Pregenerated sensors for DEPDC1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028175Ensembl transcript IDs: ENSMUST00000029825.14, ENSMUST00000106041.3, ENSMUST00000120272.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTCATTCCACAGCTTGGTaGCCCGGTAAGGTCCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCHSTAW*PGKVQE Trigger: CTCTTGGACCTTACCGGGCCACCAAGCTGTGGAATG...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATACATTCCACAGCTTGGTaGCCCGGTAAGGTCCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCIHSTAW*PGKVQE Trigger: CTCTTGGACCTTACCGGGCCACCAAGCTGTGGAATG...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATACTTCATTCCACAGCTTaGTGGCCCGGTAAGGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCILHSTA*WPGKVQ Trigger: TTGGACCTTACCGGGCCACCAAGCTGTGGAATGAAG...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR GCA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTAGTATGACCACTCCATaGTTACTTGTGTTGGCCATG | + |
|
Preference number: 4 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCSMTTP*LLVLAM Trigger: CATGGCCAACACAAGTAAGCATGGAGTGGTCATACT...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATAGGGGTGTCTGTTTaGGTGCAGACACTAACGATT | + |
|
Preference number: 4 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCIGVSV*VQTLTI Trigger: AATCGTTAGTGTCTGCACCCAAACAGACACCCCTAT...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTCTTTGTAAAGCAGACTaGGAAGAAGACACTCAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCLCKAD*EEDTQL Trigger: CAACTGAGTGTCTTCTTCTCAGTCTGCTTTACAAAG...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTGGACTTCTTTTCACTTaGATTCACTGGCCTATCTAC | + |
|
Preference number: 4 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCGLLFT*IHWPIY Trigger: GTAGATAGGCCAGTGAATTCAAGTGAAAAGAAGTCC...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTGCATTTTCATCTGAGTaGAGATTAAATAGGGGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCAFSSE*RLNRGV Trigger: GACACCCCTATTTAATCTTCACTCAGATGAAAATGC...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATGCGCATTAAGAGTTaGAGCTTTCTACGATTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCMRIKS*SFLRFG Trigger: ACCAAATCGTAGAAAGCTTCAACTCTTAATGCGCAT...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR GCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATAAGTATGACCACTCCATaGTTACTTGTGTTGGCCATG | + |
|
Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCISMTTP*LLVLAM Trigger: CATGGCCAACACAAGTAAGCATGGAGTGGTCATACT...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTGGAAATCTGAATAGTTaGTTGTTGTCATCAAGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCGNLNS*LLSSRL Trigger: AAGCCTTGATGACAACAATCAACTATTCAGATTTCC...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATAGGACTTCTTTTCACTTaGATTCACTGGCCTATCTAC | + |
|
Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCIGLLFT*IHWPIY Trigger: GTAGATAGGCCAGTGAATTCAAGTGAAAAGAAGTCC...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTGTACCTATTTGTTCATaGAGTTTGGGCATATCAACA | + |
|
Preference number: 4 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCVPICS*SLGIST Trigger: TGTTGATATGCCCAAACTTCATGAACAAATAGGTAC...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTACTAGTCCATCTCCATaGTTTTTAACATTGCCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCTSPSP*FLTLPF Trigger: AAAGGGCAATGTTAAAAATCATGGAGATGGACTAGT...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCCTTCATTCCACAGCTTaGTGGCCCGGTAAGGTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: GTYNINSVLLSRNSLMYGLHSTA*WPGKVQ Trigger: TTGGACCTTACCGGGCCACCAAGCTGTGGAATGAAG...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATACAAAGAAGAGCACCTTaGTTTGATGTTAGAGGACAG | + |
|
Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCIQRRAP*FDVRGQ Trigger: CTGTCCTCTAACATCAAACCAAGGTGCTCTTCTTTG...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATAAAAACCAACACAGTGTaGCTGCTGAGCATTTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCIKTNTV*LLSIFI Trigger: GATGAAAATGCTCAGCAGCCACACTGTGTTGGTTTT...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATAGCAGACTGTGAAGCTTaGGGTTTCTTAAATTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCIADCEA*GFLNSA Trigger: TGCTGAATTTAAGAAACCCCAAGCTTCACAGTCTGC...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR GCA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTGCAGACACTAACGATTaGTTACTATTTTGTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCADTND*LLFCSS Trigger: AGAAGAACAAAATAGTAAGCAATCGTTAGTGTCTGC...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATATCCTGGCTTATTTCTTaGTTGTCAGGTGCAATTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCISWLIS*LSGAIS Trigger: AGAAATTGCACCTGACAACCAAGAAATAAGCCAGGA...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATAATCCCCATCTACCTTTaGTATCTTCAATCACATGAT | + |
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Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCIIPIYL*YLQSHD Trigger: ATCATGTGATTGAAGATATCAAAGGTAGATGGGGAT...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATACTGTGTTGGTTTTCTTaGTTTCTGTATGTCTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCILCWFS*FLYVFV Trigger: CACAAAGACATACAGAAATCAAGAAAACCAACACAG...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATAACTAGTCCATCTCCATaGTTTTTAACATTGCCCTTT | + |
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Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCITSPSP*FLTLPF Trigger: AAAGGGCAATGTTAAAAATCATGGAGATGGACTAGT...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR GCA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATAGCAGACACTAACGATTaGTTACTATTTTGTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SSFSSLAQIKTVLSPPCIADTND*LLFCSS Trigger: AGAAGAACAAAATAGTAAGCAATCGTTAGTGTCTGC...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCCAAAGAAGAGCACCTTaGTTTGATGTTAGAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: GTYNINSVLLSRNSLMYGQRRAP*FDVRGQ Trigger: CTGTCCTCTAACATCAAACCAAGGTGCTCTTCTTTG...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCAAAACCAACACAGTGTaGCTGCTGAGCATTTTCATC | + |
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Preference number: 4 (lower is better) Translates to: GTYNINSVLLSRNSLMYGKTNTV*LLSIFI Trigger: GATGAAAATGCTCAGCAGCCACACTGTGTTGGTTTT...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCGCAGACTGTGAAGCTTaGGGTTTCTTAAATTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GTYNINSVLLSRNSLMYGADCEA*GFLNSA Trigger: TGCTGAATTTAAGAAACCCCAAGCTTCACAGTCTGC...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCGCATTTTCATCTGAGTaGAGATTAAATAGGGGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: GTYNINSVLLSRNSLMYGAFSSE*RLNRGV Trigger: GACACCCCTATTTAATCTTCACTCAGATGAAAATGC...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCATGCGCATTAAGAGTTaGAGCTTTCTACGATTTGGT | + |
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Preference number: 4 (lower is better) Translates to: GTYNINSVLLSRNSLMYGMRIKS*SFLRFG Trigger: ACCAAATCGTAGAAAGCTTCAACTCTTAATGCGCAT...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCTCCTGGCTTATTTCTTaGTTGTCAGGTGCAATTTCT | + |
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Preference number: 4 (lower is better) Translates to: GTYNINSVLLSRNSLMYGSWLIS*LSGAIS Trigger: AGAAATTGCACCTGACAACCAAGAAATAAGCCAGGA...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCATCCCCATCTACCTTTaGTATCTTCAATCACATGAT | + |
|
Preference number: 4 (lower is better) Translates to: GTYNINSVLLSRNSLMYGIPIYL*YLQSHD Trigger: ATCATGTGATTGAAGATATCAAAGGTAGATGGGGAT...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCGGAAATCTGAATAGTTaGTTGTTGTCATCAAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: GTYNINSVLLSRNSLMYGGNLNS*LLSSRL Trigger: AAGCCTTGATGACAACAATCAACTATTCAGATTTCC...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR TCA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCGTACCTATTTGTTCATaGAGTTTGGGCATATCAACA | + |
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Preference number: 4 (lower is better) Translates to: GTYNINSVLLSRNSLMYGVPICS*SLGIST Trigger: TGTTGATATGCCCAAACTTCATGAACAAATAGGTAC...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CCA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCTACCATCTTTGTCTTTaGAAAAGTACTCTGTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: GTYNINSVLLSRNSLMYGYHLCL*KSTLCW Trigger: CCAACACAGAGTACTTTTCCAAAGACAAAGATGGTA...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTTTCCTGGCTTATTTCTaGGTTGTCAGGTGCAATTTC | + |
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Preference number: 5 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCFLAYF*VVRCNF Trigger: GAAATTGCACCTGACAACCAAGAAATAAGCCAGGAA...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTTGGCTTATTTCTTGGTaGTCAGGTGCAATTTCTAGA | + |
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Preference number: 5 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCWLISW*SGAISR Trigger: TCTAGAAATTGCACCTGACAACCAAGAAATAAGCCA...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTTGGACTTCTTTTCACTaGAATTCACTGGCCTATCTA | + |
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Preference number: 5 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCWTSFH*NSLAYL Trigger: TAGATAGGCCAGTGAATTCAAGTGAAAAGAAGTCCA...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATACCATCTTTGTCTTaGGAAAAGTACTCTGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCIPSLS*EKYSVL Trigger: CAACACAGAGTACTTTTCCAAAGACAAAGATGGTAT...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTTACAGTAAGAATATGTaGGCAAAGGAACAACTAGTC | + |
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Preference number: 5 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCYSKNM*AKEQLV Trigger: GACTAGTTGTTCCTTTGCCAACATATTCTTACTGTA...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | TCCAGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTTTGCAGCTTGGGAAGTaGAAATTTTCTGTTCATCAA | + |
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Preference number: 5 (lower is better) Translates to: SSSFSSLAQIKTVLSPPCLQLGK*KFSVHQ Trigger: TTGATGAACAGAAAATTTCAACTTCCCAAGCTGCAA...ACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATATGGCTTATTTCTTGGTaGTCAGGTGCAATTTCTAGA | + |
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Preference number: 5 (lower is better) Translates to: SSFSSLAQIKTVLSPPCIWLISW*SGAISR Trigger: TCTAGAAATTGCACCTGACAACCAAGAAATAAGCCA...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATAATACCATCTTTGTCTTaGGAAAAGTACTCTGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: SSFSSLAQIKTVLSPPCIIPSLS*EKYSVL Trigger: CAACACAGAGTACTTTTCCAAAGACAAAGATGGTAT...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATATACAGTAAGAATATGTaGGCAAAGGAACAACTAGTC | + |
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Preference number: 5 (lower is better) Translates to: SSFSSLAQIKTVLSPPCIYSKNM*AKEQLV Trigger: GACTAGTTGTTCCTTTGCCAACATATTCTTACTGTA...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | AGTAGCTTTAGCAGCCTCGCACAGATAAAGACTGTTTTGTCACCTCCTTGTATATTGCAGCTTGGGAAGTaGAAATTTTCTGTTCATCAA | + |
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Preference number: 5 (lower is better) Translates to: SSFSSLAQIKTVLSPPCILQLGK*KFSVHQ Trigger: TTGATGAACAGAAAATTTCAACTTCCCAAGCTGCAA...TATACAAGGAGGTGACAAAACAGTCTTTATCTGTGCGAGGCTGCTAAAGCTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCTTCCTGGCTTATTTCTaGGTTGTCAGGTGCAATTTC | + |
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Preference number: 5 (lower is better) Translates to: GTYNINSVLLSRNSLMYGFLAYF*VVRCNF Trigger: GAAATTGCACCTGACAACCAAGAAATAAGCCAGGAA...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCATACCATCTTTGTCTTaGGAAAAGTACTCTGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: GTYNINSVLLSRNSLMYGIPSLS*EKYSVL Trigger: CAACACAGAGTACTTTTCCAAAGACAAAGATGGTAT...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS-3UTR CAA 90 bp | GGAACCTATAATATCAACAGTGTTCTTTTAAGTAGAAATAGTCTCATGTACGGCTACAGTAAGAATATGTaGGCAAAGGAACAACTAGTC | + |
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Preference number: 5 (lower is better) Translates to: GTYNINSVLLSRNSLMYGYSKNM*AKEQLV Trigger: GACTAGTTGTTCCTTTGCCAACATATTCTTACTGTA...GCCGTACATGAGACTATTTCTACTTAAAAGAACACTGTTGATATTATAGGTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029825.14 ENSMUST00000106041.3 ENSMUST00000120272.8 |
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| CDS TCA 72 bp | GACTTATACTTTTCATTACATAACTCTTCTTGGTCTTaGACAGTCAAAGCAGAGGTTCTGTTAAAACCAACA | + |
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Preference number: 6 (lower is better) Translates to: DLYFSLHNSSWS*TVKAEVLLKPT Trigger: TGTTGGTTTTAACAGAACCTCTGCTTTGACTGTTCAAGACCAAGAAGAGTTATGTAATGAAAAGTATAAGTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029825.14 ENSMUST00000120272.8 |
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