RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DEPDC7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027173

Ensembl transcript IDs: ENSMUST00000028595.8

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GGCTTCTGGGCCACACTGAAACCCGGAGGTCTCTGTGCAGGGCTGTaGAGAGCCGACAGGTTCAGCGCCGCCGCCTTCTCTCGAACCGTG +
Preference number: 5 (lower is better)
Translates to: GFWATLKPGGLCAGL*RADRFSAAAFSRTV
Trigger: CACGGTTCGAGAGAAGGCGGCGGCGCTGAACCTGTCGGCTCTGCACAGCCCTGCACAGAGACCTCCGGGTTTCAGTGTGGCCCAGAAGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS TCA 90 bp TGCTGCTCCACACGTACGTGGCTCCGAATGGCTTCTGGGCCACACTaGAACCCGGAGGTCTCTGTGCAGGGCTGTGCAGAGCCGACAGGT +
Preference number: 5 (lower is better)
Translates to: CCSTRTWLRMASGPH*NPEVSVQGCAEPTG
Trigger: ACCTGTCGGCTCTGCACAGCCCTGCACAGAGACCTCCGGGTTTCAGTGTGGCCCAGAAGCCATTCGGAGCCACGTACGTGTGGAGCAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CCA 90 bp GTGTTTATAATGCTGCTCCACACGTACGTGGCTCCGAATGGCTTCTaGGCCACACTGAAACCCGGAGGTCTCTGTGCAGGGCTGTGCAGA +
Preference number: 5 (lower is better)
Translates to: VFIMLLHTYVAPNGF*ATLKPGGLCAGLCR
Trigger: TCTGCACAGCCCTGCACAGAGACCTCCGGGTTTCAGTGTGGCCCAGAAGCCATTCGGAGCCACGTACGTGTGGAGCAGCATTATAAACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CCA 90 bp TTGAAGGGTGTTTATAATGCTGCTCCACACGTACGTGGCTCCGAATaGCTTCTGGGCCACACTGAAACCCGGAGGTCTCTGTGCAGGGCT +
Preference number: 5 (lower is better)
Translates to: LKGVYNAAPHVRGSE*LLGHTETRRSLCRA
Trigger: AGCCCTGCACAGAGACCTCCGGGTTTCAGTGTGGCCCAGAAGCCATTCGGAGCCACGTACGTGTGGAGCAGCATTATAAACACCCTTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CCA 90 bp ACTCCTCCCTGTTCTGGGAGTCCTGAAGCTTCAGAAACAGCTGCGTaGCTTCTAACGCCATTTCCGTCTTCCCATTTACCAGGAGCTCTG +
Preference number: 5 (lower is better)
Translates to: TPPCSGSPEASETAA*LLTPFPSSHLPGAL
Trigger: CAGAGCTCCTGGTAAATGGGAAGACGGAAATGGCGTTAGAAGCCACGCAGCTGTTTCTGAAGCTTCAGGACTCCCAGAACAGGGAGGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS TCA 90 bp TGCCGTTTTAAGTGGTGCCTTCGCTTCTTCACTTCCACCTGGGTTTaGAGGGTGTTTATAATGCTGCTCCACACGTACGTGGCTCCGAAT +
Preference number: 5 (lower is better)
Translates to: CRFKWCLRFFTSTWV*RVFIMLLHTYVAPN
Trigger: ATTCGGAGCCACGTACGTGTGGAGCAGCATTATAAACACCCTTCAAACCCAGGTGGAAGTGAAGAAGCGAAGGCACCACTTAAAACGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CCA 90 bp TTATATCCACAACCATCTGGTCGGGAAGGTATTCCAAGCAGTCGATaGCTGCAGAGATCCATTCATCTTCCTGAGAGTCACCATAGGCCC +
Preference number: 5 (lower is better)
Translates to: LYPQPSGREGIPSSR*LQRSIHLPESHHRP
Trigger: GGGCCTATGGTGACTCTCAGGAAGATGAATGGATCTCTGCAGCCATCGACTGCTTGGAATACCTTCCCGACCAGATGGTTGTGGATATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CCA 90 bp CTGTCTGGTTGCTCAGGAAAGTTCCTGCTTATATCCACAACCATCTaGTCGGGAAGGTATTCCAAGCAGTCGATGGCTGCAGAGATCCAT +
Preference number: 5 (lower is better)
Translates to: LSGCSGKFLLISTTI*SGRYSKQSMAAEIH
Trigger: ATGGATCTCTGCAGCCATCGACTGCTTGGAATACCTTCCCGACCAGATGGTTGTGGATATAAGCAGGAACTTTCCTGAGCAACCAGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS GCA 90 bp GTTCCTTCACTAAGTCTGTTCTGTCTGGTTGCTCAGGAAAGTTCCTaGTTATATCCACAACCATCTGGTCGGGAAGGTATTCCAAGCAGT +
Preference number: 5 (lower is better)
Translates to: VPSLSLFCLVAQESS*LYPQPSGREGIPSS
Trigger: ACTGCTTGGAATACCTTCCCGACCAGATGGTTGTGGATATAAGCAGGAACTTTCCTGAGCAACCAGACAGAACAGACTTAGTGAAGGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS GCA 90 bp AAAGACTCTAGTTTGAACGGCTTCAAATACTTTGTAGTCCATAAGTaGCTGACACACTCGCACCACTTTGGCCCGAGGAATATCGACATC +
Preference number: 5 (lower is better)
Translates to: KDSSLNGFKYFVVHK*LTHSHHFGPRNIDI
Trigger: GATGTCGATATTCCTCGGGCCAAAGTGGTGCGAGTGTGTCAGGCACTTATGGACTACAAAGTATTTGAAGCCGTTCAAACTAGAGTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS GCA 72 bp GCCACACTGAAACCCGGAGGTCTCTGTGCAGGGCTGTaGAGAGCCGACAGGTTCAGCGCCGCCGCCTTCTCT +
Preference number: 6 (lower is better)
Translates to: ATLKPGGLCAGL*RADRFSAAAFS
Trigger: AGAGAAGGCGGCGGCGCTGAACCTGTCGGCTCTGCACAGCCCTGCACAGAGACCTCCGGGTTTCAGTGTGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS GCA 72 bp TGGCTTCTGGGCCACACTGAAACCCGGAGGTCTCTGTaGAGGGCTGTGCAGAGCCGACAGGTTCAGCGCCGC +
Preference number: 6 (lower is better)
Translates to: WLLGHTETRRSL*RAVQSRQVQRR
Trigger: GCGGCGCTGAACCTGTCGGCTCTGCACAGCCCTGCACAGAGACCTCCGGGTTTCAGTGTGGCCCAGAAGCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS TCA 72 bp ACACGTACGTGGCTCCGAATGGCTTCTGGGCCACACTaGAACCCGGAGGTCTCTGTGCAGGGCTGTGCAGAG +
Preference number: 6 (lower is better)
Translates to: TRTWLRMASGPH*NPEVSVQGCAE
Trigger: CTCTGCACAGCCCTGCACAGAGACCTCCGGGTTTCAGTGTGGCCCAGAAGCCATTCGGAGCCACGTACGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CCA 72 bp ATGCTGCTCCACACGTACGTGGCTCCGAATGGCTTCTaGGCCACACTGAAACCCGGAGGTCTCTGTGCAGGG +
Preference number: 6 (lower is better)
Translates to: MLLHTYVAPNGF*ATLKPGGLCAG
Trigger: CCCTGCACAGAGACCTCCGGGTTTCAGTGTGGCCCAGAAGCCATTCGGAGCCACGTACGTGTGGAGCAGCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS TCA 72 bp AGCAGCCGTCTAAACTCCTCCCTGTTCTGGGAGTCCTaGAGCTTCAGAAACAGCTGCGTGGCTTCTAACGCC +
Preference number: 6 (lower is better)
Translates to: SSRLNSSLFWES*SFRNSCVASNA
Trigger: GGCGTTAGAAGCCACGCAGCTGTTTCTGAAGCTTCAGGACTCCCAGAACAGGGAGGAGTTTAGACGGCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CCA 72 bp GTTTATAATGCTGCTCCACACGTACGTGGCTCCGAATaGCTTCTGGGCCACACTGAAACCCGGAGGTCTCTG +
Preference number: 6 (lower is better)
Translates to: VYNAAPHVRGSE*LLGHTETRRSL
Trigger: CAGAGACCTCCGGGTTTCAGTGTGGCCCAGAAGCCATTCGGAGCCACGTACGTGTGGAGCAGCATTATAAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CAA 72 bp ATGACATCCACGGCTTCCGAGCCGACGAAGCAGTCGTaGTGCCGTTTTAAGTGGTGCCTTCGCTTCTTCACT +
Preference number: 6 (lower is better)
Translates to: MTSTASEPTKQS*CRFKWCLRFFT
Trigger: AGTGAAGAAGCGAAGGCACCACTTAAAACGGCACAACGACTGCTTCGTCGGCTCGGAAGCCGTGGATGTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CCA 72 bp CAACCATCTGGTCGGGAAGGTATTCCAAGCAGTCGATaGCTGCAGAGATCCATTCATCTTCCTGAGAGTCAC +
Preference number: 6 (lower is better)
Translates to: QPSGREGIPSSR*LQRSIHLPESH
Trigger: GTGACTCTCAGGAAGATGAATGGATCTCTGCAGCCATCGACTGCTTGGAATACCTTCCCGACCAGATGGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS TCA 72 bp AAGTGGTGCCTTCGCTTCTTCACTTCCACCTGGGTTTaGAGGGTGTTTATAATGCTGCTCCACACGTACGTG +
Preference number: 6 (lower is better)
Translates to: KWCLRFFTSTWV*RVFIMLLHTYV
Trigger: CACGTACGTGTGGAGCAGCATTATAAACACCCTTCAAACCCAGGTGGAAGTGAAGAAGCGAAGGCACCACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CCA 72 bp TGCTCAGGAAAGTTCCTGCTTATATCCACAACCATCTaGTCGGGAAGGTATTCCAAGCAGTCGATGGCTGCA +
Preference number: 6 (lower is better)
Translates to: CSGKFLLISTTI*SGRYSKQSMAA
Trigger: TGCAGCCATCGACTGCTTGGAATACCTTCCCGACCAGATGGTTGTGGATATAAGCAGGAACTTTCCTGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS TCA 72 bp CACCAAAGAATTTATTCTGAGTTAAGTGGGAGTAAATaGCATCCACGGCTTCCGAGCCGACGAAGCAGTCGT +
Preference number: 6 (lower is better)
Translates to: HQRIYSELSGSK*HPRLPSRRSSR
Trigger: ACGACTGCTTCGTCGGCTCGGAAGCCGTGGATGTCATTTACTCCCACTTAACTCAGAATAAATTCTTTGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS GCA 72 bp AGTTTGAACGGCTTCAAATACTTTGTAGTCCATAAGTaGCTGACACACTCGCACCACTTTGGCCCGAGGAAT +
Preference number: 6 (lower is better)
Translates to: SLNGFKYFVVHK*LTHSHHFGPRN
Trigger: ATTCCTCGGGCCAAAGTGGTGCGAGTGTGTCAGGCACTTATGGACTACAAAGTATTTGAAGCCGTTCAAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CAA 72 bp CTCAGGTTCTCCCACAGGTCCTCCAAACTGTCCGACTaGATATCAGATGACATAAACGATGCATCTGAGTAC +
Preference number: 6 (lower is better)
Translates to: LRFSHRSSKLSD*ISDDINDASEY
Trigger: GTACTCAGATGCATCGTTTATGTCATCTGATATCAAGTCGGACAGTTTGGAGGACCTGTGGGAGAACCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CAA 72 bp TCCAATCGTCTCCTCTTGCCATACTTCATTGATAACTaGAGGAGAGAGCCTGGTAGAGATATGTATGTGAGG +
Preference number: 6 (lower is better)
Translates to: SNRLLLPYFIDN*RREPGRDMYVR
Trigger: CCTCACATACATATCTCTACCAGGCTCTCTCCTCAAGTTATCAATGAAGTATGGCAAGAGGAGACGATTGGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CAA 90 bp GCTATCTTCAAATGTAGGCTTCTTGTCCTTTCCAAAGACTCTAGTTaGAACGGCTTCAAATACTTTGTAGTCCATAAGTGCCTGACACAC +
Preference number: 6 (lower is better)
Translates to: AIFKCRLLVLSKDSS*NGFKYFVVHKCLTH
Trigger: GTGTGTCAGGCACTTATGGACTACAAAGTATTTGAAGCCGTTCAAACTAGAGTCTTTGGAAAGGACAAGAAGCCTACATTTGAAGATAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8
CDS CAA 72 bp AAATGTAGGCTTCTTGTCCTTTCCAAAGACTCTAGTTaGAACGGCTTCAAATACTTTGTAGTCCATAAGTGC +
Preference number: 6 (lower is better)
Translates to: KCRLLVLSKDSS*NGFKYFVVHKC
Trigger: GCACTTATGGACTACAAAGTATTTGAAGCCGTTCAAACTAGAGTCTTTGGAAAGGACAAGAAGCCTACATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028595.8