Pregenerated sensors for DENR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023106Ensembl transcript IDs: ENSMUST00000023869.15
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGCACCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGAAATTGAACTCAGGTCCTCTGGAAGAGCAGTCAGTGCTC | + |
|
Preference number: 1 (lower is better) Translates to: RAPDLITDGCEPPCG*WKLNSGPLEEQSVL Trigger: GAGCACTGACTGCTCTTCCAGAGGACCTGAGTTCAATTTCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGGTGCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR TCA 90 bp | ATTGAACTCAGGTCCTCTGGAAGAGCAGTCAGTGCTCTTAACCTCTaGGCCATCTCTGTAGCCCTTAACTTCACATCTTTATTACACATT | + |
|
Preference number: 1 (lower is better) Translates to: IELRSSGRAVSALNL*AISVALNFTSLLHI Trigger: AATGTGTAATAAAGATGTGAAGTTAAGGGCTACAGAGATGGCTCAGAGGTTAAGAGCACTGACTGCTCTTCCAGAGGACCTGAGTTCAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR-3UTR GCA 90 bp | GTCAGAAGAGGGCACCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTACAGAGAAGTGCCAGTaGTTGCCCAGCATGCACGAG | + |
|
Preference number: 2 (lower is better) Translates to: VRRGHQISLQMVVSHHVVTEKCQ*LPSMHE Trigger: CTCGTGCATGCTGGGCAAGCACTGGCACTTCTCTGT...AACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGGTGCCCTCTTCTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR-3UTR GCA 90 bp | GGGTTCACTGACAGCACTGAGTGGAGGGACAATCTAGAGTGTTTTTCTAAAAATGAAAGGCCTCTCCTCTaGTGGCCGTGTCAGCTCTCA | + |
|
Preference number: 2 (lower is better) Translates to: GFTDSTEWRDNLECFSKNERPLL*WPCQLS Trigger: TGAGAGCTGACACGGCCAGCAGAGGAGAGGCCTTTC...ATTTTTAGAAAAACACTCTAGATTGTCCCTCCACTCAGTGCTGTCAGTGAACCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR-3UTR TCA 90 bp | GTCAGAAGAGGGCACCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTAGACAAATTCTTCTGTaGAGTTTGCTCAGCTCTCTA | + |
|
Preference number: 2 (lower is better) Translates to: VRRGHQISLQMVVSHHVVRQILL*SLLSSL Trigger: TAGAGAGCTGAGCAAACTTCACAGAAGAATTTGTCT...AACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGGTGCCCTCTTCTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR-3UTR CCA 90 bp | ACAGTGTTCTGCATATATATCTGCATGTCAGAAGAGGGCACCAGATCTCATTACACTGACAGCACTGAGTaGAGGGACAATCTAGAGTGT | + |
|
Preference number: 2 (lower is better) Translates to: TVFCIYICMSEEGTRSHYTDSTE*RDNLEC Trigger: ACACTCTAGATTGTCCCTCCACTCAGTGCTGTCAGT...GTAATGAGATCTGGTGCCCTCTTCTGACATGCAGATATATATGCAGAACACTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR-3UTR TCA 90 bp | ACAGTGTTCTGCATATATATCTGCATGTCAGAAGAGGGCACCAGATCTCATTACCATATGTATATATTCTaGAAGGCCTCTCCTCTGCTG | + |
|
Preference number: 2 (lower is better) Translates to: TVFCIYICMSEEGTRSHYHMYIF*KASPLL Trigger: CAGCAGAGGAGAGGCCTTTCAGAATATATACATATG...GTAATGAGATCTGGTGCCCTCTTCTGACATGCAGATATATATGCAGAACACTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR CAA 90 bp | CAAGGAAGGATGTTTTCACATAATGATTTCGTGGACTCTACATTCTaGAAGGAATCTTTAACAACTTGTGTTTGTGACGCTACAAGCATG | + |
|
Preference number: 2 (lower is better) Translates to: QGRMFSHNDFVDSTF*KESLTTCVCDATSM Trigger: CATGCTTGTAGCGTCACAAACACAAGTTGTTAAAGATTCCTTCAAGAATGTAGAGTCCACGAAATCATTATGTGAAAACATCCTTCCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR GCA 72 bp | GCTAACCAACAGAAACTTCCCACAGAGAAGTGCCAGTaGTTGCCCAGCATGCACGAGGCCCTGGGTTCACTG | + |
|
Preference number: 3 (lower is better) Translates to: ANQQKLPTEKCQ*LPSMHEALGSL Trigger: CAGTGAACCCAGGGCCTCGTGCATGCTGGGCAAGCACTGGCACTTCTCTGTGGGAAGTTTCTGTTGGTTAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR-3UTR CAA 90 bp | GGTTCTAAGGCGTTTAACACACTGTACCAAGTAATCTCCAAACAGCTTGAGCAAGAGAAGTGCCAGTGCTaGCCCAGCATGCACGAGGCC | + |
|
Preference number: 3 (lower is better) Translates to: GSKAFNTLYQVISKQLEQEKCQC*PSMHEA Trigger: GGCCTCGTGCATGCTGGGCAAGCACTGGCACTTCTC...TTGCTCAAGCTGTTTGGAGATTACTTGGTACAGTGTGTTAAACGCCTTAGAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR TCA 72 bp | TCAGAAGAGGGCACCAGATCTCATTACAGATGGTTGTaGGCCACCATGTGGTTGCTGGAAATTGAACTCAGG | + |
|
Preference number: 3 (lower is better) Translates to: SEEGTRSHYRWL*ATMWLLEIELR Trigger: CCTGAGTTCAATTTCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGGTGCCCTCTTCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR GCA 72 bp | GATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGAAATTGAACTCAGGTCCTCTGGAAGAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: DLITDGCEPPCG*WKLNSGPLEEQ Trigger: CTGCTCTTCCAGAGGACCTGAGTTCAATTTCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR CCA 72 bp | CTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGAAATTGAACTCAGGTCCTCTGGAAGAGCAGTCA | + |
|
Preference number: 3 (lower is better) Translates to: LITDGCEPPCGC*KLNSGPLEEQS Trigger: TGACTGCTCTTCCAGAGGACCTGAGTTCAATTTCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR CAA 72 bp | AACCAACAGAAACTTCCCACAGAGAAGTGCCAGTGCTaGCCCAGCATGCACGAGGCCCTGGGTTCACTGACA | + |
|
Preference number: 4 (lower is better) Translates to: NQQKLPTEKCQC*PSMHEALGSLT Trigger: TGTCAGTGAACCCAGGGCCTCGTGCATGCTGGGCAAGCACTGGCACTTCTCTGTGGGAAGTTTCTGTTGGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| CDS-3UTR TCA 90 bp | GTCATGCATAAGCATGACAGTCTCTCTCTCTCTCTCACTTTTCAGACTTTGGCAGTCCTCCCCTGTCACTaGGGCACCGCACGAGAATTT | + |
|
Preference number: 4 (lower is better) Translates to: VMHKHDSLSLSLTFQTLAVLPCH*GTAREF Trigger: AAATTCTCGTGCGGTGCCTCAGTGACAGGGGAGGAC...TGCCAAAGTCTGAAAAGTGAGAGAGAGAGAGAGACTGTCATGCTTATGCATGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| CDS-3UTR TCA 90 bp | GGTTCTAAGGCGTTTAACACACTGTACCAAGTAATCTCCAAACAGCTTGAGCAATCTGTGAAGTCTCCCTaGATGATGATCTCGTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GSKAFNTLYQVISKQLEQSVKSP*MMISSS Trigger: GGAGGACGAGATCATCATTCAGGGAGACTTCACAGA...TTGCTCAAGCTGTTTGGAGATTACTTGGTACAGTGTGTTAAACGCCTTAGAACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| CDS-3UTR GCA 90 bp | GGTTCTAAGGCGTTTAACACACTGTACCAAGTAATCTCCAAACAGCTTGAGCAACTCCAAGGTCTTCAATaGTGTCGTCATCCACCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: GSKAFNTLYQVISKQLEQLQGLQ*CRHPPL Trigger: CAGAGGTGGATGACGACAGCATTGAAGACCTTGGAG...TTGCTCAAGCTGTTTGGAGATTACTTGGTACAGTGTGTTAAACGCCTTAGAACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| CDS-3UTR CCA 90 bp | GTCATGCATAAGCATGACAGTCTCTCTCTCTCTCTCACTTTTCAGACTTTGGCATCCCCTACTGGTCCTTaGCCTTCAGTAATTCCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: VMHKHDSLSLSLTFQTLASPTGP*PSVIPV Trigger: AACTGGAATTACTGAAGGCCAAGGACCAGTAGGGGA...TGCCAAAGTCTGAAAAGTGAGAGAGAGAGAGAGACTGTCATGCTTATGCATGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR CAA 72 bp | TTGCCTGGCACCCTCATCCATGAGTTGTATCAGGACTaGCCCTTAGCTTATGATAGTGTTGAAGTGGTTTAC | + |
|
Preference number: 4 (lower is better) Translates to: LPGTLIHELYQD*PLAYDSVEVVY Trigger: GTAAACCACTTCAACACTATCATAAGCTAAGGGCAAGTCCTGATACAACTCATGGATGAGGGTGCCAGGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| CDS-3UTR TCA 90 bp | GGTTCTAAGGCGTTTAACACACTGTACCAAGTAATCTCCAAACAGCTTGAGCAATCTGGCCACTTTTCCTaGATGACGTCAATGATGTCA | + |
|
Preference number: 4 (lower is better) Translates to: GSKAFNTLYQVISKQLEQSGHFS*MTSMMS Trigger: TGACATCATTGACGTCATTCAGGAAAAGTGGCCAGA...TTGCTCAAGCTGTTTGGAGATTACTTGGTACAGTGTGTTAAACGCCTTAGAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| CDS-3UTR CCA 90 bp | GGTTCTAAGGCGTTTAACACACTGTACCAAGTAATCTCCAAACAGCTTGAGCAAAATCCGCATCTAACTTaGCACTGTTCTTCGTATCGC | + |
|
Preference number: 4 (lower is better) Translates to: GSKAFNTLYQVISKQLEQNPHLT*HCSSYR Trigger: GCGATACGAAGAACAGTGCCAAGTTAGATGCGGATT...TTGCTCAAGCTGTTTGGAGATTACTTGGTACAGTGTGTTAAACGCCTTAGAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR CAA 72 bp | AACATTGTAACATTGCCTGGCACCCTCATCCATGAGTaGTATCAGGACTTGCCCTTAGCTTATGATAGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: NIVTLPGTLIHE*YQDLPLAYDSV Trigger: AACACTATCATAAGCTAAGGGCAAGTCCTGATACAACTCATGGATGAGGGTGCCAGGCAATGTTACAATGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR CAA 72 bp | CAGTCTGTACTATTTATAAGCTCCAACATTGTAACATaGCCTGGCACCCTCATCCATGAGTTGTATCAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: QSVLFISSNIVT*PGTLIHELYQD Trigger: GTCCTGATACAACTCATGGATGAGGGTGCCAGGCAATGTTACAATGTTGGAGCTTATAAATAGTACAGACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| 3UTR CAA 72 bp | ATGTTTTCACATAATGATTTCGTGGACTCTACATTCTaGAAGGAATCTTTAACAACTTGTGTTTGTGACGCT | + |
|
Preference number: 4 (lower is better) Translates to: MFSHNDFVDSTF*KESLTTCVCDA Trigger: AGCGTCACAAACACAAGTTGTTAAAGATTCCTTCAAGAATGTAGAGTCCACGAAATCATTATGTGAAAACAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| CDS-3UTR CAA 90 bp | GTCATGCATAAGCATGACAGTCTCTCTCTCTCTCTCACTTTTCAGACTTTGGCATTCCCCTACTGGTCCTaGGCCTTCAGTAATTCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: VMHKHDSLSLSLTFQTLAFPYWS*AFSNSS Trigger: ACTGGAATTACTGAAGGCCAAGGACCAGTAGGGGAA...TGCCAAAGTCTGAAAAGTGAGAGAGAGAGAGAGACTGTCATGCTTATGCATGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||
| CDS-3UTR CAA 90 bp | GTCATGCATAAGCATGACAGTCTCTCTCTCTCTCTCACTTTTCAGACTTTGGCAGTTTTGCAAATTCATTaGGAAAGTTCTTCTCTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: VMHKHDSLSLSLTFQTLAVLQIH*ESSSLA Trigger: GGCTAGAGAAGAACTTTCCAAATGAATTTGCAAAAC...TGCCAAAGTCTGAAAAGTGAGAGAGAGAGAGAGACTGTCATGCTTATGCATGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023869.15 |
||