RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DEPP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048489

Ensembl transcript IDs: ENSMUST00000067354.10, ENSMUST00000178241.4, ENSMUST00000204555.2

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACTGCTTTAGGGGCCTGAGACCCTTTTCCTTGGTCCTTTGCCCTTaGTTTCTCATGAGACTGTGGCAGCCACCCAGAGTACAGCCCGCA +
Preference number: 1 (lower is better)
Translates to: HCFRGLRPFSLVLCP*FLMRLWQPPRVQPA
Trigger: TGCGGGCTGTACTCTGGGTGGCTGCCACAGTCTCATGAGAAACCAAGGGCAAAGGACCAAGGAAAAGGGTCTCAGGCCCCTAAAGCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
3UTR-3UTR GCA 90 bp GGCAGCCACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGGAGGTGCAGTCCCTGCAGACCTaGCAGGAAGTGTCCACCACA +
Preference number: 2 (lower is better)
Translates to: GSHPEYSPHLLIRAIWEVQSLQT*QEVSTT
Trigger: TGTGGTGGACACTTCCTGGCAGGTCTGCAGGGACTG...CACCTCCCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGTGGCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
3UTR-3UTR GCA 90 bp TGTGGCAGCCACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGGAGGAATTGCCCAGTCCCTaGAGACCTGCCAGGAAGTGT +
Preference number: 2 (lower is better)
Translates to: CGSHPEYSPHLLIRAIWEELPSP*RPARKC
Trigger: ACACTTCCTGGCAGGTCTGCAGGGACTGGGCAATTC...CTCCCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGTGGCTGCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
3UTR-3UTR GCA 90 bp ACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGGAGGTGGTCACTCGGTCTCACTAGGAATTaGCCAGTCCCTGCAGACCTG +
Preference number: 2 (lower is better)
Translates to: TQSTARISSLEQSGRWSLGLTRN*PVPADL
Trigger: CAGGTCTGCAGGGACTGGGCAATTCCTAGTGAGACC...GAGTGACCACCTCCCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
3UTR CAA 90 bp AGGATGGTTGAAAGCCACTGCTTTAGGGGCCTGAGACCCTTTTCCTaGGTCCTTTGCCCTTGGTTTCTCATGAGACTGTGGCAGCCACCC +
Preference number: 2 (lower is better)
Translates to: RMVESHCFRGLRPFS*VLCPWFLMRLWQPP
Trigger: GGGTGGCTGCCACAGTCTCATGAGAAACCAAGGGCAAAGGACCAAGGAAAAGGGTCTCAGGCCCCTAAAGCAGTGGCTTTCAACCATCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
3UTR-3UTR GCA 90 bp TTCCTTGGTCCTTTGCCCTTGGTTTCTCATGAGACTGTGGCAGCCACCCAGAGTGAATTGCCCAGTCCCTaGAGACCTGCCAGGAAGTGT +
Preference number: 2 (lower is better)
Translates to: FLGPLPLVSHETVAATQSELPSP*RPARKC
Trigger: ACACTTCCTGGCAGGTCTGCAGGGACTGGGCAATTC...ACTCTGGGTGGCTGCCACAGTCTCATGAGAAACCAAGGGCAAAGGACCAAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
3UTR-3UTR CCA 90 bp CCCTTTTCCTTGGTCCTTTGCCCTTGGTTTCTCATGAGACTGTGGCAGCCACCCCTCATTAGAGCAATCTaGGAGGTGGTCACTCCACCT +
Preference number: 2 (lower is better)
Translates to: PFSLVLCPWFLMRLWQPPLIRAI*EVVTPP
Trigger: AGGTGGAGTGACCACCTCCCAGATTGCTCTAATGAG...GGGTGGCTGCCACAGTCTCATGAGAAACCAAGGGCAAAGGACCAAGGAAAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
3UTR-3UTR CCA 90 bp CACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGGAGGTGGTCACTTCGCTCTTTAGAGGATaGGTCTCACTAGGAATTGCC +
Preference number: 2 (lower is better)
Translates to: HPEYSPHLLIRAIWEVVTSLFRG*VSLGIA
Trigger: GGCAATTCCTAGTGAGACCCATCCTCTAAAGAGCGA...AGTGACCACCTCCCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
3UTR CCA 72 bp AGGGGCCTGAGACCCTTTTCCTTGGTCCTTTGCCCTTaGTTTCTCATGAGACTGTGGCAGCCACCCAGAGTA +
Preference number: 3 (lower is better)
Translates to: RGLRPFSLVLCP*FLMRLWQPPRV
Trigger: TACTCTGGGTGGCTGCCACAGTCTCATGAGAAACCAAGGGCAAAGGACCAAGGAAAAGGGTCTCAGGCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
3UTR CCA 72 bp CCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTaGGAGGTGGTCACTCCACCTACACTCACTTTAGTC +
Preference number: 3 (lower is better)
Translates to: PEYSPHLLIRAI*EVVTPPTLTLV
Trigger: GACTAAAGTGAGTGTAGGTGGAGTGACCACCTCCCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp TGTGGCAGCCACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGGAGGACGCTGGGGGTTCCTaGCCAGCTGCCCCATGTGAC +
Preference number: 4 (lower is better)
Translates to: CGSHPEYSPHLLIRAIWEDAGGS*PAAPCD
Trigger: GTCACATGGGGCAGCTGGGCAGGAACCCCCAGCGTC...CTCCCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGTGGCTGCCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp TGTGGCAGCCACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGGAGCCAGAGGGTTGTCAGTaGCGGGAGAGGGCAGTGTGG +
Preference number: 4 (lower is better)
Translates to: CGSHPEYSPHLLIRAIWEPEGCQ*RERAVW
Trigger: CCACACTGCCCTCTCCCGGCACTGACAACCCTCTGG...CTCCCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGTGGCTGCCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CCA 90 bp GCAGCCACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGGAGGTGGAGTGCTCAGGTACCCTaGCCTCACAGAGTCTCCCCG +
Preference number: 4 (lower is better)
Translates to: AATQSTARISSLEQSGRWSAQVP*PHRVSP
Trigger: CGGGGAGACTCTGTGAGGCCAGGGTACCTGAGCACT...CCACCTCCCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGTGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR TCA 90 bp AGCCCGCATCTCCTCATTAGAGCAATCTGGGAGGTGGTCACTCCACCTACACTCGACCTTGTCCAGCACTaGGGTGGGCTGTGCCAGCTG +
Preference number: 4 (lower is better)
Translates to: SPHLLIRAIWEVVTPPTLDLVQH*GGLCQL
Trigger: CAGCTGGCACAGCCCACCTCAGTGCTGGACAAGGTC...GAGTGTAGGTGGAGTGACCACCTCCCAGATTGCTCTAATGAGGAGATGCGGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR TCA 90 bp GACTGTGGCAGCCACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGTGGGCTGCAGGCTGCTaGCGCAAAGAGAGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: DCGSHPEYSPHLLIRAIWWAAGC*RKESCL
Trigger: GAGACAGCTCTCTTTGCGTCAGCAGCCTGCAGCCCA...CCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGTGGCTGCCACAGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp TTCCTTGGTCCTTTGCCCTTGGTTTCTCATGAGACTGTGGCAGCCACCCAGAGTGACGCTGGGGGTTCCTaGCCAGCTGCCCCATGTGAC +
Preference number: 4 (lower is better)
Translates to: FLGPLPLVSHETVAATQSDAGGS*PAAPCD
Trigger: GTCACATGGGGCAGCTGGGCAGGAACCCCCAGCGTC...ACTCTGGGTGGCTGCCACAGTCTCATGAGAAACCAAGGGCAAAGGACCAAGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp CCCTTTTCCTTGGTCCTTTGCCCTTGGTTTCTCATGAGACTGTGGCAGCCACCCCCAGAGGGTTGTCAGTaGCGGGAGAGGGCAGTGTGG +
Preference number: 4 (lower is better)
Translates to: PFSLVLCPWFLMRLWQPPPEGCQ*RERAVW
Trigger: CCACACTGCCCTCTCCCGGCACTGACAACCCTCTGG...GGGTGGCTGCCACAGTCTCATGAGAAACCAAGGGCAAAGGACCAAGGAAAAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CCA 90 bp AGTCCCTGCAGACCTGCCAGGAAGTGTCCACCACAGGAGAGGAAAGCTAGAGAGCTGTTGGGACGGCTCTaGGCTGTGACCTTGTCCAGC +
Preference number: 4 (lower is better)
Translates to: SPCRPARKCPPQERKARELLGRL*AVTLSS
Trigger: GCTGGACAAGGTCACAGCCCAGAGCCGTCCCAACAG...CTCTCTAGCTTTCCTCTCCTGTGGTGGACACTTCCTGGCAGGTCTGCAGGGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CCA 90 bp AGTCCCTGCAGACCTGCCAGGAAGTGTCCACCACAGGAGAGGAAAGCTAGAGAGAGTGCTCAGGTACCCTaGCCTCACAGAGTCTCCCCG +
Preference number: 4 (lower is better)
Translates to: SPCRPARKCPPQERKARESAQVP*PHRVSP
Trigger: CGGGGAGACTCTGTGAGGCCAGGGTACCTGAGCACT...CTCTCTAGCTTTCCTCTCCTGTGGTGGACACTTCCTGGCAGGTCTGCAGGGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR TCA 90 bp GTTGAAAGCCACTGCTTTAGGGGCCTGAGACCCTTTTCCTTGGTCCTTTGCCCTGACCTTGTCCAGCACTaGGGTGGGCTGTGCCAGCTG +
Preference number: 4 (lower is better)
Translates to: VESHCFRGLRPFSLVLCPDLVQH*GGLCQL
Trigger: CAGCTGGCACAGCCCACCTCAGTGCTGGACAAGGTC...AGGGCAAAGGACCAAGGAAAAGGGTCTCAGGCCCCTAAAGCAGTGGCTTTCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp AGTCCCTGCAGACCTGCCAGGAAGTGTCCACCACAGGAGAGGAAAGCTAGAGAGCCTCTCCCATCTGCCTaGTCTCCCTGTGACTTCCCA +
Preference number: 4 (lower is better)
Translates to: SPCRPARKCPPQERKAREPLPSA*SPCDFP
Trigger: TGGGAAGTCACAGGGAGAGCAGGCAGATGGGAGAGG...CTCTCTAGCTTTCCTCTCCTGTGGTGGACACTTCCTGGCAGGTCTGCAGGGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp AGTCCCTGCAGACCTGCCAGGAAGTGTCCACCACAGGAGAGGAAAGCTAGAGAGGTCTCCCCGTGTCCTTaGCCATCTGTCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: SPCRPARKCPPQERKAREVSPCP*PSVWAH
Trigger: ATGTGCCCAGACAGATGGGCAAGGACACGGGGAGAC...CTCTCTAGCTTTCCTCTCCTGTGGTGGACACTTCCTGGCAGGTCTGCAGGGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CCA 90 bp CCCTTTTCCTTGGTCCTTTGCCCTTGGTTTCTCATGAGACTGTGGCAGCCACCCCTGTTGGGACGGCTCTaGGCTGTGACCTTGTCCAGC +
Preference number: 4 (lower is better)
Translates to: PFSLVLCPWFLMRLWQPPLLGRL*AVTLSS
Trigger: GCTGGACAAGGTCACAGCCCAGAGCCGTCCCAACAG...GGGTGGCTGCCACAGTCTCATGAGAAACCAAGGGCAAAGGACCAAGGAAAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CCA 90 bp ACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGGAGGTGGTCACTCCGGAGGTCTGGTGCCTaGGCCCTGGTTTTCTTCCCA +
Preference number: 4 (lower is better)
Translates to: TQSTARISSLEQSGRWSLRRSGA*ALVFFP
Trigger: TGGGAAGAAAACCAGGGCCCAGGCACCAGACCTCCG...GAGTGACCACCTCCCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR TCA 90 bp GTTGAAAGCCACTGCTTTAGGGGCCTGAGACCCTTTTCCTTGGTCCTTTGCCCTTGGGCTGCAGGCTGCTaGCGCAAAGAGAGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: VESHCFRGLRPFSLVLCPWAAGC*RKESCL
Trigger: GAGACAGCTCTCTTTGCGTCAGCAGCCTGCAGCCCA...AGGGCAAAGGACCAAGGAAAAGGGTCTCAGGCCCCTAAAGCAGTGGCTTTCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR TCA 90 bp AGCCCGCATCTCCTCATTAGAGCAATCTGGGAGGTGGTCACTCCACCTACACTCTGCCTGCTCTCCCTGTaGCTTCCCAAAGAGCCAGTC +
Preference number: 4 (lower is better)
Translates to: SPHLLIRAIWEVVTPPTLCLLSL*LPKEPV
Trigger: GACTGGCTCTTTGGGAAGTCACAGGGAGAGCAGGCA...GAGTGTAGGTGGAGTGACCACCTCCCAGATTGCTCTAATGAGGAGATGCGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp TTCCTTGGTCCTTTGCCCTTGGTTTCTCATGAGACTGTGGCAGCCACCCAGAGTGAGGGCAGTGTGGGCTaGAGGCTGCTGACGCAAAGA +
Preference number: 4 (lower is better)
Translates to: FLGPLPLVSHETVAATQSEGSVG*RLLTQR
Trigger: TCTTTGCGTCAGCAGCCTGCAGCCCACACTGCCCTC...ACTCTGGGTGGCTGCCACAGTCTCATGAGAAACCAAGGGCAAAGGACCAAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CCA 90 bp ACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGGAGGTGGTCACTCCTGGTGCCTGGGCCCTaGTTTTCTTCCCAGAGAGTG +
Preference number: 4 (lower is better)
Translates to: TQSTARISSLEQSGRWSLLVPGP*FSSQRV
Trigger: CACTCTCTGGGAAGAAAACCAGGGCCCAGGCACCAG...GAGTGACCACCTCCCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp TTCCTTGGTCCTTTGCCCTTGGTTTCTCATGAGACTGTGGCAGCCACCCAGAGTCCTCTCCCATCTGCCTaGTCTCCCTGTGACTTCCCA +
Preference number: 4 (lower is better)
Translates to: FLGPLPLVSHETVAATQSPLPSA*SPCDFP
Trigger: TGGGAAGTCACAGGGAGAGCAGGCAGATGGGAGAGG...ACTCTGGGTGGCTGCCACAGTCTCATGAGAAACCAAGGGCAAAGGACCAAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp GACTGTGGCAGCCACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGTTTCTTCCCAGAGAGTaGTCAGGTACCCTGGCCTCA +
Preference number: 4 (lower is better)
Translates to: DCGSHPEYSPHLLIRAIWFLPRE*SGTLAS
Trigger: TGAGGCCAGGGTACCTGAGCACTCTCTGGGAAGAAA...CCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGTGGCTGCCACAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp AGTCCCTGCAGACCTGCCAGGAAGTGTCCACCACAGGAGAGGAAAGCTAGAGAGTTTCTTCCCAGAGAGTaGTCAGGTACCCTGGCCTCA +
Preference number: 4 (lower is better)
Translates to: SPCRPARKCPPQERKAREFLPRE*SGTLAS
Trigger: TGAGGCCAGGGTACCTGAGCACTCTCTGGGAAGAAA...CTCTCTAGCTTTCCTCTCCTGTGGTGGACACTTCCTGGCAGGTCTGCAGGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp GTTGAAAGCCACTGCTTTAGGGGCCTGAGACCCTTTTCCTTGGTCCTTTGCCCTAGGTCGGAGGTCTGGTaGCTGGGCCCTGGTTTTCTT +
Preference number: 4 (lower is better)
Translates to: VESHCFRGLRPFSLVLCPRSEVW*LGPGFL
Trigger: AAGAAAACCAGGGCCCAGGCACCAGACCTCCGACCT...AGGGCAAAGGACCAAGGAAAAGGGTCTCAGGCCCCTAAAGCAGTGGCTTTCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp TTCCTTGGTCCTTTGCCCTTGGTTTCTCATGAGACTGTGGCAGCCACCCAGAGTAGGTCGGAGGTCTGGTaGCTGGGCCCTGGTTTTCTT +
Preference number: 4 (lower is better)
Translates to: FLGPLPLVSHETVAATQSRSEVW*LGPGFL
Trigger: AAGAAAACCAGGGCCCAGGCACCAGACCTCCGACCT...ACTCTGGGTGGCTGCCACAGTCTCATGAGAAACCAAGGGCAAAGGACCAAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CCA 90 bp CTCCTCATTAGAGCAATCTGGGAGGTGGTCACTCCACCTACACTCACTTTAGTCCGGAGGTCTGGTGCCTaGGCCCTGGTTTTCTTCCCA +
Preference number: 4 (lower is better)
Translates to: LLIRAIWEVVTPPTLTLVRRSGA*ALVFFP
Trigger: TGGGAAGAAAACCAGGGCCCAGGCACCAGACCTCCG...GACTAAAGTGAGTGTAGGTGGAGTGACCACCTCCCAGATTGCTCTAATGAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR GCA 90 bp CTCCTCATTAGAGCAATCTGGGAGGTGGTCACTCCACCTACACTCACTTTAGTCGTCTCCCCGTGTCCTTaGCCATCTGTCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: LLIRAIWEVVTPPTLTLVVSPCP*PSVWAH
Trigger: ATGTGCCCAGACAGATGGGCAAGGACACGGGGAGAC...GACTAAAGTGAGTGTAGGTGGAGTGACCACCTCCCAGATTGCTCTAATGAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CCA 90 bp CACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGGAGGTGGTCACTGAGTTCATGGATCACTaGGAGGTGCAAATAGAGAGT +
Preference number: 4 (lower is better)
Translates to: HPEYSPHLLIRAIWEVVTEFMDH*EVQIES
Trigger: ACTCTCTATTTGCACCTCCCAGTGATCCATGAACTC...AGTGACCACCTCCCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CCA 90 bp TTTAGGGGCCTGAGACCCTTTTCCTTGGTCCTTTGCCCTTGGTTTCTCATGAGAGAGTTCATGGATCACTaGGAGGTGCAAATAGAGAGT +
Preference number: 4 (lower is better)
Translates to: FRGLRPFSLVLCPWFLMREFMDH*EVQIES
Trigger: ACTCTCTATTTGCACCTCCCAGTGATCCATGAACTC...TCTCATGAGAAACCAAGGGCAAAGGACCAAGGAAAAGGGTCTCAGGCCCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS TCA 90 bp GAGGGTTGTCAGTGCCGGGAGAGGGCAGTGTGGGCTGCAGGCTGCTaGCGCAAAGAGAGCTGTCTCCTGGAGACTCGGCCTGGCGCCTCT +
Preference number: 5 (lower is better)
Translates to: EGCQCRERAVWAAGC*RKESCLLETRPGAS
Trigger: AGAGGCGCCAGGCCGAGTCTCCAGGAGACAGCTCTCTTTGCGTCAGCAGCCTGCAGCCCACACTGCCCTCTCCCGGCACTGACAACCCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS GCA 90 bp AGCCAGTCCAGAGGGTTGTCAGTGCCGGGAGAGGGCAGTGTGGGCTaGAGGCTGCTGACGCAAAGAGAGCTGTCTCCTGGAGACTCGGCC +
Preference number: 5 (lower is better)
Translates to: SQSRGLSVPGEGSVG*RLLTQRELSPGDSA
Trigger: GGCCGAGTCTCCAGGAGACAGCTCTCTTTGCGTCAGCAGCCTGCAGCCCACACTGCCCTCTCCCGGCACTGACAACCCTCTGGACTGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS TCA 90 bp CCTTGTCCAGCACTGAGGTGGGCTGTGCCAGCTGACAGATACACCTaGCGTAGTCATCCAGGCTGGGGGACGCTGGGGGTTCCTGCCCAG +
Preference number: 5 (lower is better)
Translates to: PCPALRWAVPADRYT*RSHPGWGTLGVPAQ
Trigger: CTGGGCAGGAACCCCCAGCGTCCCCCAGCCTGGATGACTACGTCAGGTGTATCTGTCAGCTGGCACAGCCCACCTCAGTGCTGGACAAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
ENSMUST00000204555.2
CDS-3UTR CAA 90 bp GACTGTGGCAGCCACCCAGAGTACAGCCCGCATCTCCTCATTAGAGCAATCTGGGGCCGGGAGGGTCTGTaGGGACGGCTCTGGGCTGTG +
Preference number: 5 (lower is better)
Translates to: DCGSHPEYSPHLLIRAIWGREGL*GRLWAV
Trigger: CACAGCCCAGAGCCGTCCCAACAGACCCTCCCGGCC...CCAGATTGCTCTAATGAGGAGATGCGGGCTGTACTCTGGGTGGCTGCCACAGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CCA 90 bp GGTGCCTGGGCCCTGGTTTTCTTCCCAGAGAGTGCTCAGGTACCCTaGCCTCACAGAGTCTCCCCGTGTCCTTGCCCATCTGTCTGGGCA +
Preference number: 5 (lower is better)
Translates to: GAWALVFFPESAQVP*PHRVSPCPCPSVWA
Trigger: TGCCCAGACAGATGGGCAAGGACACGGGGAGACTCTGTGAGGCCAGGGTACCTGAGCACTCTCTGGGAAGAAAACCAGGGCCCAGGCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CAA 90 bp TCATCGCTCTTTAGAGGATGGGTCTCACTAGGAATTGCCCAGTCCCTGCAGACCGGCCGGGAGGGTCTGTaGGGACGGCTCTGGGCTGTG +
Preference number: 5 (lower is better)
Translates to: SSLFRGWVSLGIAQSLQTGREGL*GRLWAV
Trigger: CACAGCCCAGAGCCGTCCCAACAGACCCTCCCGGCC...GGTCTGCAGGGACTGGGCAATTCCTAGTGAGACCCATCCTCTAAAGAGCGATGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS TCA 90 bp ACCAGTCCTGTTGGGTCGACCTCTCCCATCTGCCTGCTCTCCCTGTaGCTTCCCAAAGAGCCAGTCCAGAGGGTTGTCAGTGCCGGGAGA +
Preference number: 5 (lower is better)
Translates to: TSPVGSTSPICLLSL*LPKEPVQRVVSAGR
Trigger: TCTCCCGGCACTGACAACCCTCTGGACTGGCTCTTTGGGAAGTCACAGGGAGAGCAGGCAGATGGGAGAGGTCGACCCAACAGGACTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS GCA 90 bp GAGAGTGCTCAGGTACCCTGGCCTCACAGAGTCTCCCCGTGTCCTTaGCCATCTGTCTGGGCACATCCCAGGGATCTGAAGAACCAGTCC +
Preference number: 5 (lower is better)
Translates to: ESAQVPWPHRVSPCP*PSVWAHPRDLKNQS
Trigger: GGACTGGTTCTTCAGATCCCTGGGATGTGCCCAGACAGATGGGCAAGGACACGGGGAGACTCTGTGAGGCCAGGGTACCTGAGCACTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CCA 90 bp GTACCCTGGCCTCACAGAGTCTCCCCGTGTCCTTGCCCATCTGTCTaGGCACATCCCAGGGATCTGAAGAACCAGTCCTGTTGGGTCGAC +
Preference number: 5 (lower is better)
Translates to: VPWPHRVSPCPCPSV*AHPRDLKNQSCWVD
Trigger: GTCGACCCAACAGGACTGGTTCTTCAGATCCCTGGGATGTGCCCAGACAGATGGGCAAGGACACGGGGAGACTCTGTGAGGCCAGGGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CAA 90 bp AGTCCCTGCAGACCTGCCAGGAAGTGTCCACCACAGGAGAGGAAAGCTAGAGAGAGTCTCCCCGTGTCCTaGCCCATCTGTCTGGGCACA +
Preference number: 5 (lower is better)
Translates to: SPCRPARKCPPQERKARESLPVS*PICLGT
Trigger: TGTGCCCAGACAGATGGGCAAGGACACGGGGAGACT...CTCTCTAGCTTTCCTCTCCTGTGGTGGACACTTCCTGGCAGGTCTGCAGGGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS GCA 90 bp GTTCATGGATCACTGGGAGGTGCAAATAGAGAGTACCTAGGATACTaGTGGGGCGAGAGCTGGAGACGGACGCTAAGGCCCGGCAGGACT +
Preference number: 5 (lower is better)
Translates to: VHGSLGGANREYLGY*WGESWRRTLRPGRT
Trigger: AGTCCTGCCGGGCCTTAGCGTCCGTCTCCAGCTCTCGCCCCAGCAGTATCCTAGGTACTCTCTATTTGCACCTCCCAGTGATCCATGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CCA 90 bp CCATCTGTCTGGGCACATCCCAGGGATCTGAAGAACCAGTCCTGTTaGGTCGACCTCTCCCATCTGCCTGCTCTCCCTGTGACTTCCCAA +
Preference number: 5 (lower is better)
Translates to: PSVWAHPRDLKNQSC*VDLSHLPALPVTSQ
Trigger: TTGGGAAGTCACAGGGAGAGCAGGCAGATGGGAGAGGTCGACCCAACAGGACTGGTTCTTCAGATCCCTGGGATGTGCCCAGACAGATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS GCA 90 bp GGATCTGAAGAACCAGTCCTGTTGGGTCGACCTCTCCCATCTGCCTaGTCTCCCTGTGACTTCCCAAAGAGCCAGTCCAGAGGGTTGTCA +
Preference number: 5 (lower is better)
Translates to: GSEEPVLLGRPLPSA*SPCDFPKSQSRGLS
Trigger: TGACAACCCTCTGGACTGGCTCTTTGGGAAGTCACAGGGAGAGCAGGCAGATGGGAGAGGTCGACCCAACAGGACTGGTTCTTCAGATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS-3UTR CAA 90 bp TCATCGCTCTTTAGAGGATGGGTCTCACTAGGAATTGCCCAGTCCCTGCAGACCAGTCTCCCCGTGTCCTaGCCCATCTGTCTGGGCACA +
Preference number: 5 (lower is better)
Translates to: SSLFRGWVSLGIAQSLQTSLPVS*PICLGT
Trigger: TGTGCCCAGACAGATGGGCAAGGACACGGGGAGACT...GGTCTGCAGGGACTGGGCAATTCCTAGTGAGACCCATCCTCTAAAGAGCGATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CAA 90 bp GCCTGGCGCCTCTTCTCTCGAGTCCAGGCTGGCCGGGAGGGTCTGTaGGGACGGCTCTGGGCTGTGACCTTGTCCAGCACTGAGGTGGGC +
Preference number: 6 (lower is better)
Translates to: AWRLFSRVQAGREGL*GRLWAVTLSSTEVG
Trigger: GCCCACCTCAGTGCTGGACAAGGTCACAGCCCAGAGCCGTCCCAACAGACCCTCCCGGCCAGCCTGGACTCGAGAGAAGAGGCGCCAGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CAA 72 bp CTCTTCTCTCGAGTCCAGGCTGGCCGGGAGGGTCTGTaGGGACGGCTCTGGGCTGTGACCTTGTCCAGCACT +
Preference number: 6 (lower is better)
Translates to: LFSRVQAGREGL*GRLWAVTLSST
Trigger: AGTGCTGGACAAGGTCACAGCCCAGAGCCGTCCCAACAGACCCTCCCGGCCAGCCTGGACTCGAGAGAAGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CAA 90 bp TCTGCCTGCTCTCCCTGTGACTTCCCAAAGAGCCAGTCCAGAGGGTaGTCAGTGCCGGGAGAGGGCAGTGTGGGCTGCAGGCTGCTGACG +
Preference number: 6 (lower is better)
Translates to: SACSPCDFPKSQSRG*SVPGEGSVGCRLLT
Trigger: CGTCAGCAGCCTGCAGCCCACACTGCCCTCTCCCGGCACTGACAACCCTCTGGACTGGCTCTTTGGGAAGTCACAGGGAGAGCAGGCAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS TCA 72 bp GCACTGAGGTGGGCTGTGCCAGCTGACAGATACACCTaGCGTAGTCATCCAGGCTGGGGGACGCTGGGGGTT +
Preference number: 6 (lower is better)
Translates to: ALRWAVPADRYT*RSHPGWGTLGV
Trigger: AACCCCCAGCGTCCCCCAGCCTGGATGACTACGTCAGGTGTATCTGTCAGCTGGCACAGCCCACCTCAGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
ENSMUST00000204555.2
CDS GCA 72 bp CAGGTACCCTGGCCTCACAGAGTCTCCCCGTGTCCTTaGCCATCTGTCTGGGCACATCCCAGGGATCTGAAG +
Preference number: 6 (lower is better)
Translates to: QVPWPHRVSPCP*PSVWAHPRDLK
Trigger: CTTCAGATCCCTGGGATGTGCCCAGACAGATGGGCAAGGACACGGGGAGACTCTGTGAGGCCAGGGTACCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CCA 72 bp CCAGCTTTTCAGGTCGGAGGTCTGGTGCCTGGGCCCTaGTTTTCTTCCCAGAGAGTGCTCAGGTACCCTGGC +
Preference number: 6 (lower is better)
Translates to: PAFQVGGLVPGP*FSSQRVLRYPG
Trigger: GCCAGGGTACCTGAGCACTCTCTGGGAAGAAAACCAGGGCCCAGGCACCAGACCTCCGACCTGAAAAGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CCA 72 bp TGGGCACATCCCAGGGATCTGAAGAACCAGTCCTGTTaGGTCGACCTCTCCCATCTGCCTGCTCTCCCTGTG +
Preference number: 6 (lower is better)
Translates to: WAHPRDLKNQSC*VDLSHLPALPV
Trigger: CACAGGGAGAGCAGGCAGATGGGAGAGGTCGACCCAACAGGACTGGTTCTTCAGATCCCTGGGATGTGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CCA 72 bp GCCCTGGTTTTCTTCCCAGAGAGTGCTCAGGTACCCTaGCCTCACAGAGTCTCCCCGTGTCCTTGCCCATCT +
Preference number: 6 (lower is better)
Translates to: ALVFFPESAQVP*PHRVSPCPCPS
Trigger: AGATGGGCAAGGACACGGGGAGACTCTGTGAGGCCAGGGTACCTGAGCACTCTCTGGGAAGAAAACCAGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CAA 72 bp CCCCATGTGACAGCTCTTCTGACATTTCCCGAATCGTaGGCAAATGGGGCACGGGCAGCAGAAGCCGGGACC +
Preference number: 6 (lower is better)
Translates to: PHVTALLTFPES*ANGARAAEAGT
Trigger: GGTCCCGGCTTCTGCTGCCCGTGCCCCATTTGCCAACGATTCGGGAAATGTCAGAAGAGCTGTCACATGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
ENSMUST00000204555.2
CDS CAA 72 bp CTGGGCACATCCCAGGGATCTGAAGAACCAGTCCTGTaGGGTCGACCTCTCCCATCTGCCTGCTCTCCCTGT +
Preference number: 6 (lower is better)
Translates to: LGTSQGSEEPVL*GRPLPSACSPC
Trigger: ACAGGGAGAGCAGGCAGATGGGAGAGGTCGACCCAACAGGACTGGTTCTTCAGATCCCTGGGATGTGCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CAA 72 bp TCAGGTACCCTGGCCTCACAGAGTCTCCCCGTGTCCTaGCCCATCTGTCTGGGCACATCCCAGGGATCTGAA +
Preference number: 6 (lower is better)
Translates to: SGTLASQSLPVS*PICLGTSQGSE
Trigger: TTCAGATCCCTGGGATGTGCCCAGACAGATGGGCAAGGACACGGGGAGACTCTGTGAGGCCAGGGTACCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CAA 90 bp CCCATCTGTCTGGGCACATCCCAGGGATCTGAAGAACCAGTCCTGTaGGGTCGACCTCTCCCATCTGCCTGCTCTCCCTGTGACTTCCCA +
Preference number: 6 (lower is better)
Translates to: PICLGTSQGSEEPVL*GRPLPSACSPCDFP
Trigger: TGGGAAGTCACAGGGAGAGCAGGCAGATGGGAGAGGTCGACCCAACAGGACTGGTTCTTCAGATCCCTGGGATGTGCCCAGACAGATGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CAA 90 bp AGAGAGTGCTCAGGTACCCTGGCCTCACAGAGTCTCCCCGTGTCCTaGCCCATCTGTCTGGGCACATCCCAGGGATCTGAAGAACCAGTC +
Preference number: 6 (lower is better)
Translates to: RECSGTLASQSLPVS*PICLGTSQGSEEPV
Trigger: GACTGGTTCTTCAGATCCCTGGGATGTGCCCAGACAGATGGGCAAGGACACGGGGAGACTCTGTGAGGCCAGGGTACCTGAGCACTCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS TCA 72 bp GTTGGGTCGACCTCTCCCATCTGCCTGCTCTCCCTGTaGCTTCCCAAAGAGCCAGTCCAGAGGGTTGTCAGT +
Preference number: 6 (lower is better)
Translates to: VGSTSPICLLSL*LPKEPVQRVVS
Trigger: ACTGACAACCCTCTGGACTGGCTCTTTGGGAAGTCACAGGGAGAGCAGGCAGATGGGAGAGGTCGACCCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS TCA 72 bp GTCCTTGCCCATCTGTCTGGGCACATCCCAGGGATCTaGAGAACCAGTCCTGTTGGGTCGACCTCTCCCATC +
Preference number: 6 (lower is better)
Translates to: VLAHLSGHIPGI*RTSPVGSTSPI
Trigger: GATGGGAGAGGTCGACCCAACAGGACTGGTTCTTCAGATCCCTGGGATGTGCCCAGACAGATGGGCAAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS GCA 72 bp GAACCAGTCCTGTTGGGTCGACCTCTCCCATCTGCCTaGTCTCCCTGTGACTTCCCAAAGAGCCAGTCCAGA +
Preference number: 6 (lower is better)
Translates to: EPVLLGRPLPSA*SPCDFPKSQSR
Trigger: TCTGGACTGGCTCTTTGGGAAGTCACAGGGAGAGCAGGCAGATGGGAGAGGTCGACCCAACAGGACTGGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CCA 72 bp CCTCACAGAGTCTCCCCGTGTCCTTGCCCATCTGTCTaGGCACATCCCAGGGATCTGAAGAACCAGTCCTGT +
Preference number: 6 (lower is better)
Translates to: PHRVSPCPCPSV*AHPRDLKNQSC
Trigger: ACAGGACTGGTTCTTCAGATCCCTGGGATGTGCCCAGACAGATGGGCAAGGACACGGGGAGACTCTGTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS CCA 72 bp GACTTTCTAGAAGTCCAGCTTTTCAGGTCGGAGGTCTaGTGCCTGGGCCCTGGTTTTCTTCCCAGAGAGTGC +
Preference number: 6 (lower is better)
Translates to: DFLEVQLFRSEV*CLGPGFLPREC
Trigger: GCACTCTCTGGGAAGAAAACCAGGGCCCAGGCACCAGACCTCCGACCTGAAAAGCTGGACTTCTAGAAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4
CDS GCA 72 bp TTTCTAGAAGTCCAGCTTTTCAGGTCGGAGGTCTGGTaGCTGGGCCCTGGTTTTCTTCCCAGAGAGTGCTCA +
Preference number: 6 (lower is better)
Translates to: FLEVQLFRSEVW*LGPGFLPRECS
Trigger: TGAGCACTCTCTGGGAAGAAAACCAGGGCCCAGGCACCAGACCTCCGACCTGAAAAGCTGGACTTCTAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067354.10
ENSMUST00000178241.4