGCCCCCGGAGT +
Preference number: 4 (lower is better)
Translates to: RSSESKEGQAGWWWHPLSRECLP*VRSPRS
Trigger: ACTCCGGGGGCTCCGTACGCAAGGAAGACATTCACG...AGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGGATCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp GGCACTCTGAGGAATATCCTCTACATACCAATACCCCAATGCACTTCCTTGTCTTCCAGCTCTCTCTGCTaGACCCCGCCGCTCCCGCCG +
Preference number: 4 (lower is better)
Translates to: GTLRNILYIPIPQCTSLSSSSLC*TPPLPP
Trigger: CGGCGGGAGCGGCGGGGTGCAGCAGAGAGAGCTGGA...AGACAAGGAAGTGCATTGGGGTATTGGTATGTAGAGGATATTCCTCAGAGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp AGATCCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTGATTTCCGACTGTCGTaGCTCTGCTTCCTCAGACAG +
Preference number: 4 (lower is better)
Translates to: RSSESKEGQAGWWWHPLSDFRLS*LCFLRQ
Trigger: CTGTCTGAGGAAGCAGAGCCACGACAGTCGGAAATC...AGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGGATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp ATTGAGCAGCTCCATCAGCCTCCGCCTCCGACGGAAGTTCATTCTGAACTGGTACCGCAGCCTGCAGCCTaGGGTTATTACACTCAGAGG +
Preference number: 4 (lower is better)
Translates to: IEQLHQPPPPTEVHSELVPQPAA*GYYTQR
Trigger: CCTCTGAGTGTAATAACCTCAGGCTGCAGGCTGCGG...TACCAGTTCAGAATGAACTTCCGTCGGAGGCGGAGGCTGATGGAGCTGCTCAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
CDS-3UTR TCA 90 bp CCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTATTCGGAATTCGGATGCCATaGAGGTCCGCTCATACTTCA +
Preference number: 4 (lower is better)
Translates to: PVRAKRGRRVGGGIPCLFGIRMP*RSAHTS
Trigger: TGAAGTATGAGCGGACCTTCATGGCATCCGAATTCC...GAATAGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp CCACGGCACAGTGGTCTGTTTTATCTTTCACCTCAAGATGCAACTGAAACAGGCGTGTGGGGCTGCTGCTaGAGTAGCCACTGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: PRHSGLFYLSPQDATETGVWGCC*SSHCCR
Trigger: GCGGCAGCAGTGGCTACTTCAGCAGCAGCCCCACAC...GCCTGTTTCAGTTGCATCTTGAGGTGAAAGATAAAACAGACCACTGTGCCGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp CCCAGATTGCAGGTGCTGGTTCCTTATTCTTACCACACAAGCACAGTAGGCATGCGGCTGCAGGTCCACTaGGGTCCACAGCCTGGATGT +
Preference number: 4 (lower is better)
Translates to: PRLQVLVPYSYHTSTVGMRLQVH*GPQPGC
Trigger: ACATCCAGGCTGTGGACCCCAGTGGACCTGCAGCCG...CATGCCTACTGTGCTTGTGTGGTAAGAATAAGGAACCAGCACCTGCAATCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CAA 72 bp CTCATGGGGTTAAGAAAGGGAGACTCGCCGGGTGTGTaGGTACACACCTTTAATCCCAGCACTCGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: LMGLRKGDSPGV*VHTFNPSTREA
Trigger: TGCCTCCCGAGTGCTGGGATTAAAGGTGTGTACCAACACACCCGGCGAGTCTCCCTTTCTTAACCCCATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp TCTGCTTCCTCAGACAGAAGGGACTGTCATGCGTCTCCTGAGAGGACGGGGACGCGGCTAATTTCTGCATaGGTTTTATCGCCGTCTCTC +
Preference number: 4 (lower is better)
Translates to: SASSDRRDCHASPERTGTRLISA*VLSPSL
Trigger: GAGAGACGGCGATAAAACTCATGCAGAAATTAGCCG...CGTCCCCGTCCTCTCAGGAGACGCATGACAGTCCCTTCTGTCTGAGGAAGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
CDS-3UTR TCA 90 bp CAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCTCTGTCATGCGTCTCCTaGGAGGACGGGGACGTCTCA +
Preference number: 4 (lower is better)
Translates to: QAHITTRTQVIILLPQHPLSCVS*EDGDVS
Trigger: TGAGACGTCCCCGTCCTCTCAGGAGACGCATGACAG...AGGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp TCCTGCCTCCTCCACCCACCGAGTGCTGAAATGTGTGGCTGGTTCTACCTTGTCCACCTCACTGTCCAGTaGAAAGGTCCCATCATCCTT +
Preference number: 4 (lower is better)
Translates to: SCLLHPPSAEMCGWFYLVHLTVQ*KGPIIL
Trigger: AAGGATGATGGGACCTTTGCACTGGACAGTGAGGTG...GACAAGGTAGAACCAGCCACACATTTCAGCACTCGGTGGGTGGAGGAGGCAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp ACCTTTAATCCCAGCACTCGGGAGGCAGAGGCTGGCGGATTTCTGAGTTCGAGGAAAGCCCCAGCCAACTaGGTCACCAACAATCGTGAA +
Preference number: 4 (lower is better)
Translates to: TFNPSTREAEAGGFLSSRKAPAN*VTNNRE
Trigger: TTCACGATTGTTGGTGACGCAGTTGGCTGGGGCTTT...CCTCGAACTCAGAAATCCGCCAGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp TTGCCAAGTGCAATCTTGCCAGAGACTCTGAGTCTTACACAGGTAAGGACAGACACGGGGACGTCTCATTaGGCAGCTCCATCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: LPSAILPETLSLTQVRTDTGTSH*AAPSAS
Trigger: GGAGGCTGATGGAGCTGCTCAATGAGACGTCCCCGT...GTCTGTCCTTACCTGTGTAAGACTCAGAGTCTCTGGCAAGATTGCACTTGGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp ACCTTTAATCCCAGCACTCGGGAGGCAGAGGCTGGCGGATTTCTGAGTTCGAGGCTGTCAGAATCAGATTaGTCACGGTGCGGTAGTCTA +
Preference number: 4 (lower is better)
Translates to: TFNPSTREAEAGGFLSSRLSESD*SRCGSL
Trigger: TAGACTACCGCACCGTGAGCAATCTGATTCTGACAG...CCTCGAACTCAGAAATCCGCCAGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp CAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCTGCCTCTGTCCTCTCATaGAGGCCTTCACCTCACTGT +
Preference number: 4 (lower is better)
Translates to: QAHITTRTQVIILLPQHPASVLS*RPSPHC
Trigger: ACAGTGAGGTGAAGGCCTTCATGAGAGGACAGAGGC...AGGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp ATTGAGCAGCTCCATCAGCCTCCGCCTCCGACGGAAGTTCATTCTGAACTGGTACACCTCACTGTCCAGTaGAAAGGTCCCATCATCCTT +
Preference number: 4 (lower is better)
Translates to: IEQLHQPPPPTEVHSELVHLTVQ*KGPIIL
Trigger: AAGGATGATGGGACCTTTGCACTGGACAGTGAGGTG...TACCAGTTCAGAATGAACTTCCGTCGGAGGCGGAGGCTGATGGAGCTGCTCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
CDS-3UTR GCA 90 bp CCAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCGTGGCAAAGCTGCTCTaGCTCTTTCCTTGTTGTGGC +
Preference number: 4 (lower is better)
Translates to: PGSHYYQNSSDHPPASASVAKLL*LFPCCG
Trigger: GCCACAACAAGGAAAGAGGCAGAGCAGCTTTGCCAC...GGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CCACGGCACAGTGGTCTGTTTTATCTTTCACCTCAAGATGCAACTGAAACAGGCCGTGAATGTCTTCCTTaGGTACGGAGCCCCCGGAGT +
Preference number: 4 (lower is better)
Translates to: PRHSGLFYLSPQDATETGRECLP*VRSPRS
Trigger: ACTCCGGGGGCTCCGTACGCAAGGAAGACATTCACG...GCCTGTTTCAGTTGCATCTTGAGGTGAAAGATAAAACAGACCACTGTGCCGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp AGATCCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTTGCAACAAAGCAGTTTaGGTAGGTTTTGAGATGGTG +
Preference number: 4 (lower is better)
Translates to: RSSESKEGQAGWWWHPLSCNKAV*VGFEMV
Trigger: CACCATCTCAAAACCTACCCAAACTGCTTTGTTGCA...AGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp CTGCTTCCTCAGACAGAAGGGACTGTCATGCGTCTCCTGAGAGGACGGGGACGTTGCAACAAAGCAGTTTaGGTAGGTTTTGAGATGGTG +
Preference number: 4 (lower is better)
Translates to: LLPQTEGTVMRLLRGRGRCNKAV*VGFEMV
Trigger: CACCATCTCAAAACCTACCCAAACTGCTTTGTTGCA...ACGTCCCCGTCCTCTCAGGAGACGCATGACAGTCCCTTCTGTCTGAGGAAGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
CDS-3UTR GCA 90 bp AACCAACCAGTCCAGGAATTCGGATGCCATGAAGGTCCGCTCATACTTCACCCCTCCTCAGAGATAGAATaGCTGAGAACCACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: NQPVQEFGCHEGPLILHPSSEIE*LRTTRK
Trigger: CTTCCTGGTGGTTCTCAGGCATTCTATCTCTGAGGA...GGGGTGAAGTATGAGCGGACCTTCATGGCATCCGAATTCCTGGACTGGTTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
CDS-3UTR GCA 90 bp GATCCCATGGTCCATAAGCCGGTGGCAAAGCTGCTCTGCCTCTTTCCTTGTTGTCGGTCGGCTAATTTCTaGATGAGTTTTATCGCCGTC +
Preference number: 4 (lower is better)
Translates to: DPMVHKPVAKLLCLFPCCRSANF*MSFIAV
Trigger: GACGGCGATAAAACTCATGCAGAAATTAGCCGACCG...ACAACAAGGAAAGAGGCAGAGCAGCTTTGCCACCGGCTTATGGACCATGGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
CDS-3UTR GCA 90 bp GCTTGCCTTGAATTTGCAGCACTTCTGCCTTGCCCTCCTGAATGCTGGGATTATAGCCGGTGGCAAAGCTaGTCTGCCTCTTTCCTTGTT +
Preference number: 4 (lower is better)
Translates to: ACLEFAALLPCPPECWDYSRWQS*SASFLV
Trigger: AACAAGGAAAGAGGCAGAGCAGCTTTGCCACCGGCT...ATAATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAGGCAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCTAGCCGGTGGCAAAGCTaGTCTGCCTCTTTCCTTGTT +
Preference number: 4 (lower is better)
Translates to: QAHITTRTQVIILLPQHPSRWQS*SASFLV
Trigger: AACAAGGAAAGAGGCAGAGCAGCTTTGCCACCGGCT...AGGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp CAAGATGGAGCTTGTAGTGGCAAGCAGATCCCTAAATTGGCATCACATCCCATGTGGTCCATAAGCCGGTaGCAAAGCTGCTCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: QDGACSGKQIPKLASHPMWSISR*QSCSAS
Trigger: AGAGGCAGAGCAGCTTTGCCACCGGCTTATGGACCA...CATGGGATGTGATGCCAATTTAGGGATCTGCTTGCCACTACAAGCTCCATCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp CAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCTTGCTGGATGATCCCATaGTCCATAAGCCGGTGGCAA +
Preference number: 4 (lower is better)
Translates to: QAHITTRTQVIILLPQHPCWMIP*SISRWQ
Trigger: TTGCCACCGGCTTATGGACCATGGGATCATCCAGCA...AGGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp GGTGCTGGGATTACAGGAACATGCTACGATATCTGGTTCAAAGGAAGTCTTTTCCCGCAGCCTGCAGCCTaGGGTTATTACACTCAGAGG +
Preference number: 4 (lower is better)
Translates to: GAGITGTCYDIWFKGSLFPQPAA*GYYTQR
Trigger: CCTCTGAGTGTAATAACCTCAGGCTGCAGGCTGCGG...GAAAAGACTTCCTTTGAACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023056.8
CDS-3UTR TCA 90 bp CTTGAATTTGCAGCACTTCTGCCTTGCCCTCCTGAATGCTGGGATTATAGACTTGCCTCTGTCCTCTCATaGAGGCCTTCACCTCACTGT +
Preference number: 4 (lower is better)
Translates to: LEFAALLPCPPECWDYRLASVLS*RPSPHC
Trigger: ACAGTGAGGTGAAGGCCTTCATGAGAGGACAGAGGC...AAGTCTATAATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp ATGTGGACACTTGCCAAGTGCAATCTTGCCAGAGACTCTGAGTCTTACACAGGTGTGGCTTCACCTTCCTaGACCAACCAGTCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: MWTLAKCNLARDSESYTGVASPS*TNQSRN
Trigger: ATTCCTGGACTGGTTGGTTCAGGAAGGTGAAGCCAC...ACCTGTGTAAGACTCAGAGTCTCTGGCAAGATTGCACTTGGCAAGTGTCCACAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp CCCAGATTGCAGGTGCTGGTTCCTTATTCTTACCACACAAGCACAGTAGGCATGAGAGTTCCTCAGAAGTaGCAGGTCTCTTCAGCACAG +
Preference number: 4 (lower is better)
Translates to: PRLQVLVPYSYHTSTVGMRVPQK*QVSSAQ
Trigger: CTGTGCTGAAGAGACCTGTCACTTCTGAGGAACTCT...CATGCCTACTGTGCTTGTGTGGTAAGAATAAGGAACCAGCACCTGCAATCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp CAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCTACAGAGACGACAAACTaGCAGACCTTCATCCCTGCA +
Preference number: 4 (lower is better)
Translates to: QAHITTRTQVIILLPQHPTETTN*QTFIPA
Trigger: TGCAGGGATGAAGGTCTGTCAGTTTGTCGTCTCTGT...AGGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CCAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCTCCTCAGAGATAGAATaGCTGAGAACCACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: PGSHYYQNSSDHPPASASSSEIE*LRTTRK
Trigger: CTTCCTGGTGGTTCTCAGGCATTCTATCTCTGAGGA...GGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023056.8
CDS-3UTR GCA 90 bp GCTTGCCTTGAATTTGCAGCACTTCTGCCTTGCCCTCCTGAATGCTGGGATTATCACCTCACTGTCCAGTaGAAAGGTCCCATCATCCTT +
Preference number: 4 (lower is better)
Translates to: ACLEFAALLPCPPECWDYHLTVQ*KGPIIL
Trigger: AAGGATGATGGGACCTTTGCACTGGACAGTGAGGTG...ATAATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAGGCAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCTCTGTCCACAAACGGGTaGTTGTTAGACACATGCTGG +
Preference number: 4 (lower is better)
Translates to: QAHITTRTQVIILLPQHPLSTNG*LLDTCW
Trigger: CCAGCATGTGTCTAACAAGCACCCGTTTGTGGACAG...AGGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CTCATTTGGCACTCTGAGGAATATCCTCTACATACCAATACCCCAATGCACTTCACAGACCTTCATCCCTaGAGCGGCTGCAGGTCCACT +
Preference number: 4 (lower is better)
Translates to: LIWHSEEYPLHTNTPMHFTDLHP*SGCRST
Trigger: AGTGGACCTGCAGCCGCTGCAGGGATGAAGGTCTGT...GAAGTGCATTGGGGTATTGGTATGTAGAGGATATTCCTCAGAGTGCCAAATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp CTTGAATTTGCAGCACTTCTGCCTTGCCCTCCTGAATGCTGGGATTATAGACTTTGGTCCATAAGCCGGTaGCAAAGCTGCTCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: LEFAALLPCPPECWDYRLWSISR*QSCSAS
Trigger: AGAGGCAGAGCAGCTTTGCCACCGGCTTATGGACCA...AAGTCTATAATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp ATGTGGACACTTGCCAAGTGCAATCTTGCCAGAGACTCTGAGTCTTACACAGGTTGCTGGATGATCCCATaGTCCATAAGCCGGTGGCAA +
Preference number: 4 (lower is better)
Translates to: MWTLAKCNLARDSESYTGCWMIP*SISRWQ
Trigger: TTGCCACCGGCTTATGGACCATGGGATCATCCAGCA...ACCTGTGTAAGACTCAGAGTCTCTGGCAAGATTGCACTTGGCAAGTGTCCACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTTCTTCAGCACAGATTTaGGGTTGCAGAGCACAGGGG +
Preference number: 4 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLSSAQI*GCRAQG
Trigger: CCCCTGTGCTCTGCAACCCCAAATCTGTGCTGAAGA...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp CCCAGATTGCAGGTGCTGGTTCCTTATTCTTACCACACAAGCACAGTAGGCATGTCCACAGCCTGGATGTaGCATGGTTTACTTCCTCGT +
Preference number: 4 (lower is better)
Translates to: PRLQVLVPYSYHTSTVGMSTAWM*HGLLPR
Trigger: ACGAGGAAGTAAACCATGCCACATCCAGGCTGTGGA...CATGCCTACTGTGCTTGTGTGGTAAGAATAAGGAACCAGCACCTGCAATCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp CTTGAATTTGCAGCACTTCTGCCTTGCCCTCCTGAATGCTGGGATTATAGACTTGTGGCTTCACCTTCCTaGACCAACCAGTCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: LEFAALLPCPPECWDYRLVASPS*TNQSRN
Trigger: ATTCCTGGACTGGTTGGTTCAGGAAGGTGAAGCCAC...AAGTCTATAATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp ATGTGGACACTTGCCAAGTGCAATCTTGCCAGAGACTCTGAGTCTTACACAGGTACAGAGACGACAAACTaGCAGACCTTCATCCCTGCA +
Preference number: 4 (lower is better)
Translates to: MWTLAKCNLARDSESYTGTETTN*QTFIPA
Trigger: TGCAGGGATGAAGGTCTGTCAGTTTGTCGTCTCTGT...ACCTGTGTAAGACTCAGAGTCTCTGGCAAGATTGCACTTGGCAAGTGTCCACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CAAGATGGAGCTTGTAGTGGCAAGCAGATCCCTAAATTGGCATCACATCCCATGGTCCAGGAATTCGGATaGCATGAAGGTCCGCTCATA +
Preference number: 4 (lower is better)
Translates to: QDGACSGKQIPKLASHPMVQEFG*HEGPLI
Trigger: TATGAGCGGACCTTCATGGCATCCGAATTCCTGGAC...CATGGGATGTGATGCCAATTTAGGGATCTGCTTGCCACTACAAGCTCCATCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp GGCACTCTGAGGAATATCCTCTACATACCAATACCCCAATGCACTTCCTTGTCTGTGGCAAAGCTGCTCTaGCTCTTTCCTTGTTGTGGC +
Preference number: 4 (lower is better)
Translates to: GTLRNILYIPIPQCTSLSVAKLL*LFPCCG
Trigger: GCCACAACAAGGAAAGAGGCAGAGCAGCTTTGCCAC...AGACAAGGAAGTGCATTGGGGTATTGGTATGTAGAGGATATTCCTCAGAGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp GATGGAGCTTGTAGTGGCAAGCAGATCCCTAAATTGGCATCACATCCCATGACACTGTCCACAAACGGGTaGTTGTTAGACACATGCTGG +
Preference number: 4 (lower is better)
Translates to: DGACSGKQIPKLASHPMTLSTNG*LLDTCW
Trigger: CCAGCATGTGTCTAACAAGCACCCGTTTGTGGACAG...TGTCATGGGATGTGATGCCAATTTAGGGATCTGCTTGCCACTACAAGCTCCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp GCTGTGTTTTGGTTTTTAAAGATATGTAACCTGGTTCTTCCACATTCAAACAGCCATCCCTGCAGCGGCTaGAGGTCCACTGGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: AVFWFLKICNLVLPHSNSHPCSG*RSTGVH
Trigger: GTGGACCCCAGTGGACCTGCAGCCGCTGCAGGGATG...GCTGTTTGAATGTGGAAGAACCAGGTTACATATCTTTAAAAACCAAAACACAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp TTTGGTTCTGCAGTGAAGAAATATGCATCATACCTGAAGTTCAGGTGGCAGGAAACAGACCTTCATCCCTaGAGCGGCTGCAGGTCCACT +
Preference number: 4 (lower is better)
Translates to: FGSAVKKYASYLKFRWQETDLHP*SGCRST
Trigger: AGTGGACCTGCAGCCGCTGCAGGGATGAAGGTCTGT...TTCCTGCCACCTGAACTTCAGGTATGATGCATATTTCTTCACTGCAGAACCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp GATGGAGCTTGTAGTGGCAAGCAGATCCCTAAATTGGCATCACATCCCATGACATCCACAGCCTGGATGTaGCATGGTTTACTTCCTCGT +
Preference number: 4 (lower is better)
Translates to: DGACSGKQIPKLASHPMTSTAWM*HGLLPR
Trigger: ACGAGGAAGTAAACCATGCCACATCCAGGCTGTGGA...TGTCATGGGATGTGATGCCAATTTAGGGATCTGCTTGCCACTACAAGCTCCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CAA 72 bp ATGTGCACTTGTGTGGAAAGATCCCGAGTGTGGTTTTaGAGACAGGCACTCACACTGTTAGTAGACGCTTGC +
Preference number: 4 (lower is better)
Translates to: MCTCVERSRVWF*RQALTLLVDAC
Trigger: GCAAGCGTCTACTAACAGTGTGAGTGCCTGTCTCAAAAACCACACTCGGGATCTTTCCACACAAGTGCACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp CTGTCCACAAACGGGTGCTTGTTAGACACATGCTGGATGATCCCATGGTCCATAAGTTTGGGTAGGTTTTaGGATGGTGCCGTCTATCTT +
Preference number: 4 (lower is better)
Translates to: LSTNGCLLDTCWMIPWSISLGRF*DGAVYL
Trigger: AAGATAGACGGCACCATCTCAAAACCTACCCAAACT...TATGGACCATGGGATCATCCAGCATGTGTCTAACAAGCACCCGTTTGTGGACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
CDS-3UTR TCA 90 bp ATGTGGACACTTGCCAAGTGCAATCTTGCCAGAGACTCTGAGTCTTACACAGGTCGGCTAATTTCTGCATaGGTTTTATCGCCGTCTCTC +
Preference number: 4 (lower is better)
Translates to: MWTLAKCNLARDSESYTGRLISA*VLSPSL
Trigger: GAGAGACGGCGATAAAACTCATGCAGAAATTAGCCG...ACCTGTGTAAGACTCAGAGTCTCTGGCAAGATTGCACTTGGCAAGTGTCCACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp CTTGAATTTGCAGCACTTCTGCCTTGCCCTCCTGAATGCTGGGATTATAGACTTGGAATTCGGATGCCATaGAGGTCCGCTCATACTTCA +
Preference number: 4 (lower is better)
Translates to: LEFAALLPCPPECWDYRLGIRMP*RSAHTS
Trigger: TGAAGTATGAGCGGACCTTCATGGCATCCGAATTCC...AAGTCTATAATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTCGGTCGGCTAATTTCTaGATGAGTTTTATCGCCGTC +
Preference number: 4 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLRSANF*MSFIAV
Trigger: GACGGCGATAAAACTCATGCAGAAATTAGCCGACCG...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CTTGAATTTGCAGCACTTCTGCCTTGCCCTCCTGAATGCTGGGATTATAGACTTGTCCAGGAATTCGGATaGCATGAAGGTCCGCTCATA +
Preference number: 4 (lower is better)
Translates to: LEFAALLPCPPECWDYRLVQEFG*HEGPLI
Trigger: TATGAGCGGACCTTCATGGCATCCGAATTCCTGGAC...AAGTCTATAATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CATGTTGCTAATTTGGTTTCACAACAACTTCCCGAAAACATGAAGAACAATGATCATCCCTGCAGCGGCTaGAGGTCCACTGGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: HVANLVSQQLPENMKNNDHPCSG*RSTGVH
Trigger: GTGGACCCCAGTGGACCTGCAGCCGCTGCAGGGATG...ATCATTGTTCTTCATGTTTTCGGGAAGTTGTTGTGAAACCAAATTAGCAACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CCACTAAAGCCAAGTCCCTTAAATGTGGACACTTGCCAAGTGCAATCTTGCCAGTCAGATTGCTCACGGTaGGGTAGTCTACATTCAGCA +
Preference number: 4 (lower is better)
Translates to: PLKPSPLNVDTCQVQSCQSDCSR*GSLHSA
Trigger: TGCTGAATGTAGACTACCGCACCGTGAGCAATCTGA...CTGGCAAGATTGCACTTGGCAAGTGTCCACATTTAAGGGACTTGGCTTTAGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp AGAAGAATCTACTGTGACAGGGATGGAAGGCAAGAGACTCAAGGAATTCGGCCATCAGATTGCTCACGGTaGGGTAGTCTACATTCAGCA +
Preference number: 4 (lower is better)
Translates to: RRIYCDRDGRQETQGIRPSDCSR*GSLHSA
Trigger: TGCTGAATGTAGACTACCGCACCGTGAGCAATCTGA...TGGCCGAATTCCTTGAGTCTCTTGCCTTCCATCCCTGTCACAGTAGATTCTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp GGTGCTGGGATTACAGGAACATGCTACGATATCTGGTTCAAAGGAAGTCTTTTCGATTTCCGACTGTCGTaGCTCTGCTTCCTCAGACAG +
Preference number: 4 (lower is better)
Translates to: GAGITGTCYDIWFKGSLFDFRLS*LCFLRQ
Trigger: CTGTCTGAGGAAGCAGAGCCACGACAGTCGGAAATC...GAAAAGACTTCCTTTGAACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp ATCACCCACGGCACAGTGGTCTGTTTTATCTTTCACCTCAAGATGCAACTGAAACTGGGGTCCACAGCCTaGATGTGGCATGGTTTACTT +
Preference number: 4 (lower is better)
Translates to: ITHGTVVCFIFHLKMQLKLGSTA*MWHGLL
Trigger: AAGTAAACCATGCCACATCCAGGCTGTGGACCCCAG...TTTCAGTTGCATCTTGAGGTGAAAGATAAAACAGACCACTGTGCCGTGGGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp CCACTAAAGCCAAGTCCCTTAAATGTGGACACTTGCCAAGTGCAATCTTGCCAGAGTTTGGGTAGGTTTTaGGATGGTGCCGTCTATCTT +
Preference number: 4 (lower is better)
Translates to: PLKPSPLNVDTCQVQSCQSLGRF*DGAVYL
Trigger: AAGATAGACGGCACCATCTCAAAACCTACCCAAACT...CTGGCAAGATTGCACTTGGCAAGTGTCCACATTTAAGGGACTTGGCTTTAGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp CCACTAAAGCCAAGTCCCTTAAATGTGGACACTTGCCAAGTGCAATCTTGCCAGCCTCCTTATGTTCAATaGGCCAGTCAATCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: PLKPSPLNVDTCQVQSCQPPYVQ*ASQSAL
Trigger: AAGAGCTGATTGACTGGCTCATTGAACATAAGGAGG...CTGGCAAGATTGCACTTGGCAAGTGTCCACATTTAAGGGACTTGGCTTTAGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp GCTGTGTTTTGGTTTTTAAAGATATGTAACCTGGTTCTTCCACATTCAAACAGCCTGTCATGCGTCTCCTaGGAGGACGGGGACGTCTCA +
Preference number: 4 (lower is better)
Translates to: AVFWFLKICNLVLPHSNSLSCVS*EDGDVS
Trigger: TGAGACGTCCCCGTCCTCTCAGGAGACGCATGACAG...GCTGTTTGAATGTGGAAGAACCAGGTTACATATCTTTAAAAACCAAAACACAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp GGTGCTGGGATTACAGGAACATGCTACGATATCTGGTTCAAAGGAAGTCTTTTCAGCCTGGATGTGGCATaGTTTACTTCCTCGTACCAC +
Preference number: 4 (lower is better)
Translates to: GAGITGTCYDIWFKGSLFSLDVA*FTSSYH
Trigger: GTGGTACGAGGAAGTAAACCATGCCACATCCAGGCT...GAAAAGACTTCCTTTGAACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CAA 72 bp TGTCCCACTAAAGCCAAGTCCCTTAAATGTGGACACTaGCCAAGTGCAATCTTGCCAGAGACTCTGAGTCTT +
Preference number: 4 (lower is better)
Translates to: CPTKAKSLKCGH*PSAILPETLSL
Trigger: AAGACTCAGAGTCTCTGGCAAGATTGCACTTGGCAAGTGTCCACATTTAAGGGACTTGGCTTTAGTGGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CTGTCCACAAACGGGTGCTTGTTAGACACATGCTGGATGATCCCATGGTCCATAGTCAATCAGCTCTTTTaGAACAAAGCAGTTTGGGTA +
Preference number: 4 (lower is better)
Translates to: LSTNGCLLDTCWMIPWSIVNQLF*NKAVWV
Trigger: TACCCAAACTGCTTTGTTGCAAAAGAGCTGATTGAC...TATGGACCATGGGATCATCCAGCATGTGTCTAACAAGCACCCGTTTGTGGACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
CDS-3UTR CCA 90 bp CTCCAGCACGAATCTTTGTGCTGTGAGCCACCCTGCCCAGTTGTAATTAAACTTTGCAACAAAGCAGTTTaGGTAGGTTTTGAGATGGTG +
Preference number: 4 (lower is better)
Translates to: LQHESLCCEPPCPVVIKLCNKAV*VGFEMV
Trigger: CACCATCTCAAAACCTACCCAAACTGCTTTGTTGCA...AAGTTTAATTACAACTGGGCAGGGTGGCTCACAGCACAAAGATTCGTGCTGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
3UTR CAA 72 bp AGCCCAAGCAGCACTGACATTTTAGGACCCATGGACTaGGAAGGTTTTGTTATAAACCAGCCTTCAGGTACA +
Preference number: 4 (lower is better)
Translates to: SPSSTDILGPMD*EGFVINQPSGT
Trigger: TGTACCTGAAGGCTGGTTTATAACAAAACCTTCCAAGTCCATGGGTCCTAAAATGTCAGTGCTGCTTGGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp TTTGGTTCTGCAGTGAAGAAATATGCATCATACCTGAAGTTCAGGTGGCAGGAACGGCTAATTTCTGCATaGGTTTTATCGCCGTCTCTC +
Preference number: 4 (lower is better)
Translates to: FGSAVKKYASYLKFRWQERLISA*VLSPSL
Trigger: GAGAGACGGCGATAAAACTCATGCAGAAATTAGCCG...TTCCTGCCACCTGAACTTCAGGTATGATGCATATTTCTTCACTGCAGAACCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp CTTGAATTTGCAGCACTTCTGCCTTGCCCTCCTGAATGCTGGGATTATAGACTTAGAGTTTTACATCCTTaGATTCCTTGTGCTCATCAC +
Preference number: 4 (lower is better)
Translates to: LEFAALLPCPPECWDYRLRVLHP*IPCAHH
Trigger: GTGATGAGCACAAGGAATTCAAGGATGTAAAACTCT...AAGTCTATAATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp GGTGCTGGGATTACAGGAACATGCTACGATATCTGGTTCAAAGGAAGTCTTTTCCATGACAATTGTCCTTaGGCCTGTCAGAATCAGATT +
Preference number: 4 (lower is better)
Translates to: GAGITGTCYDIWFKGSLFHDNCP*ACQNQI
Trigger: AATCTGATTCTGACAGGCCCAAGGACAATTGTCATG...GAAAAGACTTCCTTTGAACCAGATATCGTAGCATGTTCCTGTAATCCCAGCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp GCTGTGTTTTGGTTTTTAAAGATATGTAACCTGGTTCTTCCACATTCAAACAGCAAAGCCCCAGCCAACTaGGTCACCAACAATCGTGAA +
Preference number: 4 (lower is better)
Translates to: AVFWFLKICNLVLPHSNSKAPAN*VTNNRE
Trigger: TTCACGATTGTTGGTGACGCAGTTGGCTGGGGCTTT...GCTGTTTGAATGTGGAAGAACCAGGTTACATATCTTTAAAAACCAAAACACAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp TTCCTGGCCAACTTGGAATACATACAGAATAAGACCTTGGTATTTGAAACAAATCTAGGACTTCAGCCATaGGTTCCAGCTCTCTCTGCT +
Preference number: 4 (lower is better)
Translates to: FLANLEYIQNKTLVFETNLGLQP*VPALSA
Trigger: AGCAGAGAGAGCTGGAACGCATGGCTGAAGTCCTAG...ATTTGTTTCAAATACCAAGGTCTTATTCTGTATGTATTCCAAGTTGGCCAGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp TTTGGTTCTGCAGTGAAGAAATATGCATCATACCTGAAGTTCAGGTGGCAGGAATTGTTAGACACATGCTaGATGATCCCATGGTCCATA +
Preference number: 4 (lower is better)
Translates to: FGSAVKKYASYLKFRWQELLDTC*MIPWSI
Trigger: TATGGACCATGGGATCATCCAGCATGTGTCTAACAA...TTCCTGCCACCTGAACTTCAGGTATGATGCATATTTCTTCACTGCAGAACCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp CTTCTAAAAATGGCATTTTTCCATGTTGCTAATTTGGTTTCACAACAACTTCCCTCTTCAGCACAGATTTaGGGTTGCAGAGCACAGGGG +
Preference number: 4 (lower is better)
Translates to: LLKMAFFHVANLVSQQLPSSAQI*GCRAQG
Trigger: CCCCTGTGCTCTGCAACCCCAAATCTGTGCTGAAGA...GGGAAGTTGTTGTGAAACCAAATTAGCAACATGGAAAAATGCCATTTTTAGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp CATGTTGCTAATTTGGTTTCACAACAACTTCCCGAAAACATGAAGAACAATGATCTGGGGTCCACAGCCTaGATGTGGCATGGTTTACTT +
Preference number: 4 (lower is better)
Translates to: HVANLVSQQLPENMKNNDLGSTA*MWHGLL
Trigger: AAGTAAACCATGCCACATCCAGGCTGTGGACCCCAG...ATCATTGTTCTTCATGTTTTCGGGAAGTTGTTGTGAAACCAAATTAGCAACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CAA 72 bp ACTGCTTCTAAGGTGTTGAATGCTTTAAGGACATTCTaGGAAATTTGTGTTAGCTGGCCACATTTCTGGGGA +
Preference number: 4 (lower is better)
Translates to: TASKVLNALRTF*EICVSWPHFWG
Trigger: TCCCCAGAAATGTGGCCAGCTAACACAAATTTCCAAGAATGTCCTTAAAGCATTCAACACCTTAGAAGCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CAA 72 bp TTCATAGCAGCCAGAGTCAGTACCAAGGGTTCAAAATaGGCCTTGAAGTTGACTATCTCCACAATACATTTG +
Preference number: 4 (lower is better)
Translates to: FIAARVSTKGSK*ALKLTISTIHL
Trigger: CAAATGTATTGTGGAGATAGTCAACTTCAAGGCCAATTTTGAACCCTTGGTACTGACTCTGGCTGCTATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp GCTGTGTTTTGGTTTTTAAAGATATGTAACCTGGTTCTTCCACATTCAAACAGCCGGTCGGCTAATTTCTaGATGAGTTTTATCGCCGTC +
Preference number: 4 (lower is better)
Translates to: AVFWFLKICNLVLPHSNSRSANF*MSFIAV
Trigger: GACGGCGATAAAACTCATGCAGAAATTAGCCGACCG...GCTGTTTGAATGTGGAAGAACCAGGTTACATATCTTTAAAAACCAAAACACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp GCTGTGTTTTGGTTTTTAAAGATATGTAACCTGGTTCTTCCACATTCAAACAGCCTGTCAGAATCAGATTaGTCACGGTGCGGTAGTCTA +
Preference number: 4 (lower is better)
Translates to: AVFWFLKICNLVLPHSNSLSESD*SRCGSL
Trigger: TAGACTACCGCACCGTGAGCAATCTGATTCTGACAG...GCTGTTTGAATGTGGAAGAACCAGGTTACATATCTTTAAAAACCAAAACACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp CATGTTGCTAATTTGGTTTCACAACAACTTCCCGAAAACATGAAGAACAATGATAGCCTGGATGTGGCATaGTTTACTTCCTCGTACCAC +
Preference number: 4 (lower is better)
Translates to: HVANLVSQQLPENMKNNDSLDVA*FTSSYH
Trigger: GTGGTACGAGGAAGTAAACCATGCCACATCCAGGCT...ATCATTGTTCTTCATGTTTTCGGGAAGTTGTTGTGAAACCAAATTAGCAACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CAA 72 bp AGTATATTTCACGTGAACACCAAAAAGCTACTGGAGTaGACTTATAAGGCAAAACCACACAGATCCAGTGAG +
Preference number: 4 (lower is better)
Translates to: SIFHVNTKKLLE*TYKAKPHRSSE
Trigger: CTCACTGGATCTGTGTGGTTTTGCCTTATAAGTCAACTCCAGTAGCTTTTTGGTGTTCACGTGAAATATACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CAA 72 bp CAATACTATATGCGATCTTTGACGGCAAACTTCATTTaGGCATACAGCTCATTTGTCCTTTTGGTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: QYYMRSLTANFI*AYSSFVLLVLQ
Trigger: CTGCAGAACCAAAAGGACAAATGAGCTGTATGCCAAAATGAAGTTTGCCGTCAAAGATCGCATATAGTATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR CCA 90 bp GCTGTGTTTTGGTTTTTAAAGATATGTAACCTGGTTCTTCCACATTCAAACAGCTTGTTAGACACATGCTaGATGATCCCATGGTCCATA +
Preference number: 4 (lower is better)
Translates to: AVFWFLKICNLVLPHSNSLLDTC*MIPWSI
Trigger: TATGGACCATGGGATCATCCAGCATGTGTCTAACAA...GCTGTTTGAATGTGGAAGAACCAGGTTACATATCTTTAAAAACCAAAACACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR TCA 90 bp AGGAAGAAAGTTTACTTTGTGATGACTGCTTCTAAGGTGTTGAATGCTTTAAGGAGAGTTTTACATCCTTaGATTCCTTGTGCTCATCAC +
Preference number: 4 (lower is better)
Translates to: RKKVYFVMTASKVLNALRRVLHP*IPCAHH
Trigger: GTGATGAGCACAAGGAATTCAAGGATGTAAAACTCT...CCTTAAAGCATTCAACACCTTAGAAGCAGTCATCACAAAGTAAACTTTCTTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
3UTR CAA 72 bp AGAGTCAGTACCAAGGGTTCAAAATTGGCCTTGAAGTaGACTATCTCCACAATACATTTGAAAGGAAAGATT +
Preference number: 4 (lower is better)
Translates to: RVSTKGSKLALK*TISTIHLKGKI
Trigger: AATCTTTCCTTTCAAATGTATTGTGGAGATAGTCAACTTCAAGGCCAATTTTGAACCCTTGGTACTGACTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp CTACGATATCTGGTTCAAAGGAAGTCTTTTCTAGATCAAGAAAATATTCGTGAGGTCAATCAGCTCTTTTaGAACAAAGCAGTTTGGGTA +
Preference number: 4 (lower is better)
Translates to: LRYLVQRKSFLDQENIREVNQLF*NKAVWV
Trigger: TACCCAAACTGCTTTGTTGCAAAAGAGCTGATTGAC...CTCACGAATATTTTCTTGATCTAGAAAAGACTTCCTTTGAACCAGATATCGTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR GCA 90 bp TTCCTGGCCAACTTGGAATACATACAGAATAAGACCTTGGTATTTGAAACAAATGTCAATCAGCTCTTTTaGAACAAAGCAGTTTGGGTA +
Preference number: 4 (lower is better)
Translates to: FLANLEYIQNKTLVFETNVNQLF*NKAVWV
Trigger: TACCCAAACTGCTTTGTTGCAAAAGAGCTGATTGAC...ATTTGTTTCAAATACCAAGGTCTTATTCTGTATGTATTCCAAGTTGGCCAGGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS GCA 90 bp TCTCCCGTAACTAGGACTTCAGCCATGCGTTCCAGCTCTCTCTGCTaGACCCCGCCGCTCCCGCCGGCGTTGCTGTCGCTGCTACCACTG +
Preference number: 5 (lower is better)
Translates to: SPVTRTSAMRSSSLC*TPPLPPALLSLLPL
Trigger: CAGTGGTAGCAGCGACAGCAACGCCGGCGGGAGCGGCGGGGTGCAGCAGAGAGAGCTGGAACGCATGGCTGAAGTCCTAGTTACGGGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS GCA 90 bp TGCTCTCCCGTAACTAGGACTTCAGCCATGCGTTCCAGCTCTCTCTaGTGCACCCCGCCGCTCCCGCCGGCGTTGCTGTCGCTGCTACCA +
Preference number: 5 (lower is better)
Translates to: CSPVTRTSAMRSSSL*CTPPLPPALLSLLP
Trigger: TGGTAGCAGCGACAGCAACGCCGGCGGGAGCGGCGGGGTGCAGCAGAGAGAGCTGGAACGCATGGCTGAAGTCCTAGTTACGGGAGAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS CCA 90 bp TGCAGCGGCTGCAGGTCCACTGGGGTCCACAGCCTGGATGTGGCATaGTTTACTTCCTCGTACCACAAAGCCCCAGCCAACTGCGTCACC +
Preference number: 5 (lower is better)
Translates to: CSGCRSTGVHSLDVA*FTSSYHKAPANCVT
Trigger: GGTGACGCAGTTGGCTGGGGCTTTGTGGTACGAGGAAGTAAACCATGCCACATCCAGGCTGTGGACCCCAGTGGACCTGCAGCCGCTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS CCA 90 bp ATCCCTGCAGCGGCTGCAGGTCCACTGGGGTCCACAGCCTGGATGTaGCATGGTTTACTTCCTCGTACCACAAAGCCCCAGCCAACTGCG +
Preference number: 5 (lower is better)
Translates to: IPAAAAGPLGSTAWM*HGLLPRTTKPQPTA
Trigger: CGCAGTTGGCTGGGGCTTTGTGGTACGAGGAAGTAAACCATGCCACATCCAGGCTGTGGACCCCAGTGGACCTGCAGCCGCTGCAGGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS TCA 90 bp TCGTGGCTCTGCTTCCTCAGACAGAAGGGACTGTCATGCGTCTCCTaGGAGGACGGGGACGTCTCATTGAGCAGCTCCATCAGCCTCCGC +
Preference number: 5 (lower is better)
Translates to: SWLCFLRQKGLSCVS*EDGDVSLSSSISLR
Trigger: GCGGAGGCTGATGGAGCTGCTCAATGAGACGTCCCCGTCCTCTCAGGAGACGCATGACAGTCCCTTCTGTCTGAGGAAGCAGAGCCACGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS TCA 90 bp TCTTCCTTGCGTACGGAGCCCCCGGAGTCAAGAGTTCCTCAGAAGTaGCAGGTCTCTTCAGCACAGATTTGGGGTTGCAGAGCACAGGGG +
Preference number: 5 (lower is better)
Translates to: SSLRTEPPESRVPQK*QVSSAQIWGCRAQG
Trigger: CCCCTGTGCTCTGCAACCCCAAATCTGTGCTGAAGAGACCTGTCACTTCTGAGGAACTCTTGACTCCGGGGGCTCCGTACGCAAGGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS-3UTR CAA 90 bp GGCAAACTCCCCAGGTCCCTGCAGTTCTCTCATCAGGTCCTACCACTTCTTCGTACGGCAGACACGATCTaGATCTCCTTGCTGGGGCTG +
Preference number: 5 (lower is better)
Translates to: GKLPRSLQFSHQVLPLLRTADTI*ISLLGL
Trigger: CAGCCCCAGCAAGGAGATCAAGATCGTGTCTGCCGT...ACGAAGAAGTGGTAGGACCTGATGAGAGAACTGCAGGGACCTGGGGAGTTTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp CCAGTGAGAGCAAAGAGGGGCAGGCGGGTTGGTGGTGGCATCCCTTGTCTATTCACGATCTTGATCTCCTaGCTGGGGCTGACTGACATA +
Preference number: 5 (lower is better)
Translates to: PVRAKRGRRVGGGIPCLFTILIS*LGLTDI
Trigger: TATGTCAGTCAGCCCCAGCAAGGAGATCAAGATCGT...GAATAGACAAGGGATGCCACCACCAACCCGCCTGCCCCTCTTTGCTCTCACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp CCACTAAAGCCAAGTCCCTTAAATGTGGACACTTGCCAAGTGCAATCTTGCCAGGACGGGGACGTCTCATaGAGCAGCTCCATCAGCCTC +
Preference number: 5 (lower is better)
Translates to: PLKPSPLNVDTCQVQSCQDGDVS*SSSISL
Trigger: GAGGCTGATGGAGCTGCTCAATGAGACGTCCCCGTC...CTGGCAAGATTGCACTTGGCAAGTGTCCACATTTAAGGGACTTGGCTTTAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp CCACGGCACAGTGGTCTGTTTTATCTTTCACCTCAAGATGCAACTGAAACAGGCGACGGGGACGTCTCATaGAGCAGCTCCATCAGCCTC +
Preference number: 5 (lower is better)
Translates to: PRHSGLFYLSPQDATETGDGDVS*SSSISL
Trigger: GAGGCTGATGGAGCTGCTCAATGAGACGTCCCCGTC...GCCTGTTTCAGTTGCATCTTGAGGTGAAAGATAAAACAGACCACTGTGCCGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp GAAGGGACTGTCATGCGTCTCCTGAGAGGACGGGGACGTCTCATTGAGCAGCTCAGTCAATCAGCTCTTTaGCAACAAAGCAGTTTGGGT +
Preference number: 5 (lower is better)
Translates to: EGTVMRLLRGRGRLIEQLSQSAL*QQSSLG
Trigger: ACCCAAACTGCTTTGTTGCAAAAGAGCTGATTGACT...GAGCTGCTCAATGAGACGTCCCCGTCCTCTCAGGAGACGCATGACAGTCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226687.2
CDS-3UTR CAA 90 bp GATGGAGCTTGTAGTGGCAAGCAGATCCCTAAATTGGCATCACATCCCATGACAACGGCAGACACGATCTaGATCTCCTTGCTGGGGCTG +
Preference number: 5 (lower is better)
Translates to: DGACSGKQIPKLASHPMTTADTI*ISLLGL
Trigger: CAGCCCCAGCAAGGAGATCAAGATCGTGTCTGCCGT...TGTCATGGGATGTGATGCCAATTTAGGGATCTGCTTGCCACTACAAGCTCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp GCTTGCCTTGAATTTGCAGCACTTCTGCCTTGCCCTCCTGAATGCTGGGATTATGCTCTGCCTCTTTCCTaGTTGTGGCTTCACCTTCCT +
Preference number: 5 (lower is better)
Translates to: ACLEFAALLPCPPECWDYALPLS*LWLHLP
Trigger: AGGAAGGTGAAGCCACAACAAGGAAAGAGGCAGAGC...ATAATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAGGCAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp CCACTAAAGCCAAGTCCCTTAAATGTGGACACTTGCCAAGTGCAATCTTGCCAGCTCTTCAGCACAGATTaGGGGTTGCAGAGCACAGGG +
Preference number: 5 (lower is better)
Translates to: PLKPSPLNVDTCQVQSCQLFSTD*GLQSTG
Trigger: CCCTGTGCTCTGCAACCCCAAATCTGTGCTGAAGAG...CTGGCAAGATTGCACTTGGCAAGTGTCCACATTTAAGGGACTTGGCTTTAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp AGAAGAATCTACTGTGACAGGGATGGAAGGCAAGAGACTCAAGGAATTCGGCCAGCTCTGCCTCTTTCCTaGTTGTGGCTTCACCTTCCT +
Preference number: 5 (lower is better)
Translates to: RRIYCDRDGRQETQGIRPALPLS*LWLHLP
Trigger: AGGAAGGTGAAGCCACAACAAGGAAAGAGGCAGAGC...TGGCCGAATTCCTTGAGTCTCTTGCCTTCCATCCCTGTCACAGTAGATTCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp GATGGAGCTTGTAGTGGCAAGCAGATCCCTAAATTGGCATCACATCCCATGACATCTACATTCAGCACGTaGAGGCCATTGACAGAGACG +
Preference number: 5 (lower is better)
Translates to: DGACSGKQIPKLASHPMTSTFST*RPLTET
Trigger: CGTCTCTGTCAATGGCCTCAACGTGCTGAATGTAGA...TGTCATGGGATGTGATGCCAATTTAGGGATCTGCTTGCCACTACAAGCTCCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp CCAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCAGTCAATCAGCTCTTTaGCAACAAAGCAGTTTGGGT +
Preference number: 5 (lower is better)
Translates to: PGSHYYQNSSDHPPASASSQSAL*QQSSLG
Trigger: ACCCAAACTGCTTTGTTGCAAAAGAGCTGATTGACT...GGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS GCA 90 bp GTCAGAGGCCTCCTTATGTTCAATGAGCCAGTCAATCAGCTCTTTTaGAACAAAGCAGTTTGGGTAGGTTTTGAGATGGTGCCGTCTATC +
Preference number: 5 (lower is better)
Translates to: VRGLLMFNEPVNQLF*NKAVWVGFEMVPSI
Trigger: GATAGACGGCACCATCTCAAAACCTACCCAAACTGCTTTGTTGCAAAAGAGCTGATTGACTGGCTCATTGAACATAAGGAGGCCTCTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
ENSMUST00000226687.2
CDS-3UTR CAA 90 bp CAGGCTCACATTACTACCAGAACTCAAGTGATCATCCTCCTGCCTCAGCATCCTAGTCAATCAGCTCTTTaGCAACAAAGCAGTTTGGGT +
Preference number: 5 (lower is better)
Translates to: QAHITTRTQVIILLPQHPSQSAL*QQSSLG
Trigger: ACCCAAACTGCTTTGTTGCAAAAGAGCTGATTGACT...AGGATGCTGAGGCAGGAGGATGATCACTTGAGTTCTGGTAGTAATGTGAGCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS TCA 90 bp TCTATCTTTAATAACCTTTTCTTCATGGAGCCGCAGCCTGCAGCCTaGGGTTATTACACTCAGAGGAGGAAGTCGATCCTCAGAGATAGA +
Preference number: 5 (lower is better)
Translates to: SIFNNLFFMEPQPAA*GYYTQRRKSILRDR
Trigger: TCTATCTCTGAGGATCGACTTCCTCCTCTGAGTGTAATAACCTCAGGCTGCAGGCTGCGGCTCCATGAAGAAAAGGTTATTAAAGATAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000226687.2
CDS-3UTR CAA 90 bp GCTTGCCTTGAATTTGCAGCACTTCTGCCTTGCCCTCCTGAATGCTGGGATTATAAGAGTTTTACATCCTaGAATTCCTTGTGCTCATCA +
Preference number: 5 (lower is better)
Translates to: ACLEFAALLPCPPECWDYKSFTS*NSLCSS
Trigger: TGATGAGCACAAGGAATTCAAGGATGTAAAACTCTT...ATAATCCCAGCATTCAGGAGGGCAAGGCAGAAGTGCTGCAAATTCAAGGCAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp GCTGTGTTTTGGTTTTTAAAGATATGTAACCTGGTTCTTCCACATTCAAACAGCCTCTTCAGCACAGATTaGGGGTTGCAGAGCACAGGG +
Preference number: 5 (lower is better)
Translates to: AVFWFLKICNLVLPHSNSLFSTD*GLQSTG
Trigger: CCCTGTGCTCTGCAACCCCAAATCTGTGCTGAAGAG...GCTGTTTGAATGTGGAAGAACCAGGTTACATATCTTTAAAAACCAAAACACAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp AGGAAGAAAGTTTACTTTGTGATGACTGCTTCTAAGGTGTTGAATGCTTTAAGGTCTACATTCAGCACGTaGAGGCCATTGACAGAGACG +
Preference number: 5 (lower is better)
Translates to: RKKVYFVMTASKVLNALRSTFST*RPLTET
Trigger: CGTCTCTGTCAATGGCCTCAACGTGCTGAATGTAGA...CCTTAAAGCATTCAACACCTTAGAAGCAGTCATCACAAAGTAAACTTTCTTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp CTACGATATCTGGTTCAAAGGAAGTCTTTTCTAGATCAAGAAAATATTCGTGAGACGATCTTGATCTCCTaGCTGGGGCTGACTGACATA +
Preference number: 5 (lower is better)
Translates to: LRYLVQRKSFLDQENIRETILIS*LGLTDI
Trigger: TATGTCAGTCAGCCCCAGCAAGGAGATCAAGATCGT...CTCACGAATATTTTCTTGATCTAGAAAAGACTTCCTTTGAACCAGATATCGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS-3UTR CAA 90 bp TTCCTGGCCAACTTGGAATACATACAGAATAAGACCTTGGTATTTGAAACAAATAAGAGTTTTACATCCTaGAATTCCTTGTGCTCATCA +
Preference number: 5 (lower is better)
Translates to: FLANLEYIQNKTLVFETNKSFTS*NSLCSS
Trigger: TGATGAGCACAAGGAATTCAAGGATGTAAAACTCTT...ATTTGTTTCAAATACCAAGGTCTTATTCTGTATGTATTCCAAGTTGGCCAGGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096433.10
CDS GCA 72 bp GCTCTCTCTGCTGCACCCCGCCGCTCCCGCCGGCGTTaGTGTCGCTGCTACCACTGCCGCCGCTGCTGCCCT +
Preference number: 6 (lower is better)
Translates to: ALSAAPRRSRRR*CRCYHCRRCCP
Trigger: AGGGCAGCAGCGGCGGCAGTGGTAGCAGCGACAGCAACGCCGGCGGGAGCGGCGGGGTGCAGCAGAGAGAGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS CAA 72 bp AGCTCTCTCTGCTGCACCCCGCCGCTCCCGCCGGCGTaGCTGTCGCTGCTACCACTGCCGCCGCTGCTGCCC +
Preference number: 6 (lower is better)
Translates to: SSLCCTPPLPPA*LSLLPLPPLLP
Trigger: GGGCAGCAGCGGCGGCAGTGGTAGCAGCGACAGCAACGCCGGCGGGAGCGGCGGGGTGCAGCAGAGAGAGCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS GCA 72 bp ACTAGGACTTCAGCCATGCGTTCCAGCTCTCTCTGCTaGACCCCGCCGCTCCCGCCGGCGTTGCTGTCGCTG +
Preference number: 6 (lower is better)
Translates to: TRTSAMRSSSLC*TPPLPPALLSL
Trigger: CAGCGACAGCAACGCCGGCGGGAGCGGCGGGGTGCAGCAGAGAGAGCTGGAACGCATGGCTGAAGTCCTAGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS GCA 72 bp GCTCTCAGTCCCTGTGTCCTTCATCCCTGCAGCGGCTaGAGGTCCACTGGGGTCCACAGCCTGGATGTGGCA +
Preference number: 6 (lower is better)
Translates to: ALSPCVLHPCSG*RSTGVHSLDVA
Trigger: TGCCACATCCAGGCTGTGGACCCCAGTGGACCTGCAGCCGCTGCAGGGATGAAGGACACAGGGACTGAGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100660.11
CDS GCA 72 bp GACGACAAACTGACAGACCTTCATCCCTGCAGCGGCTaGAGGTCCACTGGGGTCCACAGCCTGGATGTGGCA +
Preference number: 6 (lower is better)
Translates to: DDKLTDLHPCSG*RSTGVHSLDVA
Trigger: TGCCACATCCAGGCTGTGGACCCCAGTGGACCTGCAGCCGCTGCAGGGATGAAGGTCTGTCAGTTTGTCGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS CCA 72 bp GCGGCTGCAGGTCCACTGGGGTCCACAGCCTGGATGTaGCATGGTTTACTTCCTCGTACCACAAAGCCCCAG +
Preference number: 6 (lower is better)
Translates to: AAAGPLGSTAWM*HGLLPRTTKPQ
Trigger: CTGGGGCTTTGTGGTACGAGGAAGTAAACCATGCCACATCCAGGCTGTGGACCCCAGTGGACCTGCAGCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS CCA 72 bp CCTGCAGCGGCTGCAGGTCCACTGGGGTCCACAGCCTaGATGTGGCATGGTTTACTTCCTCGTACCACAAAG +
Preference number: 6 (lower is better)
Translates to: PAAAAGPLGSTA*MWHGLLPRTTK
Trigger: CTTTGTGGTACGAGGAAGTAAACCATGCCACATCCAGGCTGTGGACCCCAGTGGACCTGCAGCCGCTGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS CCA 72 bp TGCAGGTCCACTGGGGTCCACAGCCTGGATGTGGCATaGTTTACTTCCTCGTACCACAAAGCCCCAGCCAAC +
Preference number: 6 (lower is better)
Translates to: CRSTGVHSLDVA*FTSSYHKAPAN
Trigger: GTTGGCTGGGGCTTTGTGGTACGAGGAAGTAAACCATGCCACATCCAGGCTGTGGACCCCAGTGGACCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS CAA 90 bp CTGCCGCAGCTGCTCATGCTGCTCCTCCGCACGGCAGACACGATCTaGATCTCCTTGCTGGGGCTGACTGACATAAAGCTGGTAGATTTC +
Preference number: 6 (lower is better)
Translates to: LPQLLMLLLRTADTI*ISLLGLTDIKLVDF
Trigger: GAAATCTACCAGCTTTATGTCAGTCAGCCCCAGCAAGGAGATCAAGATCGTGTCTGCCGTGCGGAGGAGCAGCATGAGCAGCTGCGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS GCA 72 bp ATGTTGCCCAGGCTGGCCTTGAAGTCACAATCTTCCTaGTCTCAGTCCCTGTGTCCTTCATCCCTGCAGCGG +
Preference number: 6 (lower is better)
Translates to: MLPRLALKSQSS*SQSLCPSSLQR
Trigger: CCGCTGCAGGGATGAAGGACACAGGGACTGAGAGCAGGAAGATTGTGACTTCAAGGCCAGCCTGGGCAACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100660.11
CDS CAA 72 bp CTGCTCATGCTGCTCCTCCGCACGGCAGACACGATCTaGATCTCCTTGCTGGGGCTGACTGACATAAAGCTG +
Preference number: 6 (lower is better)
Translates to: LLMLLLRTADTI*ISLLGLTDIKL
Trigger: CAGCTTTATGTCAGTCAGCCCCAGCAAGGAGATCAAGATCGTGTCTGCCGTGCGGAGGAGCAGCATGAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS TCA 72 bp CGTACGGAGCCCCCGGAGTCAAGAGTTCCTCAGAAGTaGCAGGTCTCTTCAGCACAGATTTGGGGTTGCAGA +
Preference number: 6 (lower is better)
Translates to: RTEPPESRVPQK*QVSSAQIWGCR
Trigger: TCTGCAACCCCAAATCTGTGCTGAAGAGACCTGTCACTTCTGAGGAACTCTTGACTCCGGGGGCTCCGTACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS GCA 72 bp GCCAACTGCGTCACCAACAATCGTGAATGTCTTCCTTaGGTACGGAGCCCCCGGAGTCAAGAGTTCCTCAGA +
Preference number: 6 (lower is better)
Translates to: ANCVTNNRECLP*VRSPRSQEFLR
Trigger: TCTGAGGAACTCTTGACTCCGGGGGCTCCGTACGCAAGGAAGACATTCACGATTGTTGGTGACGCAGTTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS CAA 72 bp CTGCTCCTCCGCACGGCAGACACGATCTTGATCTCCTaGCTGGGGCTGACTGACATAAAGCTGGTAGATTTC +
Preference number: 6 (lower is better)
Translates to: LLLRTADTILIS*LGLTDIKLVDF
Trigger: GAAATCTACCAGCTTTATGTCAGTCAGCCCCAGCAAGGAGATCAAGATCGTGTCTGCCGTGCGGAGGAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS GCA 72 bp GACATAAAGCTGGTAGATTTCCGACTGTCGTGGCTCTaGTTCCTCAGACAGAAGGGACTGTCATGCGTCTCC +
Preference number: 6 (lower is better)
Translates to: DIKLVDFRLSWL*FLRQKGLSCVS
Trigger: GGAGACGCATGACAGTCCCTTCTGTCTGAGGAAGCAGAGCCACGACAGTCGGAAATCTACCAGCTTTATGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS GCA 72 bp TTAATAACCTTTTCTTCATGGAGCCGCAGCCGGAGCTaGTCTCCCGTAACTAGGACTTCAGCCATGCGTTCC +
Preference number: 6 (lower is better)
Translates to: LITFSSWSRSRS*SPVTRTSAMRS
Trigger: GGAACGCATGGCTGAAGTCCTAGTTACGGGAGAGCAGCTCCGGCTGCGGCTCCATGAAGAAAAGGTTATTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS GCA 72 bp CTGTCCTCTCATGAAGGCCTTCACCTCACTGTCCAGTaGAAAGGTCCCATCATCCTTCCTAAAGCGGTAGAA +
Preference number: 6 (lower is better)
Translates to: LSSHEGLHLTVQ*KGPIILPKAVE
Trigger: TTCTACCGCTTTAGGAAGGATGATGGGACCTTTGCACTGGACAGTGAGGTGAAGGCCTTCATGAGAGGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS CCA 72 bp CTGACTGACATAAAGCTGGTAGATTTCCGACTGTCGTaGCTCTGCTTCCTCAGACAGAAGGGACTGTCATGC +
Preference number: 6 (lower is better)
Translates to: LTDIKLVDFRLS*LCFLRQKGLSC
Trigger: GCATGACAGTCCCTTCTGTCTGAGGAAGCAGAGCCACGACAGTCGGAAATCTACCAGCTTTATGTCAGTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS CCA 72 bp GTCCAACTCCTCCATGACTTCCATGACAATTGTCCTTaGGCCTGTCAGAATCAGATTGCTCACGGTGCGGTA +
Preference number: 6 (lower is better)
Translates to: VQLLHDFHDNCP*ACQNQIAHGAV
Trigger: TACCGCACCGTGAGCAATCTGATTCTGACAGGCCCAAGGACAATTGTCATGGAAGTCATGGAGGAGTTGGAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
CDS CCA 72 bp AGATGGTGCCGTCTATCTTTAATAACCTTTTCTTCATaGAGCCGCAGCCGGAGCTGCTCTCCCGTAACTAGG +
Preference number: 6 (lower is better)
Translates to: RWCRLSLITFSS*SRSRSCSPVTR
Trigger: CCTAGTTACGGGAGAGCAGCTCCGGCTGCGGCTCCATGAAGAAAAGGTTATTAAAGATAGACGGCACCATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS TCA 72 bp AATAACCTTTTCTTCATGGAGCCGCAGCCTGCAGCCTaGGGTTATTACACTCAGAGGAGGAAGTCGATCCTC +
Preference number: 6 (lower is better)
Translates to: NNLFFMEPQPAA*GYYTQRRKSIL
Trigger: GAGGATCGACTTCCTCCTCTGAGTGTAATAACCTCAGGCTGCAGGCTGCGGCTCCATGAAGAAAAGGTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023056.8
ENSMUST00000226687.2
CDS TCA 72 bp TCGCCGTCTCTCGGTCAGAGGCCTCCTTATGTTCAATaGGCCAGTCAATCAGCTCTTTTGCAACAAAGCAGT +
Preference number: 6 (lower is better)
Translates to: SPSLGQRPPYVQ*ASQSALLQQSS
Trigger: ACTGCTTTGTTGCAAAAGAGCTGATTGACTGGCTCATTGAACATAAGGAGGCCTCTGACCGAGAGACGGCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
ENSMUST00000226687.2
CDS GCA 72 bp TGGTTTACTTCCTCGTACCACAAAGCCCCAGCCAACTaGGTCACCAACAATCGTGAATGTCTTCCTTGCGTA +
Preference number: 6 (lower is better)
Translates to: WFTSSYHKAPAN*VTNNRECLPCV
Trigger: TACGCAAGGAAGACATTCACGATTGTTGGTGACGCAGTTGGCTGGGGCTTTGTGGTACGAGGAAGTAAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
CDS GCA 72 bp CTCCTTATGTTCAATGAGCCAGTCAATCAGCTCTTTTaGAACAAAGCAGTTTGGGTAGGTTTTGAGATGGTG +
Preference number: 6 (lower is better)
Translates to: LLMFNEPVNQLF*NKAVWVGFEMV
Trigger: CACCATCTCAAAACCTACCCAAACTGCTTTGTTGCAAAAGAGCTGATTGACTGGCTCATTGAACATAAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
ENSMUST00000226687.2
CDS CCA 72 bp GAGCCAGTCAATCAGCTCTTTTGCAACAAAGCAGTTTaGGTAGGTTTTGAGATGGTGCCGTCTATCTTTAAT +
Preference number: 6 (lower is better)
Translates to: EPVNQLFCNKAV*VGFEMVPSIFN
Trigger: ATTAAAGATAGACGGCACCATCTCAAAACCTACCCAAACTGCTTTGTTGCAAAAGAGCTGATTGACTGGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023056.8
ENSMUST00000096433.10
ENSMUST00000100660.11
ENSMUST00000226687.2