RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DENND5B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030313

Ensembl transcript IDs: ENSMUST00000111557.8, ENSMUST00000127727.2

Found 318 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTGCCTTGTCTGCAGAGTGGAGACTGTTCAAACTGGGGCTTCCAGTaGACTGCCCCGGCAGTGCTCACTATGGTCAGACCGGTCCAGATA +
Preference number: 1 (lower is better)
Translates to: LPCLQSGDCSNWGFQ*TAPAVLTMVRPVQI
Trigger: TATCTGGACCGGTCTGACCATAGTGAGCACTGCCGGGGCAGTGCACTGGAAGCCCCAGTTTGAACAGTCTCCACTCTGCAGACAAGGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 90 bp TCCAGTAAACAGGAAAACAGCACTGCTGGCAAGAGCCCAGGGCCCTaGGATTGCACACGGATCCTGAGAGGCCATGGCTTGGGTTTTCAG +
Preference number: 1 (lower is better)
Translates to: SSKQENSTAGKSPGP*DCTRILRGHGLGFQ
Trigger: CTGAAAACCCAAGCCATGGCCTCTCAGGATCCGTGTGCAATCTCAGGGCCCTGGGCTCTTGCCAGCAGTGCTGTTTTCCTGTTTACTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 90 bp CAATACAGCACTTTGCCTTGTCTGCAGAGTGGAGACTGTTCAAACTaGGGCTTCCAGTGCACTGCCCCGGCAGTGCTCACTATGGTCAGA +
Preference number: 1 (lower is better)
Translates to: QYSTLPCLQSGDCSN*GFQCTAPAVLTMVR
Trigger: TCTGACCATAGTGAGCACTGCCGGGGCAGTGCACTGGAAGCCCCAGTTTGAACAGTCTCCACTCTGCAGACAAGGCAAAGTGCTGTATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 90 bp GGGAAACAGGGTCAAGTCAGGGGTCTTCACTTGTTCCTGGCAGCCTaGTTTCTGACTCACAACCCTACCTCACATGGAGAAGCTCAGTCA +
Preference number: 1 (lower is better)
Translates to: GKQGQVRGLHLFLAA*FLTHNPTSHGEAQS
Trigger: TGACTGAGCTTCTCCATGTGAGGTAGGGTTGTGAGTCAGAAAGCAGGCTGCCAGGAACAAGTGAAGACCCCTGACTTGACCCTGTTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 90 bp TTTCAGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGACTaGTCATCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGC +
Preference number: 1 (lower is better)
Translates to: FQAGEMAQRLRALTD*SSRGPEFNSQQPHG
Trigger: GCCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGATGAGCAGTCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCTGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 90 bp AGGATGGGACTCCAGGAGGGATGGCTGCTTCAGGACAAAGCATTCTaGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGGT +
Preference number: 1 (lower is better)
Translates to: RMGLQEGWLLQDKAF*FLCETWREKEAFLG
Trigger: ACCCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGTCCTGAAGCAGCCATCCCTCCTGGAGTCCCATCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 90 bp GGGGGATGGGGCGGACAGAGGGAGTGGCTGGAACCTAACAAAGACTaGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGT +
Preference number: 1 (lower is better)
Translates to: GGWGGQREWLEPNKD*AGSLAPLKEFRWPS
Trigger: ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTTAGGTTCCAGCCACTCCCTCTGTCCGCCCCATCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 90 bp CCAGGAGGGATGGCTGCTTCAGGACAAAGCATTCTGGTTCCTTTGTaGGACCTGGAGGGAAAAAGAAGCCTTCCTGGGTTGCACTATGTA +
Preference number: 1 (lower is better)
Translates to: PGGMAASGQSILVPL*DLEGKRSLPGLHYV
Trigger: TACATAGTGCAACCCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGTCCTGAAGCAGCCATCCCTCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 90 bp ATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTTTGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACT +
Preference number: 1 (lower is better)
Translates to: ISLRMVVSHHVVAGI*TLDLWKSSRVLLPT
Trigger: AGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 90 bp AGGGTCAAGTCAGGGGTCTTCACTTGTTCCTGGCAGCCTGCTTTCTaGCTCACAACCCTACCTCACATGGAGAAGCTCAGTCATTGTGAA +
Preference number: 1 (lower is better)
Translates to: RVKSGVFTCSWQPAF*LTTLPHMEKLSHCE
Trigger: TTCACAATGACTGAGCTTCTCCATGTGAGGTAGGGTTGTGAGTCAGAAAGCAGGCTGCCAGGAACAAGTGAAGACCCCTGACTTGACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 90 bp TGGTTGCTGGGATTTGAACTTTGGACCTTTGGAAGAGCAGTCGGGTaGTCTTACCCACTGAGCCATCTCACCAGCCCAAAGTACTTCCTT +
Preference number: 1 (lower is better)
Translates to: WLLGFELWTFGRAVG*SYPLSHLTSPKYFL
Trigger: AAGGAAGTACTTTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAAAGTTCAAATCCCAGCAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 90 bp AAGCTGTATACATTCACCACACACAGGATGGGACTCCAGGAGGGATaGCTGCTTCAGGACAAAGCATTCTGGTTCCTTTGTGAGACCTGG +
Preference number: 1 (lower is better)
Translates to: KLYTFTTHRMGLQEG*LLQDKAFWFLCETW
Trigger: CCAGGTCTCACAAAGGAACCAGAATGCTTTGTCCTGAAGCAGCCATCCCTCCTGGAGTCCCATCCTGTGTGTGGTGAATGTATACAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 90 bp GAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTTTGGACCTTTGGAAGAGCAGTCGGGTGCTCTT +
Preference number: 1 (lower is better)
Translates to: ESDLVTDGCEPPCGC*DLNFGPLEEQSGAL
Trigger: AAGAGCACCCGACTGCTCTTCCAAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 90 bp AGAAGAGTTCATCCGATCCTCTGGAACTGTAGTAATAGGTGGGTGTaGGGTACCATGTGGGTGCTGGCAATGAACCTGGGTCTTCTGCAA +
Preference number: 1 (lower is better)
Translates to: RRVHPILWNCSNRWV*GTMWVLAMNLGLLQ
Trigger: TTGCAGAAGACCCAGGTTCATTGCCAGCACCCACATGGTACCTCACACCCACCTATTACTACAGTTCCAGAGGATCGGATGAACTCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 90 bp TCAGACATTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTaGGCCACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTTGGA +
Preference number: 1 (lower is better)
Translates to: SDIPEEGVRSRYGWL*ATMWLLGFELWTFG
Trigger: TCCAAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCTGGAATGTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 90 bp GGATGGCTGCTTCAGGACAAAGCATTCTGGTTCCTTTGTGAGACCTaGAGGGAAAAAGAAGCCTTCCTGGGTTGCACTATGTACACATTT +
Preference number: 1 (lower is better)
Translates to: GWLLQDKAFWFLCET*REKEAFLGCTMYTF
Trigger: AAATGTGTACATAGTGCAACCCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGTCCTGAAGCAGCCATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 90 bp AGGGCTTCTTGTGTTTGCTTTCCAATTAGCCAAGCTCTTGGGATCTaGTATTTGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT +
Preference number: 1 (lower is better)
Translates to: RASCVCFPISQALGI*YLRSLSLSLSLSLS
Trigger: AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCAAATACCAGATCCCAAGAGCTTGGCTAATTGGAAAGCAAACACAAGAAGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 90 bp GAGAAAGAAACAAAGATTTCTAAAGACACTGATGCTTGCCAGGTGTaGTGGTGTATGCCTTTGATTCCAGCACTTGGGAGGCAAAGGCAG +
Preference number: 1 (lower is better)
Translates to: EKETKISKDTDACQV*WCMPLIPALGRQRQ
Trigger: CTGCCTTTGCCTCCCAAGTGCTGGAATCAAAGGCATACACCACCACACCTGGCAAGCATCAGTGTCTTTAGAAATCTTTGTTTCTTTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 90 bp GGCAATGAACCTGGGTCTTCTGCAAGAGCAGCCAGTGCTCTTAACTaGTTAGCTACCTCTCCTTGCCAATTTAACTTTAGTTACTACGTA +
Preference number: 1 (lower is better)
Translates to: GNEPGSSARAASALN*LATSPCQFNFSYYV
Trigger: TACGTAGTAACTAAAGTTAAATTGGCAAGGAGAGGTAGCTAAGCAGTTAAGAGCACTGGCTGCTCTTGCAGAAGACCCAGGTTCATTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 90 bp ACCTGGAGCTCTGCCGAGGCAATTTTGCTACTAACAAGGTATCGGTaGCTAATTAGAGTTCCGAAACTTACTCACCAAAAGATAAAGATT +
Preference number: 1 (lower is better)
Translates to: TWSSAEAILLLTRYR*LIRVPKLTHQKIKI
Trigger: AATCTTTATCTTTTGGTGAGTAAGTTTCGGAACTCTAATTAGGCACCGATACCTTGTTAGTAGCAAAATTGCCTCGGCAGAGCTCCAGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 90 bp CCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCACAGTaGCTTTTAACTTCTCTGGGACAATTGCTTTACATTTCCCTGAAA +
Preference number: 1 (lower is better)
Translates to: PKLSLESNSLLSLPQ*LLTSLGQLLYISLK
Trigger: TTTCAGGGAAATGTAAAGCAATTGTCCCAGAGAAGTTAAAAGCCACTGTGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 90 bp GACAGAACCCAAGGTTTTGTATTTACTACACAGGCATTCTACCACTaGGCTACATCCCCAGCCACTGCACATTTAATAAGATATTTAAAA +
Preference number: 1 (lower is better)
Translates to: DRTQGFVFTTQAFYH*ATSPATAHLIRYLK
Trigger: TTTTAAATATCTTATTAAATGTGCAGTGGCTGGGGATGTAGCTCAGTGGTAGAATGCCTGTGTAGTAAATACAAAACCTTGGGTTCTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 90 bp GTCTGTTTGTTTTTAAATAGCACAGCACGAAGGATGCCTGTTGTATaGTCCTTACAGAAGTCAGCTTGTACGATTATATGCATCTGTTTT +
Preference number: 1 (lower is better)
Translates to: VCLFLNSTARRMPVV*SLQKSACTIICICF
Trigger: AAAACAGATGCATATAATCGTACAAGCTGACTTCTGTAAGGACCATACAACAGGCATCCTTCGTGCTGTGCTATTTAAAAACAAACAGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 90 bp GATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTTTGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCAC +
Preference number: 2 (lower is better)
Translates to: DLVTDGCEPPCGCWD*NFGPLEEQSGALTH
Trigger: GTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATACGCTCAGCATCAGGATaGCCCCATGGGAAAAGACAG +
Preference number: 2 (lower is better)
Translates to: STSNTELTPAPPWMPFIIRSASG*PHGKRQ
Trigger: CTGTCTTTTCCCATGGGGCCATCCTGATGCTGAGCG...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR GCA 90 bp CTAGAAAGGTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAAACTGGGGCTTCCAGTaGACTGCCCCGGCAGTGCTC +
Preference number: 2 (lower is better)
Translates to: LERFQEFLNCLLSQIHSSNWGFQ*TAPAVL
Trigger: GAGCACTGCCGGGGCAGTGCACTGGAAGCCCCAGTT...TGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAACCTTTCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR GCA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAAGGTCTGCAACTCAGATaGACCTGCCCCTGCCTCCCT +
Preference number: 2 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKGLQLR*TCPCLP
Trigger: AGGGAGGCAGGGGCAGGTGCATCTGAGTTGCAGACC...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTGGCTGTACTTGCTGTTaGGACTCAACTGTGGAACAC +
Preference number: 2 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVGCTCC*DSTVEH
Trigger: GTGTTCCACAGTTGAGTCCCAACAGCAAGTACAGCC...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATAGGAGGCAAAGGCAGGTaGATGTCTGTGAGTTCAAGG +
Preference number: 2 (lower is better)
Translates to: STSNTELTPAPPWMPFIIGGKGR*MSVSSR
Trigger: CCTTGAACTCACAGACATCCACCTGCCTTTGCCTCC...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 90 bp TGCTTCTCAGGGCTTCTTGTGTTTGCTTTCCAATTAGCCAAGCTCTaGGGATCTGGTATTTGCGCTCTCTCTCTCTCTCTCTCTCTCTCT +
Preference number: 2 (lower is better)
Translates to: CFSGLLVFAFQLAKL*GSGICALSLSLSLS
Trigger: AGAGAGAGAGAGAGAGAGAGAGAGAGCGCAAATACCAGATCCCAAGAGCTTGGCTAATTGGAAAGCAAACACAAGAAGCCCTGAGAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTCAGGACAAAGCATTCTaGTTCCTTTGTGAGACCTGG +
Preference number: 2 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVQDKAF*FLCETW
Trigger: CCAGGTCTCACAAAGGAACCAGAATGCTTTGTCCTG...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTGGACTCCAGGAGGGATaGCTGCTTCAGGACAAAGCA +
Preference number: 2 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSGLQEG*LLQDKA
Trigger: TGCTTTGTCCTGAAGCAGCCATCCCTCCTGGAGTCC...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCGGAAAACAGCACTGCTaGCAAGAGCCCAGGGCCCTG +
Preference number: 2 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSGKQHC*QEPRAL
Trigger: CAGGGCCCTGGGCTCTTGCCAGCAGTGCTGTTTTCC...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATAGCTTGCCAGGTGTGGTaGTGTATGCCTTTGATTCCA +
Preference number: 2 (lower is better)
Translates to: STSNTELTPAPPWMPFIIACQVW*CMPLIP
Trigger: TGGAATCAAAGGCATACACCACCACACCTGGCAAGC...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR TCA 90 bp GGATCCAACACACAAGTAATTGGACCAAGCAAGCATGGCTACTTCCTAAATCACCATTCCAAATCACACTaGGACCTCCTCCTTCTCCCA +
Preference number: 2 (lower is better)
Translates to: GSNTQVIGPSKHGYFLNHHSKSH*DLLLLP
Trigger: TGGGAGAAGGAGGAGGTCTCAGTGTGATTTGGAATG...GTGATTTAGGAAGTAGCCATGCTTGCTTGGTCCAATTACTTGTGTGTTGGATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR GCA 90 bp CATAGCTTCCTATCTGTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGACAGGAAAACAGCACTaGTGGCAAGAGCCCAGGGCC +
Preference number: 2 (lower is better)
Translates to: HSFLSVQLTEDSTEEMILTGKQH*WQEPRA
Trigger: GGCCCTGGGCTCTTGCCAGCAGTGCTGTTTTCCTGT...CAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTTTCCTTTGTGAGACCTaGAGGGAAAAAGAAGCCTTC +
Preference number: 2 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVFLCET*REKEAF
Trigger: GAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAA...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp CATAGCTTCCTATCTGTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGTCACCACACACAGGATaGGACTCCAGGAGGGATGGC +
Preference number: 2 (lower is better)
Translates to: HSFLSVQLTEDSTEEMILSPHTG*DSRRDG
Trigger: GCCATCCCTCCTGGAGTCCCATCCTGTGTGTGGTGA...CAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATACTCAGTCTGCCACAGTaGCTTTTAACTTCTCTGGGA +
Preference number: 2 (lower is better)
Translates to: STSNTELTPAPPWMPFIILSLPQ*LLTSLG
Trigger: TCCCAGAGAAGTTAAAAGCCACTGTGGCAGACTGAG...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp GGATCCAACACACAAGTAATTGGACCAAGCAAGCATGGCTACTTCCTAAATCACCTATGTAGCTCTGTCTaGTCTGCAACTCAGATGCAC +
Preference number: 2 (lower is better)
Translates to: GSNTQVIGPSKHGYFLNHLCSSV*SATQMH
Trigger: GTGCATCTGAGTTGCAGACCAGACAGAGCTACATAG...GTGATTTAGGAAGTAGCCATGCTTGCTTGGTCCAATTACTTGTGTGTTGGATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp GGATCCAACACACAAGTAATTGGACCAAGCAAGCATGGCTACTTCCTAAATCACACAGGGAATAAAACCTaGAGCTCTGCCGAGGCAATT +
Preference number: 2 (lower is better)
Translates to: GSNTQVIGPSKHGYFLNHTGNKT*SSAEAI
Trigger: AATTGCCTCGGCAGAGCTCCAGGTTTTATTCCCTGT...GTGATTTAGGAAGTAGCCATGCTTGCTTGGTCCAATTACTTGTGTGTTGGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTGTTGGGACTCAACTGTaGAACACTGACTTAAAAGTC +
Preference number: 2 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVVGTQL*NTDLKV
Trigger: GACTTTTAAGTCAGTGTTCCACAGTTGAGTCCCAAC...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 90 bp TCAGCTACAACAGGGAATAAAACCTGGAGCTCTGCCGAGGCAATTTaGCTACTAACAAGGTATCGGTGCCTAATTAGAGTTCCGAAACTT +
Preference number: 2 (lower is better)
Translates to: SATTGNKTWSSAEAI*LLTRYRCLIRVPKL
Trigger: AAGTTTCGGAACTCTAATTAGGCACCGATACCTTGTTAGTAGCAAAATTGCCTCGGCAGAGCTCCAGGTTTTATTCCCTGTTGTAGCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR TCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTTGGCAGCCTGCTTTCTaGCTCACAACCCTACCTCAC +
Preference number: 2 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSWQPAF*LTTLPH
Trigger: GTGAGGTAGGGTTGTGAGTCAGAAAGCAGGCTGCCA...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR GCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGCAACTCAGATGCACCTaGCCCTGCCTCCCTAGTGCT +
Preference number: 2 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLQLRCT*PCLPSA
Trigger: AGCACTAGGGAGGCAGGGGCAGGTGCATCTGAGTTG...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR GCA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTTTGGGATCTGGTATTTaGGCTCTCTCTCTCTCTCTC +
Preference number: 2 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSLGSGI*ALSLSL
Trigger: GAGAGAGAGAGAGAGAGCGCAAATACCAGATCCCAA...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR TCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTTTACTGGCTTCTTCCTaGCTAGCACCGCTTTCCCCA +
Preference number: 2 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSLLASS*LAPLSP
Trigger: TGGGGAAAGCGGTGCTAGTCAGGAAGAAGCCAGTAA...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR TCA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAAGGTTGGTCTATAGAGTaGATTCTAGGACAGCCAAGG +
Preference number: 2 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKGWSIE*ILGQPR
Trigger: CCTTGGCTGTCCTAGAATTCACTCTATAGACCAACC...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAAGATGCTTGCCAGGTGTaGTGGTGTATGCCTTTGATT +
Preference number: 2 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKDACQV*WCMPLI
Trigger: AATCAAAGGCATACACCACCACACCTGGCAAGCATC...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp GGATCCAACACACAAGTAATTGGACCAAGCAAGCATGGCTACTTCCTAAATCACTTTATTTTCTTTTGCTaGAGTGCTGCTCAGGGCCTT +
Preference number: 2 (lower is better)
Translates to: GSNTQVIGPSKHGYFLNHFIFFC*SAAQGL
Trigger: AAGGCCCTGAGCAGCACTCCAGCAAAAGAAAATAAA...GTGATTTAGGAAGTAGCCATGCTTGCTTGGTCCAATTACTTGTGTGTTGGATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR TCA 90 bp GGATCCAACACACAAGTAATTGGACCAAGCAAGCATGGCTACTTCCTAAATCACGAAGCTCAGTCATTGTaGAGTACTAAAGTACTTCCT +
Preference number: 2 (lower is better)
Translates to: GSNTQVIGPSKHGYFLNHEAQSL*STKVLP
Trigger: AGGAAGTACTTTAGTACTTCACAATGACTGAGCTTC...GTGATTTAGGAAGTAGCCATGCTTGCTTGGTCCAATTACTTGTGTGTTGGATCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR GCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTGCCAGTGCTCTTAACTaGTTAGCTACCTCTCCTTGC +
Preference number: 2 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSASALN*LATSPC
Trigger: GCAAGGAGAGGTAGCTAAGCAGTTAAGAGCACTGGC...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR GCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCTACAATACAGCACTTTaGCTTGTCTGCAGAGTGGAG +
Preference number: 2 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSYNTAL*LVCRVE
Trigger: CTCCACTCTGCAGACAAGGCAAAGTGCTGTATTGTA...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR GCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGTCCAGGAGGGATGGCTaGTTCAGGACAAAGCATTCT +
Preference number: 2 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLSRRDG*FRTKHS
Trigger: AGAATGCTTTGTCCTGAAGCAGCCATCCCTCCTGGA...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR GCA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATAGCTTGTACGATTATATaGATCTGTTTTGAGCAATGT +
Preference number: 2 (lower is better)
Translates to: STSNTELTPAPPWMPFIIACTII*ICFEQC
Trigger: ACATTGCTCAAAACAGATGCATATAATCGTACAAGC...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTGCCACTATGCCTTGCTaGGGTCTGATATTTAAAATA +
Preference number: 2 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSATMPC*GLIFKI
Trigger: TATTTTAAATATCAGACCCCAGCAAGGCATAGTGGC...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR TCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTGCCAGGGATATACAGTaGGATCCTGTTTCACAAACA +
Preference number: 2 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSARDIQ*DPVSQT
Trigger: TGTTTGTGAAACAGGATCTCACTGTATATCCCTGGC...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR GCA 90 bp CATAGCTTCCTATCTGTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGGGCTTCTTGTGTTTaGTTTCCAATTAGCCAAGCT +
Preference number: 2 (lower is better)
Translates to: HSFLSVQLTEDSTEEMILRASCV*FPISQA
Trigger: AGCTTGGCTAATTGGAAAGCAAACACAAGAAGCCCT...CAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTGAACCTAACAAAGACTaGGCTGGTAGTTTAGCTCCA +
Preference number: 2 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSEPNKD*AGSLAP
Trigger: TGGAGCTAAACTACCAGCCCAGTCTTTGTTAGGTTC...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR TCA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAATTTTCACCTATAAAATaGAGAGGCTGTACTTGCTGT +
Preference number: 2 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKFSPIK*RGCTCC
Trigger: ACAGCAAGTACAGCCTCTTCATTTTATAGGTGAAAA...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR GCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGGTTGAGATAGGGTCTTaGTATGTAGCTCTGTCTGGT +
Preference number: 2 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLVEIGS*YVALSG
Trigger: ACCAGACAGAGCTACATAGCAAGACCCTATCTCAAC...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR TCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTCAATTTTATTTGTGCTaGGGACAGAACCCAAGGTTT +
Preference number: 2 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSQFYLC*GQNPRF
Trigger: AAACCTTGGGTTCTGTCCTCAGCACAAATAAAATTG...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp CTTAAAAGGTACAATGAGGACTGCTGTACACTATGTAAAGCTGTATACATTCACAAAAAGAAGCCTTCCTaGGTTGCACTATGTACACAT +
Preference number: 2 (lower is better)
Translates to: LKRYNEDCCTLCKAVYIHKKKPS*VALCTH
Trigger: ATGTGTACATAGTGCAACCCAGGAAGGCTTCTTTTT...GTGAATGTATACAGCTTTACATAGTGTACAGCAGTCCTCATTGTACCTTTTAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CCA 90 bp CATAGCTTCCTATCTGTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGACAGCAATAAAACCCTaGGATGGACTGTATCTTAAT +
Preference number: 2 (lower is better)
Translates to: HSFLSVQLTEDSTEEMILTAIKP*DGLYLN
Trigger: ATTAAGATACAGTCCATCCCAGGGTTTTATTGCTGT...CAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 90 bp CCTTATTATTCTGCATCACAGAAACATAGCTTCCTATCTGTACAGTaGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTC +
Preference number: 2 (lower is better)
Translates to: PYYSASQKHSFLSVQ*TEDSTEEMILSKNV
Trigger: GACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATGTTTCTGTGATGCAGAATAATAAGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 72 bp GCTCTGTCTGGTCTGCAACTCAGATGCACCTGCCCCTaGCTCCCTAGTGCTGGGAGTGCGCCACTATGCCTT +
Preference number: 3 (lower is better)
Translates to: ALSGLQLRCTCP*LPSAGSAPLCL
Trigger: AAGGCATAGTGGCGCACTCCCAGCACTAGGGAGGCAGGGGCAGGTGCATCTGAGTTGCAGACCAGACAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 72 bp CAGGAAAACAGCACTGCTGGCAAGAGCCCAGGGCCCTaGGATTGCACACGGATCCTGAGAGGCCATGGCTTG +
Preference number: 3 (lower is better)
Translates to: QENSTAGKSPGP*DCTRILRGHGL
Trigger: CAAGCCATGGCCTCTCAGGATCCGTGTGCAATCTCAGGGCCCTGGGCTCTTGCCAGCAGTGCTGTTTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 72 bp CGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTTTGGACCTTTGGAAGAGCAGTCGGGTGCTC +
Preference number: 3 (lower is better)
Translates to: RMVVSHHVVAGI*TLDLWKSSRVL
Trigger: GAGCACCCGACTGCTCTTCCAAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 72 bp GGAGGTAGATCTCTCCAGGTGAGCCTGGTCTACAAATaGAGTTCCAGGGCCAGCCAGGGATATACAGTGAGA +
Preference number: 3 (lower is better)
Translates to: GGRSLQVSLVYK*SSRASQGYTVR
Trigger: TCTCACTGTATATCCCTGGCTGGCCCTGGAACTTCATTTGTAGACCAGGCTCACCTGGAGAGATCTACCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 72 bp GGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTaGGCCATCTCACCAGCCCAAAGTACTTCCTTCTTA +
Preference number: 3 (lower is better)
Translates to: GPLEEQSGALTH*AISPAQSTSFL
Trigger: TAAGAAGGAAGTACTTTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 72 bp TCACCACACACAGGATGGGACTCCAGGAGGGATGGCTaGTTCAGGACAAAGCATTCTGGTTCCTTTGTGAGA +
Preference number: 3 (lower is better)
Translates to: SPHTGWDSRRDG*FRTKHSGSFVR
Trigger: TCTCACAAAGGAACCAGAATGCTTTGTCCTGAAGCAGCCATCCCTCCTGGAGTCCCATCCTGTGTGTGGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 72 bp GGTCAAGTCAGGGGTCTTCACTTGTTCCTGGCAGCCTaGTTTCTGACTCACAACCCTACCTCACATGGAGAA +
Preference number: 3 (lower is better)
Translates to: GQVRGLHLFLAA*FLTHNPTSHGE
Trigger: TTCTCCATGTGAGGTAGGGTTGTGAGTCAGAAAGCAGGCTGCCAGGAACAAGTGAAGACCCCTGACTTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 72 bp GGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGACTaGTCATCCAGAGGTCCTGAGTTCAATTCCCAGCAA +
Preference number: 3 (lower is better)
Translates to: GEMAQRLRALTD*SSRGPEFNSQQ
Trigger: TTGCTGGGAATTGAACTCAGGACCTCTGGATGAGCAGTCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 72 bp CTCCAGGAGGGATGGCTGCTTCAGGACAAAGCATTCTaGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCC +
Preference number: 3 (lower is better)
Translates to: LQEGWLLQDKAF*FLCETWREKEA
Trigger: GGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGTCCTGAAGCAGCCATCCCTCCTGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 72 bp ACATTCACCACACACAGGATGGGACTCCAGGAGGGATaGCTGCTTCAGGACAAAGCATTCTGGTTCCTTTGT +
Preference number: 3 (lower is better)
Translates to: TFTTHRMGLQEG*LLQDKAFWFLC
Trigger: ACAAAGGAACCAGAATGCTTTGTCCTGAAGCAGCCATCCCTCCTGGAGTCCCATCCTGTGTGTGGTGAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 72 bp CTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTTTGGACCTTTGGAAGAGCAGTCG +
Preference number: 3 (lower is better)
Translates to: LVTDGCEPPCGC*DLNFGPLEEQS
Trigger: CGACTGCTCTTCCAAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CAA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAACCCAGGGCCCTGAGATaGCACACGGATCCTGAGAGG +
Preference number: 3 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKPRALR*HTDPER
Trigger: CCTCTCAGGATCCGTGTGCAATCTCAGGGCCCTGGG...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 72 bp ATGGCTGCTTCAGGACAAAGCATTCTGGTTCCTTTGTaGGACCTGGAGGGAAAAAGAAGCCTTCCTGGGTTG +
Preference number: 3 (lower is better)
Translates to: MAASGQSILVPL*DLEGKRSLPGL
Trigger: CAACCCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGTCCTGAAGCAGCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 72 bp GATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTTTGGACCTTTGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: DLVTDGCEPPCG*WDLNFGPLEEQ
Trigger: CTGCTCTTCCAAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 72 bp GGCGGACAGAGGGAGTGGCTGGAACCTAACAAAGACTaGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGA +
Preference number: 3 (lower is better)
Translates to: GGQREWLEPNKD*AGSLAPLKEFR
Trigger: TCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTTAGGTTCCAGCCACTCCCTCTGTCCGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 72 bp GAGATTAAGAACAGTTTGGTAGGCAGGGCTCTCACATaGATCCCTCACTTAGGAGGTAGATCTCTCCAGGTG +
Preference number: 3 (lower is better)
Translates to: EIKNSLVGRALT*IPHLGGRSLQV
Trigger: CACCTGGAGAGATCTACCTCCTAAGTGAGGGATTCATGTGAGAGCCCTGCCTACCAAACTGTTCTTAATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 72 bp TCTCTCTCTCTCTCTCTCTCTGTTGAGATAGGGTCTTaGTATGTAGCTCTGTCTGGTCTGCAACTCAGATGC +
Preference number: 3 (lower is better)
Translates to: SLSLSLSVEIGS*YVALSGLQLRC
Trigger: GCATCTGAGTTGCAGACCAGACAGAGCTACATAGCAAGACCCTATCTCAACAGAGAGAGAGAGAGAGAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 72 bp AATGAAGAGGCTGTACTTGCTGTTGGGACTCAACTGTaGAACACTGACTTAAAAGTCCACCAAGCGCTCAGC +
Preference number: 3 (lower is better)
Translates to: NEEAVLAVGTQL*NTDLKVHQALS
Trigger: GCTGAGCGCTTGGTGGACTTTTAAGTCAGTGTTCCACAGTTGAGTCCCAACAGCAAGTACAGCCTCTTCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CAA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTCTACAATACAGCACTTaGCCTTGTCTGCAGAGTGGA +
Preference number: 3 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVLQYST*PCLQSG
Trigger: TCCACTCTGCAGACAAGGCAAAGTGCTGTATTGTAG...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CAA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATACACGAAGGATGCCTGTaGTATGGTCCTTACAGAAGT +
Preference number: 3 (lower is better)
Translates to: STSNTELTPAPPWMPFIIHEGCL*YGPYRS
Trigger: ACTTCTGTAAGGACCATACAACAGGCATCCTTCGTG...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 72 bp CATGAGAGTTTTGCCTACACGAATGTATGTTCACTATaGTGGGTGCCCAAGGTGGTTAGAAGAGTTCATCCG +
Preference number: 3 (lower is better)
Translates to: HESFAYTNVCSL*WVPKVVRRVHP
Trigger: CGGATGAACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGCAAAACTCTCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 72 bp GAGAGTTTTGCCTACACGAATGTATGTTCACTATGCTaGGTGCCCAAGGTGGTTAGAAGAGTTCATCCGATC +
Preference number: 3 (lower is better)
Translates to: ESFAYTNVCSLC*VPKVVRRVHPI
Trigger: GATCGGATGAACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGCAAAACTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 72 bp ACAAAGATTTCTAAAGACACTGATGCTTGCCAGGTGTaGTGGTGTATGCCTTTGATTCCAGCACTTGGGAGG +
Preference number: 3 (lower is better)
Translates to: TKISKDTDACQV*WCMPLIPALGR
Trigger: CCTCCCAAGTGCTGGAATCAAAGGCATACACCACCACACCTGGCAAGCATCAGTGTCTTTAGAAATCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CAA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTAGAAGCCTTCCTGGGTaGCACTATGTACACATTTAC +
Preference number: 3 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSRSLPG*HYVHIY
Trigger: GTAAATGTGTACATAGTGCAACCCAGGAAGGCTTCT...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 72 bp TCTGCCGAGGCAATTTTGCTACTAACAAGGTATCGGTaGCTAATTAGAGTTCCGAAACTTACTCACCAAAAG +
Preference number: 3 (lower is better)
Translates to: SAEAILLLTRYR*LIRVPKLTHQK
Trigger: CTTTTGGTGAGTAAGTTTCGGAACTCTAATTAGGCACCGATACCTTGTTAGTAGCAAAATTGCCTCGGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 72 bp TCTCTTGAGTCAAATTCACTCCTCAGTCTGCCACAGTaGCTTTTAACTTCTCTGGGACAATTGCTTTACATT +
Preference number: 3 (lower is better)
Translates to: SLESNSLLSLPQ*LLTSLGQLLYI
Trigger: AATGTAAAGCAATTGTCCCAGAGAAGTTAAAAGCCACTGTGGCAGACTGAGGAGTGAATTTGACTCAAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CAA 90 bp GGATCCAACACACAAGTAATTGGACCAAGCAAGCATGGCTACTTCCTAAATCACTTCCTAAATTGTCTCTaGAGTCAAATTCACTCCTCA +
Preference number: 3 (lower is better)
Translates to: GSNTQVIGPSKHGYFLNHFLNCL*SQIHSS
Trigger: TGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAA...GTGATTTAGGAAGTAGCCATGCTTGCTTGGTCCAATTACTTGTGTGTTGGATCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CAA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGTCTGCCGAGGCAATTTaGCTACTAACAAGGTATCGG +
Preference number: 3 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLSAEAI*LLTRYR
Trigger: CCGATACCTTGTTAGTAGCAAAATTGCCTCGGCAGA...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 72 bp TTTTTAAATAGCACAGCACGAAGGATGCCTGTTGTATaGTCCTTACAGAAGTCAGCTTGTACGATTATATGC +
Preference number: 3 (lower is better)
Translates to: FLNSTARRMPVV*SLQKSACTIIC
Trigger: GCATATAATCGTACAAGCTGACTTCTGTAAGGACCATACAACAGGCATCCTTCGTGCTGTGCTATTTAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR-3UTR CAA 90 bp CATAGCTTCCTATCTGTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGACTTCTCTGGGACAATaGCTTTACATTTCCCTGAAA +
Preference number: 3 (lower is better)
Translates to: HSFLSVQLTEDSTEEMILTSLGQ*LYISLK
Trigger: TTTCAGGGAAATGTAAAGCAATTGTCCCAGAGAAGT...CAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 72 bp ATCTCACCAGCCCAAAGTACTTCCTTCTTAAAGCATTaGGAGCTTTTCACATATAATATGCAAGCCACTGTA +
Preference number: 3 (lower is better)
Translates to: ISPAQSTSFLKH*ELFTYNMQATV
Trigger: TACAGTGGCTTGCATATTATATGTGAAAAGCTCTCAATGCTTTAAGAAGGAAGTACTTTGGGCTGGTGAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 72 bp GTATGGTCCTTACAGAAGTCAGCTTGTACGATTATATaGATCTGTTTTGAGCAATGTTACCATTGTGATGCA +
Preference number: 3 (lower is better)
Translates to: VWSLQKSACTII*ICFEQCYHCDA
Trigger: TGCATCACAATGGTAACATTGCTCAAAACAGATGCATATAATCGTACAAGCTGACTTCTGTAAGGACCATAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR GCA 72 bp GAGATATGTAATAACATCTCTAATAAGCTTCTGCTCTaGAGGCATACATGCAGCCAGAATGATGTACACATA +
Preference number: 3 (lower is better)
Translates to: EICNNISNKLLL*RHTCSQNDVHI
Trigger: TATGTGTACATCATTCTGGCTGCATGTATGCCTGCAGAGCAGAAGCTTATTAGAGATGTTATTACATATCTC
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CCA 72 bp GCAATAAAACCCTGGGATGGACTGTATCTTAATTTGTaGATGTTTCCTATAGTAAGTAGATTGGTCTCTAGA +
Preference number: 3 (lower is better)
Translates to: AIKPWDGLYLNL*MFPIVSRLVSR
Trigger: TCTAGAGACCAATCTACTTACTATAGGAAACATCCACAAATTAAGATACAGTCCATCCCAGGGTTTTATTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR TCA 72 bp TATGCAAGCCACTGTAAGGCCACCAGAAATGTGACATaGAGGTTAAGATTAGAGATTTTATTACTCAAAACA +
Preference number: 3 (lower is better)
Translates to: YASHCKATRNVT*RLRLEILLLKT
Trigger: TGTTTTGAGTAATAAAATCTCTAATCTTAACCTTCATGTCACATTTCTGGTGGCCTTACAGTGGCTTGCATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 72 bp TCCCAGGGGAAACAGGGTCAAGTCAGGGGTCTTCACTaGTTCCTGGCAGCCTGCTTTCTGACTCACAACCCT +
Preference number: 4 (lower is better)
Translates to: SQGKQGQVRGLH*FLAACFLTHNP
Trigger: AGGGTTGTGAGTCAGAAAGCAGGCTGCCAGGAACAAGTGAAGACCCCTGACTTGACCCTGTTTCCCCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 72 bp ACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTTTGGACCTTTGGAAGAGCAGTCGGGTGCT +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCGCWD*NFGPLEEQSGA
Trigger: AGCACCCGACTGCTCTTCCAAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTGGATCTGTCCAGCATTaGGTTTGGCAGGCTTTCCCG +
Preference number: 4 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVGSVQH*VWQAFP
Trigger: CGGGAAAGCCTGCCAAACCCAATGCTGGACAGATCC...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp CACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTCATCCGATCCTCTGGAACTCCAGTGAGTCCATACTaGAAGAGGATGAAGCGTACA +
Preference number: 4 (lower is better)
Translates to: HYAGCPRWLEEFIRSSGTPVSPY*KRMKRT
Trigger: TGTACGCTTCATCCTCTTGCAGTATGGACTCACTGG...AGTTCCAGAGGATCGGATGAACTCTTCTAACCACCTTGGGCACCCAGCATAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTGGTGGAGTCCGACACTaGTTTCCCAGGTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVGGVRH*FPRSSS
Trigger: AGATGAAGACCTGGGAAAGCAGTGTCGGACTCCACC...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATAGTCGTGGGAGATTTCTaGTGTGGTGGAGTCCGACAC +
Preference number: 4 (lower is better)
Translates to: STSNTELTPAPPWMPFIIVVGDF*CGGVRH
Trigger: GTGTCGGACTCCACCACAGCAGAAATCTCCCACGAC...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTGGGAGATTTCTGCTGTaGTGGAGTCCGACACTGCTT +
Preference number: 4 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVGRFLL*WSPTLL
Trigger: AAGCAGTGTCGGACTCCACCACAGCAGAAATCTCCC...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp CACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTCATCCGATCCTCTGGAACTTACACACTGCTGTACTaGTCAGCATTATGCATCTGG +
Preference number: 4 (lower is better)
Translates to: HYAGCPRWLEEFIRSSGTYTLLY*SALCIW
Trigger: CCAGATGCATAATGCTGAGCAGTACAGCAGTGTGTA...AGTTCCAGAGGATCGGATGAACTCTTCTAACCACCTTGGGCACCCAGCATAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp CACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTCATCCGATCCTCTGGAACTGGTACAGTGTCTGCATaGCTGTACAGATTTGCTTAC +
Preference number: 4 (lower is better)
Translates to: HYAGCPRWLEEFIRSSGTGTVSA*LYRFAY
Trigger: GTAAGCAAATCTGTACAGCCATGCAGACACTGTACC...AGTTCCAGAGGATCGGATGAACTCTTCTAACCACCTTGGGCACCCAGCATAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp ACAAAGCATTCTGGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGTTGACCAGTAAGCCGTaGCTCCATATCCTCTCCAGT +
Preference number: 4 (lower is better)
Translates to: TKHSGSFVRPGGKKKPSWLTSKP*LHILSS
Trigger: ACTGGAGAGGATATGGAGCCACGGCTTACTGGTCAA...CCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp ACAAAGCATTCTGGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGCATACTGCAAGAGGATaGAGCGTACACACTGCTGTA +
Preference number: 4 (lower is better)
Translates to: TKHSGSFVRPGGKKKPSWHTARG*SVHTAV
Trigger: TACAGCAGTGTGTACGCTTCATCCTCTTGCAGTATG...CCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTCTCGCAGCTGTACATTaGGCTGGGAGTCCCTCAAGT +
Preference number: 4 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSLAAVH*AGSPSS
Trigger: ACTTGAGGGACTCCCAGCTCAATGTACAGCTGCGAG...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp CATAGCTTCCTATCTGTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGCAGACTTCCCCTGCTTaGCCAGTAAGCCGTGGCTCC +
Preference number: 4 (lower is better)
Translates to: HSFLSVQLTEDSTEEMILQTSPA*PVSRGS
Trigger: GGAGCCACGGCTTACTGGTCAAGCAGGGGAAGTCTG...CAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GGATCCAACACACAAGTAATTGGACCAAGCAAGCATGGCTACTTCCTAAATCACTGTGGTAATGCCTTCTaGCACTGTCATCAGGCGCTG +
Preference number: 4 (lower is better)
Translates to: GSNTQVIGPSKHGYFLNHCGNAF*HCHQAL
Trigger: CAGCGCCTGATGACAGTGGCAGAAGGCATTACCACA...GTGATTTAGGAAGTAGCCATGCTTGCTTGGTCCAATTACTTGTGTGTTGGATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCAGCATCTGTTCCCGGTTaGTCAGCCAGGACTCCATGT +
Preference number: 4 (lower is better)
Translates to: VSGVPKLSLESNSLLSLPASVPG*SARTPC
Trigger: ACATGGAGTCCTGGCTGACCAACCGGGAACAGATGC...TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATAAGATTTCTGCTGTGGTaGAGTCCGACACTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: STSNTELTPAPPWMPFIIRFLLW*SPTLLS
Trigger: GGAAAGCAGTGTCGGACTCCACCACAGCAGAAATCT...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp ACAAAGCATTCTGGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGTTATCATGGCCAATCTaGACTGTAGTCAGCTTTCCC +
Preference number: 4 (lower is better)
Translates to: TKHSGSFVRPGGKKKPSWLSWPI*TVVSFP
Trigger: GGGAAAGCTGACTACAGTTCAGATTGGCCATGATAA...CCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATACTTCATACATTCGGGTaGTGGCAGGACATTCTGCTA +
Preference number: 4 (lower is better)
Translates to: STSNTELTPAPPWMPFIILHTFG*WQDILL
Trigger: TAGCAGAATGTCCTGCCATCACCCGAATGTATGAAG...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GGATCCAACACACAAGTAATTGGACCAAGCAAGCATGGCTACTTCCTAAATCACACAGCCCTTTGGGCATaGACAGCATGTTCACTGCAT +
Preference number: 4 (lower is better)
Translates to: GSNTQVIGPSKHGYFLNHTALWA*TACSLH
Trigger: ATGCAGTGAACATGCTGTGCATGCCCAAAGGGCTGT...GTGATTTAGGAAGTAGCCATGCTTGCTTGGTCCAATTACTTGTGTGTTGGATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp ACAAAGCATTCTGGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGAATTTCTTGCAGGCTTaGATGAAAGGCAGAGGTGTG +
Preference number: 4 (lower is better)
Translates to: TKHSGSFVRPGGKKKPSWNFLQA*MKGRGV
Trigger: CACACCTCTGCCTTTCATGCAAGCCTGCAAGAAATT...CCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTCTAGAATCTGGAATTTaGCGTCCTTCCCAATGTTCC +
Preference number: 4 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVLESGI*RPSQCS
Trigger: GGAACATTGGGAAGGACGGCAAATTCCAGATTCTAG...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCAGAGAGGCAGGGAGGATaGGTACATAAACATGCTGCC +
Preference number: 4 (lower is better)
Translates to: VSGVPKLSLESNSLLSLPERQGG*VHKHAA
Trigger: GGCAGCATGTTTATGTACCCATCCTCCCTGCCTCTC...TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp TTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCGAGGTTCCTGGAGGCGGGCTATaGTCTCACTGCCCTTCAGTA +
Preference number: 4 (lower is better)
Translates to: LTEDSTEEMILSKNVSEVPGGGL*SHCPSV
Trigger: TACTGAAGGGCAGTGAGACCATAGCCCGCCTCCAGG...AACCTCGGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp CATAGCTTCCTATCTGTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGCTCTTGGCAAGAGCCTaGAGGCGGGCTATGGTCTCA +
Preference number: 4 (lower is better)
Translates to: HSFLSVQLTEDSTEEMILLLARA*RRAMVS
Trigger: TGAGACCATAGCCCGCCTCCAGGCTCTTGCCAAGAG...CAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGTCACCCCAGTCCTCTTaGCAAGAGCCTGGAGGCGGG +
Preference number: 4 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLSPQSS*QEPGGG
Trigger: CCCGCCTCCAGGCTCTTGCCAAGAGGACTGGGGTGA...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTGTCCAGCATTGGGTTTaGCAGGCTTTCCCGTTAGTG +
Preference number: 4 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSVQHWV*QAFPLV
Trigger: CACTAACGGGAAAGCCTGCCAAACCCAATGCTGGAC...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp ACAAAGCATTCTGGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGCCAGAACTTTGGATTTaGATGTTCTTCTCAGAGGAC +
Preference number: 4 (lower is better)
Translates to: TKHSGSFVRPGGKKKPSWPELWI*MFFSED
Trigger: GTCCTCTGAGAAGAACATTCAAATCCAAAGTTCTGG...CCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTCTAAAAGAACACAGGTaGACACTTGCACTAGGTTCT +
Preference number: 4 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVLKEHR*TLALGS
Trigger: AGAACCTAGTGCAAGTGTTCACCTGTGTTCTTTTAG...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp ACAAAGCATTCTGGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGAAACTGCTGCATTTCTaGTATATAGATGTCCGCAGG +
Preference number: 4 (lower is better)
Translates to: TKHSGSFVRPGGKKKPSWKLLHF*YIDVRR
Trigger: CCTGCGGACATCTATATATCAGAAATGCAGCAGTTT...CCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp ACAAAGCATTCTGGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGGGGTGGATTGCAGTGTaGTCCATTTTCATCAATCTT +
Preference number: 4 (lower is better)
Translates to: TKHSGSFVRPGGKKKPSWGWIAV*SIFINL
Trigger: AAGATTGATGAAAATGGATCACACTGCAATCCACCC...CCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTAAACTGGAGCAAATGTaGCCACAAGGCAGACTTCCC +
Preference number: 4 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSKLEQM*PQGRLP
Trigger: GGGAAGTCTGCCTTGTGGTCACATTTGCTCCAGTTT...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp CTAGAAAGGTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCACGCACAGCAGCACTGTaGGGCTTCCTCTCTCTTTCT +
Preference number: 4 (lower is better)
Translates to: LERFQEFLNCLLSQIHSSRTAAL*GFLSLS
Trigger: AGAAAGAGAGAGGAAGCCTCACAGTGCTGCTGTGCG...TGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAACCTTTCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATAAGATGCGGGCAGATTTaGACCCATGATGGAAAACTT +
Preference number: 4 (lower is better)
Translates to: STSNTELTPAPPWMPFIIRCGQI*THDGKL
Trigger: AAGTTTTCCATCATGGGTTCAAATCTGCCCGCATCT...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCCACTGTGGAAGCAGGTaGTCCCTTGTTCCCAGGCAA +
Preference number: 4 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSHCGSR*SLVPRQ
Trigger: TTGCCTGGGAACAAGGGATCACCTGCTTCCACAGTG...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp ACAAAGCATTCTGGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGGCACAGCATGTTCACTaGATCTTGATCAAAAGGGTT +
Preference number: 4 (lower is better)
Translates to: TKHSGSFVRPGGKKKPSWAQHVH*ILIKRV
Trigger: AACCCTTTTGATCAAGATGCAGTGAACATGCTGTGC...CCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATAACACAGGTGAACACTTaGACTAGGTTCTCTAATCCC +
Preference number: 4 (lower is better)
Translates to: STSNTELTPAPPWMPFIITQVNT*TRFSNP
Trigger: GGGATTAGAGAACCTAGTGCAAGTGTTCACCTGTGT...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCAGGGCTATGGTCTCACTaGCCTTCAGTAGCTCATACA +
Preference number: 4 (lower is better)
Translates to: VSGVPKLSLESNSLLSLPGLWSH*PSVAHT
Trigger: TGTATGAGCTACTGAAGGGCAGTGAGACCATAGCCC...TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp CTAGAAAGGTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCACTCTTTCCTGCGCTGTaGTGTGGCACTTCGACTCAC +
Preference number: 4 (lower is better)
Translates to: LERFQEFLNCLLSQIHSSLFPAL*CGTSTH
Trigger: GTGAGTCGAAGTGCCACAGCACAGCGCAGGAAAGAG...TGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAACCTTTCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp TTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCGAGGTTAAAGAGGGAGTTCATTaGGCCCAGGCCTCTGGCAGA +
Preference number: 4 (lower is better)
Translates to: LTEDSTEEMILSKNVSEVKEGVH*AQASGR
Trigger: TCTGCCAGAGGCCTGGGCCCAATGAACTCCCTCTTT...AACCTCGGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTGGAGGAATCCCAAATTaGAGAAGAACTTCAGACAAC +
Preference number: 4 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVGGIPN*RRTSDN
Trigger: GTTGTCTGAAGTTCTTCTCCAATTTGGGATTCCTCC...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCAGCTGTACATTGAGCTaGGAGTCCCTCAAGTCGGCC +
Preference number: 4 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSSCTLS*ESLKSA
Trigger: GGCCGACTTGAGGGACTCCCAGCTCAATGTACAGCT...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCACCCAGCGATTGTTATTaGCTGGTCCTGTTGCCAAGA +
Preference number: 4 (lower is better)
Translates to: VSGVPKLSLESNSLLSLPPSDCY*LVLLPR
Trigger: TCTTGGCAACAGGACCAGCCAATAACAATCGCTGGG...TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGGGGTGGTGGCTGCTGTaGGGTAACTGCCTTGTGAAG +
Preference number: 4 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLGWWLL*GNCLVK
Trigger: CTTCACAAGGCAGTTACCTCACAGCAGCCACCACCC...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAACAGGCCTCTGGCAGATaGCAGGTTCATAAACACCAT +
Preference number: 4 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKQASGR*QVHKHH
Trigger: ATGGTGTTTATGAACCTGTCATCTGCCAGAGGCCTG...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCAGCGCTGATAATCTTGTaGGTAGAGAAGGGTCTGCAT +
Preference number: 4 (lower is better)
Translates to: VSGVPKLSLESNSLLSLPALIIL*VEKGLH
Trigger: ATGCAGACCCTTCTCTACTCACAAGATTATCAGCGC...TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp CTTAAAAGGTACAATGAGGACTGCTGTACACTATGTAAAGCTGTATACATTCACGTCTCCCAGCTCTCCTaGAACACAGATCCACGGGTT +
Preference number: 4 (lower is better)
Translates to: LKRYNEDCCTLCKAVYIHVSQLS*NTDPRV
Trigger: AACCCGTGGATCTGTGTTTCAGGAGAGCTGGGAGAC...GTGAATGTATACAGCTTTACATAGTGTACAGCAGTCCTCATTGTACCTTTTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGGGCAAGGGTGGTGGCTaGTGTGAGGTAACTGCCTTG +
Preference number: 4 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLGKGGG*CEVTAL
Trigger: CAAGGCAGTTACCTCACAGCAGCCACCACCCTTGCC...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAAAGCTGCTTGAGGTGCTaGGACAAGAGCTTCTTTTCC +
Preference number: 4 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKSCLRC*DKSFFS
Trigger: GGAAAAGAAGCTCTTGTCGCAGCACCTCAAGCAGCT...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCACAATGGAATCCACTGTaGAAGCAGGTGATCCCTTGT +
Preference number: 4 (lower is better)
Translates to: VSGVPKLSLESNSLLSLPQWNPL*KQVIPC
Trigger: ACAAGGGATCACCTGCTTCCACAGTGGATTCCATTG...TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 72 bp ACAGGGAATAAAACCTGGAGCTCTGCCGAGGCAATTTaGCTACTAACAAGGTATCGGTGCCTAATTAGAGTT +
Preference number: 4 (lower is better)
Translates to: TGNKTWSSAEAI*LLTRYRCLIRV
Trigger: AACTCTAATTAGGCACCGATACCTTGTTAGTAGCAAAATTGCCTCGGCAGAGCTCCAGGTTTTATTCCCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTAATACTACTTGCCAGTaGGTCCATACTGCAAGAGGA +
Preference number: 4 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSNTTCQ*VHTARG
Trigger: TCCTCTTGCAGTATGGACTCACTGGCAAGTAGTATT...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp CATAGCTTCCTATCTGTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGACCATAAAATTTCAGTaGCCTCCCAGGAGGCGGAAG +
Preference number: 4 (lower is better)
Translates to: HSFLSVQLTEDSTEEMILTIKFQ*PPRRRK
Trigger: CTTCCGCCTCCTGGGAGGTCACTGAAATTTTATGGT...CAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp TTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCGAGGTTCAACTGGCGAGTCTGTaGGGTGCTCTTGTTTCTCTT +
Preference number: 4 (lower is better)
Translates to: LTEDSTEEMILSKNVSEVQLASL*GALVSL
Trigger: AAGAGAAACAAGAGCACCTCACAGACTCGCCAGTTG...AACCTCGGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp TTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCGAGGTTGAACAAAACCATAGGTaGGAGAACCATCTTCCCGGG +
Preference number: 4 (lower is better)
Translates to: LTEDSTEEMILSKNVSEVEQNHR*ENHLPG
Trigger: CCCGGGAAGATGGTTCTCGCACCTATGGTTTTGTTC...AACCTCGGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCAGCAGCTGCTTGAGGTaGTGCGACAAGAGCTTCTTT +
Preference number: 4 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSSSCLR*CDKSFF
Trigger: AAAGAAGCTCTTGTCGCAGCACCTCAAGCAGCTGCT...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCATCAGCATTATGCATCTaGTACAGTGTCTGCATGGCT +
Preference number: 4 (lower is better)
Translates to: VSGVPKLSLESNSLLSLPSALCI*YSVCMA
Trigger: AGCCATGCAGACACTGTACCAGATGCATAATGCTGA...TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCAATGTTTGCTTCTCCATaGCCCAGTTCTACTGCTTCA +
Preference number: 4 (lower is better)
Translates to: VSGVPKLSLESNSLLSLPMFASP*PSSTAS
Trigger: TGAAGCAGTAGAACTGGGCCATGGAGAAGCAAACAT...TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 72 bp AAACTAGAAAGGTTTCAGGAGTTCCTAAATTGTCTCTaGAGTCAAATTCACTCCTCAGTCTGCCACAGTGGC +
Preference number: 4 (lower is better)
Translates to: KLERFQEFLNCL*SQIHSSVCHSG
Trigger: GCCACTGTGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAACCTTTCTAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp TTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCGAGGTTTGTCCGCAGGGTGGGTaGCCTTACATTATACAATCT +
Preference number: 4 (lower is better)
Translates to: LTEDSTEEMILSKNVSEVCPQGG*PYIIQS
Trigger: AGATTGTATAATGTAAGGGCACCCACCCTGCGGACA...AACCTCGGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCATGGCCCAGTTCTACTaGTTCATGTCCCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSMAQFY*FMSHLL
Trigger: GAGAAGATGGGACATGAAGCAGTAGAACTGGGCCAT...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp CATAGCTTCCTATCTGTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGGTAGGTCACACAGGCTaGCGATCAAGGTGTTTTCTT +
Preference number: 4 (lower is better)
Translates to: HSFLSVQLTEDSTEEMILVGHTG*RSRCFL
Trigger: AAGAAAACACCTTGATCGCCAGCCTGTGTGACCTAC...CAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTCTCAAGCAAGTTCTTTaGAATCTGCATTACTCCGGT +
Preference number: 4 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSLKQVL*NLHYSG
Trigger: ACCGGAGTAATGCAGATTCCAAAGAACTTGCTTGAG...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAACCGGGTAATTATAAATaGGTGGAACTGAGGCTCTTT +
Preference number: 4 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKPGNYK*VELRLF
Trigger: AAAGAGCCTCAGTTCCACTCATTTATAATTACCCGG...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp CATAGCTTCCTATCTGTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGGTCCAACGTCAGTCTTaGTCTCAGTCATGTTCTGAA +
Preference number: 4 (lower is better)
Translates to: HSFLSVQLTEDSTEEMILVQRQS*SQSCSE
Trigger: TTCAGAACATGACTGAGATCAAGACTGACGTTGGAC...CAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp CTTAAAAGGTACAATGAGGACTGCTGTACACTATGTAAAGCTGTATACATTCACAGTAGTCCACAGCGTTaGGGGAAAGCAGATGGTAAA +
Preference number: 4 (lower is better)
Translates to: LKRYNEDCCTLCKAVYIHSSPQR*GKADGK
Trigger: TTTACCATCTGCTTTCCCTCAACGCTGTGGACTACT...GTGAATGTATACAGCTTTACATAGTGTACAGCAGTCCTCATTGTACCTTTTAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp TTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCGAGGTTATCTGGTACAGTGTCTaGATGGCTGTACAGATTTGC +
Preference number: 4 (lower is better)
Translates to: LTEDSTEEMILSKNVSEVIWYSV*MAVQIC
Trigger: GCAAATCTGTACAGCCATGCAGACACTGTACCAGAT...AACCTCGGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCATCTTCTCTACCAACATaGGTTTTGTCTTCATTCTGC +
Preference number: 4 (lower is better)
Translates to: VSGVPKLSLESNSLLSLPSSLPT*VLSSFC
Trigger: GCAGAATGAAGACAAAACGCATGTTGGTAGAGAAGA...TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTCAAGCCAGTAATGTTTaGTTCTCCATGGCCCAGTTC +
Preference number: 4 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSQASNV*FSMAQF
Trigger: GAACTGGGCCATGGAGAAGCAAACATTACTGGCTTG...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp CTTAAAAGGTACAATGAGGACTGCTGTACACTATGTAAAGCTGTATACATTCACGGCGAGTCTGTGAGGTaGTCTTGTTTCTCTTCTCTA +
Preference number: 4 (lower is better)
Translates to: LKRYNEDCCTLCKAVYIHGESVR*SCFSSL
Trigger: TAGAGAAGAGAAACAAGAGCACCTCACAGACTCGCC...GTGAATGTATACAGCTTTACATAGTGTACAGCAGTCCTCATTGTACCTTTTAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCCCCAATGTTCCTGGGTaGAGTGTTAATAGCATTCAC +
Preference number: 4 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSPNVPG*SVNSIH
Trigger: GTGAATGCTATTAACACTGCACCCAGGAACATTGGG...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp CTAGAAAGGTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAAGGCAAACTAGAATCTaGAATTTGCCGTCCTTCCCA +
Preference number: 4 (lower is better)
Translates to: LERFQEFLNCLLSQIHSSRQTRI*NLPSFP
Trigger: TGGGAAGGACGGCAAATTCCAGATTCTAGTTTGCCT...TGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAACCTTTCTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTGAGTTGACAGTCATGTaGTCTCGAAGCAGTGCATTC +
Preference number: 4 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSELTVM*SRSSAF
Trigger: GAATGCACTGCTTCGAGACCACATGACTGTCAACTC...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp CTTAAAAGGTACAATGAGGACTGCTGTACACTATGTAAAGCTGTATACATTCACGAGGTAACTGCCTTGTaGAGTTGGAAGAGGAATTTC +
Preference number: 4 (lower is better)
Translates to: LKRYNEDCCTLCKAVYIHEVTAL*SWKRNF
Trigger: GAAATTCCTCTTCCAACTTCACAAGGCAGTTACCTC...GTGAATGTATACAGCTTTACATAGTGTACAGCAGTCCTCATTGTACCTTTTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTCACAAATTAGCCTCTTaGGGAAGTTCTAATTTAGAC +
Preference number: 4 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSHKLAS*GSSNLD
Trigger: GTCTAAATTAGAACTTCCTCAAGAGGCTAATTTGTG...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCTGTTTCAATGAAGCGTaGAAGAAATGGCAGGTAAGG +
Preference number: 4 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSCFNEA*KKWQVR
Trigger: CCTTACCTGCCATTTCTTTCACGCTTCATTGAAACA...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp CTAGAAAGGTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCATTCTCTTCTCTATCCTaGAACTGGAGCAAATGTGAC +
Preference number: 4 (lower is better)
Translates to: LERFQEFLNCLLSQIHSSFSSLS*NWSKCD
Trigger: GTCACATTTGCTCCAGTTTCAGGATAGAGAAGAGAA...TGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAACCTTTCTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCTTGCTTGATGGTTTCTaGATGAGCACATCACCTTCA +
Preference number: 4 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSLLDGF*MSTSPS
Trigger: TGAAGGTGATGTGCTCATTCAGAAACCATCAAGCAA...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTGCAGAAGGTTTTGCTTaGTGGTTTCTGAATGAGCAC +
Preference number: 4 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSAEGFA*WFLNEH
Trigger: GTGCTCATTCAGAAACCATCAAGCAAAACCTTCTGC...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCACACATCCACTCCTTTaGTTAGTGATCCTTCCAAGA +
Preference number: 4 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSTHPLL*LVILPR
Trigger: TCTTGGAAGGATCACTAATCAAAGGAGTGGATGTGT...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp CTAGAAAGGTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGAAAACTTGTTCAAGTaGAGCAACCAGGCCATTTTC +
Preference number: 4 (lower is better)
Translates to: LERFQEFLNCLLSQIHSSENLFK*SNQAIF
Trigger: GAAAATGGCCTGGTTGCTGCACTTGAACAAGTTTTC...TGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAACCTTTCTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAATTCAAAATAAGCCACTaGTTTCTCTACGAAGTCCCA +
Preference number: 4 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKFKISH*FLYEVP
Trigger: TGGGACTTCGTAGAGAAAGCAGTGGCTTATTTTGAA...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp GTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCACTTTGTTCAATTGACTaGGCTGCTTCTTTTAAACTG +
Preference number: 4 (lower is better)
Translates to: VSGVPKLSLESNSLLSLPLCSID*AASFKL
Trigger: CAGTTTAAAAGAAGCAGCCCAGTCAATTGAACAAAG...TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 72 bp AGCTATCAAACTAGAAAGGTTTCAGGAGTTCCTAAATaGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCA +
Preference number: 4 (lower is better)
Translates to: SYQTRKVSGVPK*SLESNSLLSLP
Trigger: TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAACCTTTCTAGTTTGATAGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 72 bp GCAATTTTATTTGTGCTGAGGACAGAACCCAAGGTTTaGTATTTACTACACAGGCATTCTACCACTGAGCTA +
Preference number: 4 (lower is better)
Translates to: AILFVLRTEPKV*YLLHRHSTTEL
Trigger: TAGCTCAGTGGTAGAATGCCTGTGTAGTAAATACAAAACCTTGGGTTCTGTCCTCAGCACAAATAAAATTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCATGTTCACTGCATCTTaGTCAAAAGGGTTCCATTCT +
Preference number: 4 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSMFTAS*SKGFHS
Trigger: AGAATGGAACCCTTTTGATCAAGATGCAGTGAACAT...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTCTTCCAAGACTATGGTaGAATCCTGAATGGTCTGAA +
Preference number: 4 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSLPRLW*NPEWSE
Trigger: TTCAGACCATTCAGGATTTCACCATAGTCTTGGAAG...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCTTTCAAAAGAGAGGTTaGATCTCCCTCGTCAATACT +
Preference number: 4 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSFQKRG*ISLVNT
Trigger: AGTATTGACGAGGGAGATGCAACCTCTCTTTTGAAA...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGGTGGTCTCGAAGCAGTaGATTCTCTTCATACATTCG +
Preference number: 4 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLVVSKQ*ILFIHS
Trigger: CGAATGTATGAAGAGAATGCACTGCTTCGAGACCAC...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGAGATTTTCTTCTTTCTaGTCCAAGGGCAACTGGCGA +
Preference number: 4 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLRFSSF*SKGNWR
Trigger: TCGCCAGTTGCCCTTGGACCAGAAAGAAGAAAATCT...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGAGCTTTCCCAGGTTCTaGCACTCAAAAGTCATCTCA +
Preference number: 4 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLSFPRF*HSKVIS
Trigger: TGAGATGACTTTTGAGTGCCAGAACCTGGGAAAGCT...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CCA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAACTAAAATCTGGTCAGTaGTTTCAAAATAAGCCACTG +
Preference number: 4 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKLKSGQ*FQNKPL
Trigger: CAGTGGCTTATTTTGAAACCACTGACCAGATTTTAG...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTACAAGGTGTCTCTGTTaGTGTCATAAGAGTTGTATC +
Preference number: 4 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSTRCLC*CHKSCI
Trigger: GATACAACTCTTATGACATCAACAGAGACACCTTGT...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTATATGCCTCATGTCTTaGATAAGAGAGACTCTGAGT +
Preference number: 4 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSICLMS*IRETLS
Trigger: ACTCAGAGTCTCTCTTATTCAAGACATGAGGCATAT...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGATGAAGACATTCTTGTaGAAGATGCGGGCAGATTTG +
Preference number: 4 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLMKTFL*KMRADL
Trigger: CAAATCTGCCCGCATCTTTCACAAGAATGTCTTCAT...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGCTACGAAGTCCCAGATaGAGACATTCTTGTGAAAGA +
Preference number: 4 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLLRSPR*RHSCER
Trigger: TCTTTCACAAGAATGTCTTCATCTGGGACTTCGTAG...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp CTTAAAAGGTACAATGAGGACTGCTGTACACTATGTAAAGCTGTATACATTCACTTGATGGTTTCTGAATaGGCACATCACCTTCATTGT +
Preference number: 4 (lower is better)
Translates to: LKRYNEDCCTLCKAVYIHLMVSE*AHHLHC
Trigger: ACAATGAAGGTGATGTGCTCATTCAGAAACCATCAA...GTGAATGTATACAGCTTTACATAGTGTACAGCAGTCCTCATTGTACCTTTTAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 72 bp ACAGCAATAAAACCCTGGGATGGACTGTATCTTAATTaGTGGATGTTTCCTATAGTAAGTAGATTGGTCTCT +
Preference number: 4 (lower is better)
Translates to: TAIKPWDGLYLN*WMFPIVSRLVS
Trigger: AGAGACCAATCTACTTACTATAGGAAACATCCACAAATTAAGATACAGTCCATCCCAGGGTTTTATTGCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR TCA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTCAAGCAGATACTTTTTaGAACATACAAGGTGTCTCT +
Preference number: 4 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSQADTF*NIQGVS
Trigger: AGAGACACCTTGTATGTTTCAAAAAGTATCTGCTTG...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp TTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCGAGGTTACCCTTGCTCATATTTaGCTTGACCAATTTTCATAT +
Preference number: 4 (lower is better)
Translates to: LTEDSTEEMILSKNVSEVTLAHI*LDQFSY
Trigger: ATATGAAAATTGGTCAAGGCAAATATGAGCAAGGGT...AACCTCGGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCGTTCGAGGTAATGATTaGATTGCTCAGCTTTTTAAT +
Preference number: 4 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSVRGND*IAQLFN
Trigger: ATTAAAAAGCTGAGCAATGCAATCATTACCTCGAAC...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 72 bp TACAGAAGTCAGCTTGTACGATTATATGCATCTGTTTaGAGCAATGTTACCATTGTGATGCATTTCCCATAT +
Preference number: 4 (lower is better)
Translates to: YRSQLVRLYASV*SNVTIVMHFPY
Trigger: ATATGGGAAATGCATCACAATGGTAACATTGCTCAAAACAGATGCATATAATCGTACAAGCTGACTTCTGTA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
3UTR CAA 72 bp TTTGAGCAATGTTACCATTGTGATGCATTTCCCATATaGATTCAGTTTGTTATAGGTCACATAAGAAGCCTT +
Preference number: 4 (lower is better)
Translates to: FEQCYHCDAFPI*IQFVIGHIRSL
Trigger: AAGGCTTCTTATGTGACCTATAACAAACTGAATCAATATGGGAAATGCATCACAATGGTAACATTGCTCAAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR GCA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGATGGCTGTACAGATTTaGTTACTTGTAACTTCTTCA +
Preference number: 4 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLMAVQI*LLVTSS
Trigger: TGAAGAAGTTACAAGTAAGCAAATCTGTACAGCCAT...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp CCCAATGTGTTCAGAGCTCTGGCGAAGGCGCTCTTTCCTGCGCTGTaGTGTGGCACTTCGACTCACCCAGCGATTGTTATTGGCTGGTCC +
Preference number: 5 (lower is better)
Translates to: PNVFRALAKALFPAL*CGTSTHPAIVIGWS
Trigger: GGACCAGCCAATAACAATCGCTGGGTGAGTCGAAGTGCCACAGCACAGCGCAGGAAAGAGCGCCTTCGCCAGAGCTCTGAACACATTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp TGTCCAGCCCAATGTGTTCAGAGCTCTGGCGAAGGCGCTCTTTCCTaGGCTGTGCTGTGGCACTTCGACTCACCCAGCGATTGTTATTGG +
Preference number: 5 (lower is better)
Translates to: CPAQCVQSSGEGALS*AVLWHFDSPSDCYW
Trigger: CCAATAACAATCGCTGGGTGAGTCGAAGTGCCACAGCACAGCGCAGGAAAGAGCGCCTTCGCCAGAGCTCTGAACACATTGGGCTGGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp AGCTTCTTGGTCAGTGGCTGGTTAGAGAGCAGCTGCTTGAGGTGCTaGGACAAGAGCTTCTTTTCCAGGGACAACCTTATCCACGCCCGC +
Preference number: 5 (lower is better)
Translates to: SFLVSGWLESSCLRC*DKSFFSRDNLIHAR
Trigger: GCGGGCGTGGATAAGGTTGTCCCTGGAAAAGAAGCTCTTGTCGCAGCACCTCAAGCAGCTGCTCTCTAACCAGCCACTGACCAAGAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CCA 90 bp TATTTCTCCCGTAAGTCACTGTCCAGCCCAATGTGTTCAGAGCTCTaGCGAAGGCGCTCTTTCCTGCGCTGTGCTGTGGCACTTCGACTC +
Preference number: 5 (lower is better)
Translates to: YFSRKSLSSPMCSEL*RRRSFLRCAVALRL
Trigger: GAGTCGAAGTGCCACAGCACAGCGCAGGAAAGAGCGCCTTCGCCAGAGCTCTGAACACATTGGGCTGGACAGTGACTTACGGGAGAAATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTGTCACCCCAGTCCTCTaGGCAAGAGCCTGGAGGCGG +
Preference number: 5 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVVTPVL*ARAWRR
Trigger: CCGCCTCCAGGCTCTTGCCAAGAGGACTGGGGTGAC...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp ACAAAGCATTCTGGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGGAAAGAGGGAGTTCATaGGGCCCAGGCCTCTGGCAG +
Preference number: 5 (lower is better)
Translates to: TKHSGSFVRPGGKKKPSWERGSS*GPGLWQ
Trigger: CTGCCAGAGGCCTGGGCCCAATGAACTCCCTCTTTC...CCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 90 bp CTCTCAAGCGGCAAGGGTGGTGGCTGCTGTGAGGTAACTGCCTTGTaGAGTTGGAAGAGGAATTTCTTGCAGGCTTGCATGAAAGGCAGA +
Preference number: 5 (lower is better)
Translates to: LSSGKGGGCCEVTAL*SWKRNFLQACMKGR
Trigger: TCTGCCTTTCATGCAAGCCTGCAAGAAATTCCTCTTCCAACTTCACAAGGCAGTTACCTCACAGCAGCCACCACCCTTGCCGCTTGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp ACAAAGCATTCTGGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGTGCATCTGTTCCCGGTaGGTCAGCCAGGACTCCATG +
Preference number: 5 (lower is better)
Translates to: TKHSGSFVRPGGKKKPSWCICSR*VSQDSM
Trigger: CATGGAGTCCTGGCTGACCAACCGGGAACAGATGCA...CCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 90 bp GCAACTGGCGAGTCTGTGAGGTGCTCTTGTTTCTCTTCTCTATCCTaGAACTGGAGCAAATGTGACCACAAGGCAGACTTCCCCTGCTTG +
Preference number: 5 (lower is better)
Translates to: ATGESVRCSCFSSLS*NWSKCDHKADFPCL
Trigger: CAAGCAGGGGAAGTCTGCCTTGTGGTCACATTTGCTCCAGTTTCAGGATAGAGAAGAGAAACAAGAGCACCTCACAGACTCGCCAGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp CTCCTGGTTGTCGTGGGAGATTTCTGCTGTGGTGGAGTCCGACACTaGTTTCCCAGGTCTTCATCTGAAGCTGATGTCATCAATTCTCCA +
Preference number: 5 (lower is better)
Translates to: LLVVVGDFCCGGVRH*FPRSSSEADVINSP
Trigger: TGGAGAATTGATGACATCAGCTTCAGATGAAGACCTGGGAAAGCAGTGTCGGACTCCACCACAGCAGAAATCTCCCACGACAACCAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp GTTAGTGAGGTAATACTCAGTCTCCTGGTTGTCGTGGGAGATTTCTaGTGTGGTGGAGTCCGACACTGCTTTCCCAGGTCTTCATCTGAA +
Preference number: 5 (lower is better)
Translates to: VSEVILSLLVVVGDF*CGGVRHCFPRSSSE
Trigger: TTCAGATGAAGACCTGGGAAAGCAGTGTCGGACTCCACCACAGCAGAAATCTCCCACGACAACCAGGAGACTGAGTATTACCTCACTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp AAAGATGCGGGCAGATTTGAACCCATGATGGAAAACTTGTTCAAGTaGAGCAACCAGGCCATTTTCTCCGCACAGCAGCACTGTGAGGCT +
Preference number: 5 (lower is better)
Translates to: KDAGRFEPMMENLFK*SNQAIFSAQQHCEA
Trigger: AGCCTCACAGTGCTGCTGTGCGGAGAAAATGGCCTGGTTGCTGCACTTGAACAAGTTTTCCATCATGGGTTCAAATCTGCCCGCATCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CCA 90 bp TGTGTAAAGCGGTTGGCAAAGACCTCTCGCAGCTGTACATTGAGCTaGGAGTCCCTCAAGTCGGCCTCTTCACACTGCAATTTTAAATCC +
Preference number: 5 (lower is better)
Translates to: CVKRLAKTSRSCTLS*ESLKSASSHCNFKS
Trigger: GGATTTAAAATTGCAGTGTGAAGAGGCCGACTTGAGGGACTCCCAGCTCAATGTACAGCTGCGAGAGGTCTTTGCCAACCGCTTTACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 90 bp CAGTCATGTGGTCTCGAAGCAGTGCATTCTCTTCATACATTCGGGTaGTGGCAGGACATTCTGCTAGCAATGGAATCCACTGTGGAAGCA +
Preference number: 5 (lower is better)
Translates to: QSCGLEAVHSLHTFG*WQDILLAMESTVEA
Trigger: TGCTTCCACAGTGGATTCCATTGCTAGCAGAATGTCCTGCCATCACCCGAATGTATGAAGAGAATGCACTGCTTCGAGACCACATGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp AGTGAGTCCATACTGCAAGAGGATGAAGCGTACACACTGCTGTACTaGTCAGCATTATGCATCTGGTACAGTGTCTGCATGGCTGTACAG +
Preference number: 5 (lower is better)
Translates to: SESILQEDEAYTLLY*SALCIWYSVCMAVQ
Trigger: CTGTACAGCCATGCAGACACTGTACCAGATGCATAATGCTGAGCAGTACAGCAGTGTGTACGCTTCATCCTCTTGCAGTATGGACTCACT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp CACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTCATCCGATCCTCTGGAACTCATCGGACTGTAACTTaGGAAAGAACCCTTGCTCAT +
Preference number: 5 (lower is better)
Translates to: HYAGCPRWLEEFIRSSGTHRTVT*ERTLAH
Trigger: ATGAGCAAGGGTTCTTTCCAAAGTTACAGTCCGATG...AGTTCCAGAGGATCGGATGAACTCTTCTAACCACCTTGGGCACCCAGCATAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp GCCTACACGAATGTATGTTCACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTTATTGGCTGGTCCTGTaGCCAAGACATCGGACTGTA +
Preference number: 5 (lower is better)
Translates to: AYTNVCSLCWVPKVVRRVYWLVL*PRHRTV
Trigger: TACAGTCCGATGTCTTGGCAACAGGACCAGCCAATA...AACTCTTCTAACCACCTTGGGCACCCAGCATAGTGAACATACATTCGTGTAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp AGGTTGCATCTCCCTCGTCAATACTACTTGCCAGTGAGTCCATACTaGAAGAGGATGAAGCGTACACACTGCTGTACTGCTCAGCATTAT +
Preference number: 5 (lower is better)
Translates to: RLHLPRQYYLPVSPY*KRMKRTHCCTAQHY
Trigger: ATAATGCTGAGCAGTACAGCAGTGTGTACGCTTCATCCTCTTGCAGTATGGACTCACTGGCAAGTAGTATTGACGAGGGAGATGCAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp AGGTTCTGGCACTCAAAAGTCATCTCAAGCAAGTTCTTTGGAATCTaGATTACTCCGGTGTCTCCCAGCTCTCCTGAAACACAGATCCAC +
Preference number: 5 (lower is better)
Translates to: RFWHSKVISSKFFGI*ITPVSPSSPETQIH
Trigger: GTGGATCTGTGTTTCAGGAGAGCTGGGAGACACCGGAGTAATGCAGATTCCAAAGAACTTGCTTGAGATGACTTTTGAGTGCCAGAACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTTTAGAGAGCAGCTGCTaGAGGTGCTGCGACAAGAGC +
Preference number: 5 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSLESSC*RCCDKS
Trigger: GCTCTTGTCGCAGCACCTCAAGCAGCTGCTCTCTAA...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATAGAAGCAGGTGATCCCTaGTTCCCAGGCAAACTAGAA +
Preference number: 5 (lower is better)
Translates to: STSNTELTPAPPWMPFIIEAGDP*FPGKLE
Trigger: TTCTAGTTTGCCTGGGAACAAGGGATCACCTGCTTC...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 90 bp AATCTTGTGAGTAGAGAAGGGTCTGCATCTCTAAAAGAACACAGGTaGACACTTGCACTAGGTTCTCTAATCCCAGGAGCTCACAGGCCT +
Preference number: 5 (lower is better)
Translates to: NLVSREGSASLKEHR*TLALGSLIPGAHRP
Trigger: AGGCCTGTGAGCTCCTGGGATTAGAGAACCTAGTGCAAGTGTTCACCTGTGTTCTTTTAGAGATGCAGACCCTTCTCTACTCACAAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp CTGCAAGAGGATGAAGCGTACACACTGCTGTACTGCTCAGCATTATaGATCTGGTACAGTGTCTGCATGGCTGTACAGATTTGCTTACTT +
Preference number: 5 (lower is better)
Translates to: LQEDEAYTLLYCSAL*IWYSVCMAVQICLL
Trigger: AAGTAAGCAAATCTGTACAGCCATGCAGACACTGTACCAGATGCATAATGCTGAGCAGTACAGCAGTGTGTACGCTTCATCCTCTTGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATAGAATTTCTTGCAGGCTaGCATGAAAGGCAGAGGTGT +
Preference number: 5 (lower is better)
Translates to: STSNTELTPAPPWMPFIIEFLAG*HERQRC
Trigger: ACACCTCTGCCTTTCATGCAAGCCTGCAAGAAATTC...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp AGCACATCTAACACTGAACTCACTCCAGCCCCTCCTTGGATGCCTTTTATCATATGGAAGAGGAATTTCTaGCAGGCTTGCATGAAAGGC +
Preference number: 5 (lower is better)
Translates to: STSNTELTPAPPWMPFIIWKRNF*QACMKG
Trigger: GCCTTTCATGCAAGCCTGCAAGAAATTCCTCTTCCA...TATGATAAAAGGCATCCAAGGAGGGGCTGGAGTGAGTTCAGTGTTAGATGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 90 bp AAATTTTCACCTGAAGTTGTATTTGCAGTATCTTGGCTCTTGCCATaGCGATCTGCTTCTAGCCATTGGTACAAAACCGCCAGCTCGTCG +
Preference number: 5 (lower is better)
Translates to: KFSPEVVFAVSWLLP*RSASSHWYKTASSS
Trigger: CGACGAGCTGGCGGTTTTGTACCAATGGCTAGAAGCAGATCGTCATGGCAAGAGCCAAGATACTGCAAATACAACTTCAGGTGAAAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127727.2
CDS CCA 90 bp GAGGATGAAGCGTACACACTGCTGTACTGCTCAGCATTATGCATCTaGTACAGTGTCTGCATGGCTGTACAGATTTGCTTACTTGTAACT +
Preference number: 5 (lower is better)
Translates to: EDEAYTLLYCSALCI*YSVCMAVQICLLVT
Trigger: AGTTACAAGTAAGCAAATCTGTACAGCCATGCAGACACTGTACCAGATGCATAATGCTGAGCAGTACAGCAGTGTGTACGCTTCATCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp CACTATGCTGGGTGCCCAAGGTGGTTAGAAGAGTTCATCCGATCCTCTGGAACTTCAATCTTTGTTCAATaGACTGGGCTGCTTCTTTTA +
Preference number: 5 (lower is better)
Translates to: HYAGCPRWLEEFIRSSGTSIFVQ*TGLLLL
Trigger: TAAAAGAAGCAGCCCAGTCAATTGAACAAAGATTGA...AGTTCCAGAGGATCGGATGAACTCTTCTAACCACCTTGGGCACCCAGCATAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp ACAAAGCATTCTGGTTCCTTTGTGAGACCTGGAGGGAAAAAGAAGCCTTCCTGGCATGGCTGTACAGATTaGCTTACTTGTAACTTCTTC +
Preference number: 5 (lower is better)
Translates to: TKHSGSFVRPGGKKKPSWHGCTD*LTCNFF
Trigger: GAAGAAGTTACAAGTAAGCAAATCTGTACAGCCATG...CCAGGAAGGCTTCTTTTTCCCTCCAGGTCTCACAAAGGAACCAGAATGCTTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp CTAGAAAGGTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAACCCAGCGATTGTTATaGGCTGGTCCTGTTGCCAAG +
Preference number: 5 (lower is better)
Translates to: LERFQEFLNCLLSQIHSSTQRLL*AGPVAK
Trigger: CTTGGCAACAGGACCAGCCAATAACAATCGCTGGGT...TGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAACCTTTCTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp TTGTGTTCTGAAAGACAGCCCTTTGGGCATGCACAGCATGTTCACTaGATCTTGATCAAAAGGGTTCCATTCTATGTTTTGAGGATAGTG +
Preference number: 5 (lower is better)
Translates to: LCSERQPFGHAQHVH*ILIKRVPFYVLRIV
Trigger: CACTATCCTCAAAACATAGAATGGAACCCTTTTGATCAAGATGCAGTGAACATGCTGTGCATGCCCAAAGGGCTGTCTTTCAGAACACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111557.8
ENSMUST00000127727.2
CDS-3UTR CAA 90 bp GTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCAGTCTGCCAGTTCCATTCTATGTTTaGAGGATAGTGGGCCAGAAC +
Preference number: 5 (lower is better)
Translates to: VSGVPKLSLESNSLLSLPVPFYV*RIVGQN
Trigger: GTTCTGGCCCACTATCCTCAAAACATAGAATGGAAC...TGGCAGACTGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 90 bp GCAGGCTTGCATGAAAGGCAGAGGTGTGATCAAGCAGATACTTTTTaGAACATACAAGGTGTCTCTGTTGATGTCATAAGAGTTGTATCG +
Preference number: 5 (lower is better)
Translates to: AGLHERQRCDQADTF*NIQGVSVDVIRVVS
Trigger: CGATACAACTCTTATGACATCAACAGAGACACCTTGTATGTTTCAAAAAGTATCTGCTTGATCACACCTCTGCCTTTCATGCAAGCCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 90 bp CCAAGACATCGGACTGTAACTTTGGAAAGAACCCTTGCTCATATTTaGCTTGACCAATTTTCATATCAAGTAGATGTGGGTGGATTGCAG +
Preference number: 5 (lower is better)
Translates to: PRHRTVTLERTLAHI*LDQFSYQVDVGGLQ
Trigger: CTGCAATCCACCCACATCTACTTGATATGAAAATTGGTCAAGGCAAATATGAGCAAGGGTTCTTTCCAAAGTTACAGTCCGATGTCTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp CTTAAAAGGTACAATGAGGACTGCTGTACACTATGTAAAGCTGTATACATTCACCCTCGTCAATACTACTaGCCAGTGAGTCCATACTGC +
Preference number: 5 (lower is better)
Translates to: LKRYNEDCCTLCKAVYIHPRQYY*PVSPYC
Trigger: GCAGTATGGACTCACTGGCAAGTAGTATTGACGAGG...GTGAATGTATACAGCTTTACATAGTGTACAGCAGTCCTCATTGTACCTTTTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAACTTTGGAAAGAACCCTaGCTCATATTTGCCTTGACC +
Preference number: 5 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKLWKEP*LIFALT
Trigger: GGTCAAGGCAAATATGAGCAAGGGTTCTTTCCAAAG...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp CTAGAAAGGTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCATTCTCCAATTCCTTCTaGGATCTGTCCAGCATTGGG +
Preference number: 5 (lower is better)
Translates to: LERFQEFLNCLLSQIHSSFSNSF*DLSSIG
Trigger: CCCAATGCTGGACAGATCCAAGAAGGAATTGGAGAA...TGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAACCTTTCTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAAACTAGAATCTGGAATTaGCCGTCCTTCCCAATGTTC +
Preference number: 5 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKTRIWN*PSFPMF
Trigger: GAACATTGGGAAGGACGGCAAATTCCAGATTCTAGT...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 90 bp ATCCGAGAATCAAAGACCCGAAGCAGAGGGTCTTTCTCTTCCCATTaGGACATGATCTTATTATCAATAAAGGTGGCAAACATCTGTGTT +
Preference number: 5 (lower is better)
Translates to: IRESKTRSRGSFSSH*DMILLSIKVANICV
Trigger: AACACAGATGTTTGCCACCTTTATTGATAATAAGATCATGTCTCAATGGGAAGAGAAAGACCCTCTGCTTCGGGTCTTTGATTCTCGGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 90 bp CTTTGTTCAATTGACTGGGCTGCTTCTTTTAAACTGCTGCATTTCTaGTATATAGATGTCCGCAGGGTGGGTGCCCTTACATTATACAAT +
Preference number: 5 (lower is better)
Translates to: LCSIDWAASFKLLHF*YIDVRRVGALTLYN
Trigger: ATTGTATAATGTAAGGGCACCCACCCTGCGGACATCTATATATCAGAAATGCAGCAGTTTAAAAGAAGCAGCCCAGTCAATTGAACAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp GGATCCAACACACAAGTAATTGGACCAAGCAAGCATGGCTACTTCCTAAATCACTCAAGCAGATACTTTTaGAAACATACAAGGTGTCTC +
Preference number: 5 (lower is better)
Translates to: GSNTQVIGPSKHGYFLNHSSRYF*KHTRCL
Trigger: GAGACACCTTGTATGTTTCAAAAAGTATCTGCTTGA...GTGATTTAGGAAGTAGCCATGCTTGCTTGGTCCAATTACTTGTGTGTTGGATCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp GGATCCAACACACAAGTAATTGGACCAAGCAAGCATGGCTACTTCCTAAATCACAACTCAATAAAATGGTaGTCAATATCCACGAAGCAC +
Preference number: 5 (lower is better)
Translates to: GSNTQVIGPSKHGYFLNHNSIKW*SISTKH
Trigger: GTGCTTCGTGGATATTGACAACCATTTTATTGAGTT...GTGATTTAGGAAGTAGCCATGCTTGCTTGGTCCAATTACTTGTGTGTTGGATCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCGTAGATGTGGGTGGATaGCAGTGTGATCCATTTTCA +
Preference number: 5 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSVDVGG*QCDPFS
Trigger: TGAAAATGGATCACACTGCAATCCACCCACATCTAC...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp AACAAAGACTGGGCTGGTAGTTTAGCTCCACTTAAAGAGTTTAGATGGCCAAGTCTACCAACATGCGTTTaGTCTTCATTCTGCATTCTT +
Preference number: 5 (lower is better)
Translates to: NKDWAGSLAPLKEFRWPSLPTCV*SSFCIL
Trigger: AAGAATGCAGAATGAAGACAAAACGCATGTTGGTAG...ACTTGGCCATCTAAACTCTTTAAGTGGAGCTAAACTACCAGCCCAGTCTTTGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTATTCGGATAAGGGAGTaGACAGTCATGTGGTCTCGA +
Preference number: 5 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSIRIRE*TVMWSR
Trigger: TCGAGACCACATGACTGTCAACTCCCTTATCCGAAT...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp CTAGAAAGGTTTCAGGAGTTCCTAAATTGTCTCTTGAGTCAAATTCACTCCTCACATGTTCACTGCATCTaGATCAAAAGGGTTCCATTC +
Preference number: 5 (lower is better)
Translates to: LERFQEFLNCLLSQIHSSHVHCI*IKRVPF
Trigger: GAATGGAACCCTTTTGATCAAGATGCAGTGAACATG...TGAGGAGTGAATTTGACTCAAGAGACAATTTAGGAACTCCTGAAACCTTTCTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp CTTAAAAGGTACAATGAGGACTGCTGTACACTATGTAAAGCTGTATACATTCACGGTCAGTTCCTTCTTTaGACTGAAGACCCATCAGAT +
Preference number: 5 (lower is better)
Translates to: LKRYNEDCCTLCKAVYIHGQFLL*TEDPSD
Trigger: ATCTGATGGGTCTTCAGTCAAAAGAAGGAACTGACC...GTGAATGTATACAGCTTTACATAGTGTACAGCAGTCCTCATTGTACCTTTTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp TACCGCAAAAGCAAACTTCTTTACAAAGCTCAACGGTCCATTGGATTGAGCAAAAATATGCCTCATGTCTaGAATAAGAGAGACTCTGAG +
Preference number: 5 (lower is better)
Translates to: YRKSKLLYKAQRSIGLSKNMPHV*NKRDSE
Trigger: CTCAGAGTCTCTCTTATTCAAGACATGAGGCATATT...TTTGCTCAATCCAATGGACCGTTGAGCTTTGTAAAGAAGTTTGCTTTTGCGGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTTCTCAAGCAAGTTCTTaGGAATCTGCATTACTCCGG +
Preference number: 5 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSSQASS*ESALLR
Trigger: CCGGAGTAATGCAGATTCCAAAGAACTTGCTTGAGA...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp CTTAAAAGGTACAATGAGGACTGCTGTACACTATGTAAAGCTGTATACATTCACGCCAGAACTTTGGATTaGAATGTTCTTCTCAGAGGA +
Preference number: 5 (lower is better)
Translates to: LKRYNEDCCTLCKAVYIHARTLD*NVLLRG
Trigger: TCCTCTGAGAAGAACATTCAAATCCAAAGTTCTGGC...GTGAATGTATACAGCTTTACATAGTGTACAGCAGTCCTCATTGTACCTTTTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp GTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGAGTAAGAATGTCTCCATAAACATGCTGCCATaGAAAAGGGAACAAGAGTGT +
Preference number: 5 (lower is better)
Translates to: VQLTEDSTEEMILSKNVSINMLP*KREQEC
Trigger: ACACTCTTGTTCCCTTTTCAATGGCAGCATGTTTAT...GGAGACATTCTTACTCAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp CTTAAAAGGTACAATGAGGACTGCTGTACACTATGTAAAGCTGTATACATTCACAGGAGGAATCCCAAATaGGAGAAGAACTTCAGACAA +
Preference number: 5 (lower is better)
Translates to: LKRYNEDCCTLCKAVYIHRRNPK*EKNFRQ
Trigger: TTGTCTGAAGTTCTTCTCCAATTTGGGATTCCTCCT...GTGAATGTATACAGCTTTACATAGTGTACAGCAGTCCTCATTGTACCTTTTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp CATAGCTTCCTATCTGTACAGTTGACTGAAGATTCAACAGAAGAAATGATCCTGGAGAGAAAAGAAGCTTaGTCAAAGTTCTGCATCTGT +
Preference number: 5 (lower is better)
Translates to: HSFLSVQLTEDSTEEMILERKEA*SKFCIC
Trigger: ACAGATGCAGAACTTTGACAAAGCTTCTTTTCTCTC...CAGGATCATTTCTTCTGTTGAATCTTCAGTCAACTGTACAGATAGGAAGCTATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp CTTAAAAGGTACAATGAGGACTGCTGTACACTATGTAAAGCTGTATACATTCACAGCACATCACCTTCATaGTCTAAAATCTGGTCAGTG +
Preference number: 5 (lower is better)
Translates to: LKRYNEDCCTLCKAVYIHSTSPS*SKIWSV
Trigger: CACTGACCAGATTTTAGACAATGAAGGTGATGTGCT...GTGAATGTATACAGCTTTACATAGTGTACAGCAGTCCTCATTGTACCTTTTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp GCCTTGTCTACTACTTCCTATTTTAGAGATATTGACACATGTCAGACACAAAGTTACACATCCACTCCTTaGATTAGTGATCCTTCCAAG +
Preference number: 5 (lower is better)
Translates to: ALSTTSYFRDIDTCQTQSYTSTP*ISDPSK
Trigger: CTTGGAAGGATCACTAATCAAAGGAGTGGATGTGTA...ACTTTGTGTCTGACATGTGTCAATATCTCTAAAATAGGAAGTAGTAGACAAGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGAACTGCCTTGTGAAGTaGGAAGAGGAATTTCTTGCA +
Preference number: 5 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLNCLVK*EEEFLA
Trigger: TGCAAGAAATTCCTCTTCCAACTTCACAAGGCAGTT...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS-3UTR CAA 90 bp TTTAGAGATATTGACACATGTCAGACACAAAGTCCTATGTATAGCCTTAATCTGACCATATTCTTCAGTTaGGTGGCACTCTCACTAGAA +
Preference number: 5 (lower is better)
Translates to: FRDIDTCQTQSPMYSLNLTIFFS*VALSLE
Trigger: TTCTAGTGAGAGTGCCACCAAACTGAAGAATATGGT...CAGATTAAGGCTATACATAGGACTTTGTGTCTGACATGTGTCAATATCTCTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp CAATGTGTTCAGAGCTCTGGCGAAGGCGCTCTTTCCTaGGCTGTGCTGTGGCACTTCGACTCACCCAGCGAT +
Preference number: 6 (lower is better)
Translates to: QCVQSSGEGALS*AVLWHFDSPSD
Trigger: ATCGCTGGGTGAGTCGAAGTGCCACAGCACAGCGCAGGAAAGAGCGCCTTCGCCAGAGCTCTGAACACATTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CCA 72 bp CACAAGGCAGACTTCCCCTGCTTGACCAGTAAGCCGTaGCTCCATATCCTCTCCAGTAGGTCACACAGGCTG +
Preference number: 6 (lower is better)
Translates to: HKADFPCLTSKP*LHILSSRSHRL
Trigger: CAGCCTGTGTGACCTACTGGAGAGGATATGGAGCCACGGCTTACTGGTCAAGCAGGGGAAGTCTGCCTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp TTCAGAGCTCTGGCGAAGGCGCTCTTTCCTGCGCTGTaGTGTGGCACTTCGACTCACCCAGCGATTGTTATT +
Preference number: 6 (lower is better)
Translates to: FRALAKALFPAL*CGTSTHPAIVI
Trigger: AATAACAATCGCTGGGTGAGTCGAAGTGCCACAGCACAGCGCAGGAAAGAGCGCCTTCGCCAGAGCTCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CCA 72 bp CGGTTGGCAAAGACCTCTCGCAGCTGTACATTGAGCTaGGAGTCCCTCAAGTCGGCCTCTTCACACTGCAAT +
Preference number: 6 (lower is better)
Translates to: RLAKTSRSCTLS*ESLKSASSHCN
Trigger: ATTGCAGTGTGAAGAGGCCGACTTGAGGGACTCCCAGCTCAATGTACAGCTGCGAGAGGTCTTTGCCAACCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 72 bp GTAAAGCGGTTGGCAAAGACCTCTCGCAGCTGTACATaGAGCTGGGAGTCCCTCAAGTCGGCCTCTTCACAC +
Preference number: 6 (lower is better)
Translates to: VKRLAKTSRSCT*SWESLKSASSH
Trigger: GTGTGAAGAGGCCGACTTGAGGGACTCCCAGCTCAATGTACAGCTGCGAGAGGTCTTTGCCAACCGCTTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CCA 72 bp ACTCAGTCTCCTGGTTGTCGTGGGAGATTTCTGCTGTaGTGGAGTCCGACACTGCTTTCCCAGGTCTTCATC +
Preference number: 6 (lower is better)
Translates to: TQSPGCRGRFLL*WSPTLLSQVFI
Trigger: GATGAAGACCTGGGAAAGCAGTGTCGGACTCCACCACAGCAGAAATCTCCCACGACAACCAGGAGACTGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 72 bp AGCTTCTTGGTCAGTGGCTGGTTAGAGAGCAGCTGCTaGAGGTGCTGCGACAAGAGCTTCTTTTCCAGGGAC +
Preference number: 6 (lower is better)
Translates to: SFLVSGWLESSC*RCCDKSFFSRD
Trigger: GTCCCTGGAAAAGAAGCTCTTGTCGCAGCACCTCAAGCAGCTGCTCTCTAACCAGCCACTGACCAAGAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp GGCAAGGGTGGTGGCTGCTGTGAGGTAACTGCCTTGTaGAGTTGGAAGAGGAATTTCTTGCAGGCTTGCATG +
Preference number: 6 (lower is better)
Translates to: GKGGGCCEVTAL*SWKRNFLQACM
Trigger: CATGCAAGCCTGCAAGAAATTCCTCTTCCAACTTCACAAGGCAGTTACCTCACAGCAGCCACCACCCTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp GTCGTGGGAGATTTCTGCTGTGGTGGAGTCCGACACTaGTTTCCCAGGTCTTCATCTGAAGCTGATGTCATC +
Preference number: 6 (lower is better)
Translates to: VVGDFCCGGVRH*FPRSSSEADVI
Trigger: GATGACATCAGCTTCAGATGAAGACCTGGGAAAGCAGTGTCGGACTCCACCACAGCAGAAATCTCCCACGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp GTAATACTCAGTCTCCTGGTTGTCGTGGGAGATTTCTaGTGTGGTGGAGTCCGACACTGCTTTCCCAGGTCT +
Preference number: 6 (lower is better)
Translates to: VILSLLVVVGDF*CGGVRHCFPRS
Trigger: AGACCTGGGAAAGCAGTGTCGGACTCCACCACAGCAGAAATCTCCCACGACAACCAGGAGACTGAGTATTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp ACCTTATCCACGCCCGCGCCCGTCCAACGTCAGTCTTaGTCTCAGTCATGTTCTGAATATGCCTCATGTCTT +
Preference number: 6 (lower is better)
Translates to: TLSTPAPVQRQS*SQSCSEYASCL
Trigger: AAGACATGAGGCATATTCAGAACATGACTGAGATCAAGACTGACGTTGGACGGGCGCGGGCGTGGATAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp GGCTGGTCAGAGAGAAAAGAAGCTTTGTCAAAGTTCTaGATCTGTTCCCGGTTGGTCAGCCAGGACTCCATG +
Preference number: 6 (lower is better)
Translates to: GWSERKEALSKF*ICSRLVSQDSM
Trigger: CATGGAGTCCTGGCTGACCAACCGGGAACAGATGCAGAACTTTGACAAAGCTTCTTTTCTCTCTGACCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CCA 72 bp AAGAAGCTTTGTCAAAGTTCTGCATCTGTTCCCGGTTaGTCAGCCAGGACTCCATGTCCTGGGCAGTCTGAA +
Preference number: 6 (lower is better)
Translates to: KKLCQSSASVPG*SARTPCPGQSE
Trigger: TTCAGACTGCCCAGGACATGGAGTCCTGGCTGACCAACCGGGAACAGATGCAGAACTTTGACAAAGCTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 90 bp AACATCTGTGTAAAGCGGTTGGCAAAGACCTCTCGCAGCTGTACATaGAGCTGGGAGTCCCTCAAGTCGGCCTCTTCACACTGCAATTTT +
Preference number: 6 (lower is better)
Translates to: NICVKRLAKTSRSCT*SWESLKSASSHCNF
Trigger: AAAATTGCAGTGTGAAGAGGCCGACTTGAGGGACTCCCAGCTCAATGTACAGCTGCGAGAGGTCTTTGCCAACCGCTTTACACAGATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 90 bp CTGTGGCACTTCGACTCACCCAGCGATTGTTATTGGCTGGTCCTGTaGCCAAGACATCGGACTGTAACTTTGGAAAGAACCCTTGCTCAT +
Preference number: 6 (lower is better)
Translates to: LWHFDSPSDCYWLVL*PRHRTVTLERTLAH
Trigger: ATGAGCAAGGGTTCTTTCCAAAGTTACAGTCCGATGTCTTGGCAACAGGACCAGCCAATAACAATCGCTGGGTGAGTCGAAGTGCCACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp CTCCCTCGTCAATACTACTTGCCAGTGAGTCCATACTaGAAGAGGATGAAGCGTACACACTGCTGTACTGCT +
Preference number: 6 (lower is better)
Translates to: LPRQYYLPVSPY*KRMKRTHCCTA
Trigger: AGCAGTACAGCAGTGTGTACGCTTCATCCTCTTGCAGTATGGACTCACTGGCAAGTAGTATTGACGAGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp GGCAGATTTGAACCCATGATGGAAAACTTGTTCAAGTaGAGCAACCAGGCCATTTTCTCCGCACAGCAGCAC +
Preference number: 6 (lower is better)
Translates to: GRFEPMMENLFK*SNQAIFSAQQH
Trigger: GTGCTGCTGTGCGGAGAAAATGGCCTGGTTGCTGCACTTGAACAAGTTTTCCATCATGGGTTCAAATCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CCA 72 bp GAGAAAAGCATAGCGCTTATAAAGCTTCTTGGTCAGTaGCTGGTTAGAGAGCAGCTGCTTGAGGTGCTGCGA +
Preference number: 6 (lower is better)
Translates to: EKSIALIKLLGQ*LVREQLLEVLR
Trigger: TCGCAGCACCTCAAGCAGCTGCTCTCTAACCAGCCACTGACCAAGAAGCTTTATAAGCGCTATGCTTTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 90 bp GCTGGAGTTTCAAAAGAGAGGTTGCATCTCCCTCGTCAATACTACTaGCCAGTGAGTCCATACTGCAAGAGGATGAAGCGTACACACTGC +
Preference number: 6 (lower is better)
Translates to: AGVSKERLHLPRQYY*PVSPYCKRMKRTHC
Trigger: GCAGTGTGTACGCTTCATCCTCTTGCAGTATGGACTCACTGGCAAGTAGTATTGACGAGGGAGATGCAACCTCTCTTTTGAAACTCCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp GGCGATCAAGGTGTTTTCTTCCAAGCCAGTAATGTTTaGTTCTCCATGGCCCAGTTCTACTGCTTCATGTCC +
Preference number: 6 (lower is better)
Translates to: GDQGVFFQASNV*FSMAQFYCFMS
Trigger: GGACATGAAGCAGTAGAACTGGGCCATGGAGAAGCAAACATTACTGGCTTGGAAGAAAACACCTTGATCGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp GATAAGGGAGTTGACAGTCATGTGGTCTCGAAGCAGTaGATTCTCTTCATACATTCGGGTGATGGCAGGACA +
Preference number: 6 (lower is better)
Translates to: DKGVDSHVVSKQ*ILFIHSGDGRT
Trigger: TGTCCTGCCATCACCCGAATGTATGAAGAGAATGCACTGCTTCGAGACCACATGACTGTCAACTCCCTTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 72 bp TTCGACTCACCCAGCGATTGTTATTGGCTGGTCCTGTaGCCAAGACATCGGACTGTAACTTTGGAAAGAACC +
Preference number: 6 (lower is better)
Translates to: FDSPSDCYWLVL*PRHRTVTLERT
Trigger: GGTTCTTTCCAAAGTTACAGTCCGATGTCTTGGCAACAGGACCAGCCAATAACAATCGCTGGGTGAGTCGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 90 bp TTCACAGCTTCTCCAATTCCTTCTTGGATCTGTCCAGCATTGGGTTaGGCAGGCTTTCCCGTTAGTGAGGTAATACTCAGTCTCCTGGTT +
Preference number: 6 (lower is better)
Translates to: FTASPIPSWICPALG*AGFPVSEVILSLLV
Trigger: AACCAGGAGACTGAGTATTACCTCACTAACGGGAAAGCCTGCCAAACCCAATGCTGGACAGATCCAAGAAGGAATTGGAGAAGCTGTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 90 bp TCTGAAAGACAGCCCTTTGGGCATGCACAGCATGTTCACTGCATCTaGATCAAAAGGGTTCCATTCTATGTTTTGAGGATAGTGGGCCAG +
Preference number: 6 (lower is better)
Translates to: SERQPFGHAQHVHCI*IKRVPFYVLRIVGQ
Trigger: CTGGCCCACTATCCTCAAAACATAGAATGGAACCCTTTTGATCAAGATGCAGTGAACATGCTGTGCATGCCCAAAGGGCTGTCTTTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111557.8
ENSMUST00000127727.2
CDS TCA 72 bp CTATGGTCTCACTGCCCTTCAGTAGCTCATACACGCTaGCGCTGTTGTTGGGGACATTTCCATTCTTTTTGT +
Preference number: 6 (lower is better)
Translates to: LWSHCPSVAHTR*RCCWGHFHSFC
Trigger: ACAAAAAGAATGGAAATGTCCCCAACAACAGCGTCAGCGTGTATGAGCTACTGAAGGGCAGTGAGACCATAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp ATGTCCGCAGGGTGGGTGCCCTTACATTATACAATCTaGTCTTCTCAATCCGAGAATCAAAGACCCGAAGCA +
Preference number: 6 (lower is better)
Translates to: MSAGWVPLHYTI*SSQSENQRPEA
Trigger: TGCTTCGGGTCTTTGATTCTCGGATTGAGAAGATCAGATTGTATAATGTAAGGGCACCCACCCTGCGGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp GAGTCTGTGAGGTGCTCTTGTTTCTCTTCTCTATCCTaGAACTGGAGCAAATGTGACCACAAGGCAGACTTC +
Preference number: 6 (lower is better)
Translates to: ESVRCSCFSSLS*NWSKCDHKADF
Trigger: GAAGTCTGCCTTGTGGTCACATTTGCTCCAGTTTCAGGATAGAGAAGAGAAACAAGAGCACCTCACAGACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp CCTGAAGTTGTATTTGCAGTATCTTGGCTCTTGCCATaGCGATCTGCTTCTAGCCATTGGTACAAAACCGCC +
Preference number: 6 (lower is better)
Translates to: PEVVFAVSWLLP*RSASSHWYKTA
Trigger: GGCGGTTTTGTACCAATGGCTAGAAGCAGATCGTCATGGCAAGAGCCAAGATACTGCAAATACAACTTCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127727.2
CDS GCA 72 bp GATGAAGCGTACACACTGCTGTACTGCTCAGCATTATaGATCTGGTACAGTGTCTGCATGGCTGTACAGATT +
Preference number: 6 (lower is better)
Translates to: DEAYTLLYCSAL*IWYSVCMAVQI
Trigger: AATCTGTACAGCCATGCAGACACTGTACCAGATGCATAATGCTGAGCAGTACAGCAGTGTGTACGCTTCATC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp ATACTGCAAGAGGATGAAGCGTACACACTGCTGTACTaGTCAGCATTATGCATCTGGTACAGTGTCTGCATG +
Preference number: 6 (lower is better)
Translates to: ILQEDEAYTLLY*SALCIWYSVCM
Trigger: CATGCAGACACTGTACCAGATGCATAATGCTGAGCAGTACAGCAGTGTGTACGCTTCATCCTCTTGCAGTAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp AATCTGGAATTTGCCGTCCTTCCCAATGTTCCTGGGTaGAGTGTTAATAGCATTCACGTAGTGGCAGAAGGT +
Preference number: 6 (lower is better)
Translates to: NLEFAVLPNVPG*SVNSIHVVAEG
Trigger: ACCTTCTGCCACTACGTGAATGCTATTAACACTGCACCCAGGAACATTGGGAAGGACGGCAAATTCCAGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CCA 72 bp GCGTACACACTGCTGTACTGCTCAGCATTATGCATCTaGTACAGTGTCTGCATGGCTGTACAGATTTGCTTA +
Preference number: 6 (lower is better)
Translates to: AYTLLYCSALCI*YSVCMAVQICL
Trigger: TAAGCAAATCTGTACAGCCATGCAGACACTGTACCAGATGCATAATGCTGAGCAGTACAGCAGTGTGTACGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 72 bp TCAAAAGAGAGGTTGCATCTCCCTCGTCAATACTACTaGCCAGTGAGTCCATACTGCAAGAGGATGAAGCGT +
Preference number: 6 (lower is better)
Translates to: SKERLHLPRQYY*PVSPYCKRMKR
Trigger: ACGCTTCATCCTCTTGCAGTATGGACTCACTGGCAAGTAGTATTGACGAGGGAGATGCAACCTCTCTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 72 bp TCTCCAATTCCTTCTTGGATCTGTCCAGCATTGGGTTaGGCAGGCTTTCCCGTTAGTGAGGTAATACTCAGT +
Preference number: 6 (lower is better)
Translates to: SPIPSWICPALG*AGFPVSEVILS
Trigger: ACTGAGTATTACCTCACTAACGGGAAAGCCTGCCAAACCCAATGCTGGACAGATCCAAGAAGGAATTGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 72 bp ACAGCTTCTCCAATTCCTTCTTGGATCTGTCCAGCATaGGGTTTGGCAGGCTTTCCCGTTAGTGAGGTAATA +
Preference number: 6 (lower is better)
Translates to: TASPIPSWICPA*GLAGFPVSEVI
Trigger: TATTACCTCACTAACGGGAAAGCCTGCCAAACCCAATGCTGGACAGATCCAAGAAGGAATTGGAGAAGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 90 bp ATATTGTTCACAGCTTCTCCAATTCCTTCTTGGATCTGTCCAGCATaGGGTTTGGCAGGCTTTCCCGTTAGTGAGGTAATACTCAGTCTC +
Preference number: 6 (lower is better)
Translates to: ILFTASPIPSWICPA*GLAGFPVSEVILSL
Trigger: GAGACTGAGTATTACCTCACTAACGGGAAAGCCTGCCAAACCCAATGCTGGACAGATCCAAGAAGGAATTGGAGAAGCTGTGAACAATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp AGTAGAGAAGGGTCTGCATCTCTAAAAGAACACAGGTaGACACTTGCACTAGGTTCTCTAATCCCAGGAGCT +
Preference number: 6 (lower is better)
Translates to: SREGSASLKEHR*TLALGSLIPGA
Trigger: AGCTCCTGGGATTAGAGAACCTAGTGCAAGTGTTCACCTGTGTTCTTTTAGAGATGCAGACCCTTCTCTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp CACTCAAAAGTCATCTCAAGCAAGTTCTTTGGAATCTaGATTACTCCGGTGTCTCCCAGCTCTCCTGAAACA +
Preference number: 6 (lower is better)
Translates to: HSKVISSKFFGI*ITPVSPSSPET
Trigger: TGTTTCAGGAGAGCTGGGAGACACCGGAGTAATGCAGATTCCAAAGAACTTGCTTGAGATGACTTTTGAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 72 bp TGCCTTGTGAAGTTGGAAGAGGAATTTCTTGCAGGCTaGCATGAAAGGCAGAGGTGTGATCAAGCAGATACT +
Preference number: 6 (lower is better)
Translates to: CLVKLEEEFLAG*HERQRCDQADT
Trigger: AGTATCTGCTTGATCACACCTCTGCCTTTCATGCAAGCCTGCAAGAAATTCCTCTTCCAACTTCACAAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 72 bp CTTCACAATATTGTTCACAGCTTCTCCAATTCCTTCTaGGATCTGTCCAGCATTGGGTTTGGCAGGCTTTCC +
Preference number: 6 (lower is better)
Translates to: LHNIVHSFSNSF*DLSSIGFGRLS
Trigger: GGAAAGCCTGCCAAACCCAATGCTGGACAGATCCAAGAAGGAATTGGAGAAGCTGTGAACAATATTGTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 90 bp ATGGTCTCACTGCCCTTCAGTAGCTCATACACGCTGACGCTGTTGTaGGGGACATTTCCATTCTTTTTGTCATTAGCCAAATCTTTCAGA +
Preference number: 6 (lower is better)
Translates to: MVSLPFSSSYTLTLL*GTFPFFLSLAKSFR
Trigger: TCTGAAAGATTTGGCTAATGACAAAAAGAATGGAAATGTCCCCAACAACAGCGTCAGCGTGTATGAGCTACTGAAGGGCAGTGAGACCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp AATAAAGGTGGCAAACATCTGTGTTTCAATGAAGCGTaGAAGAAATGGCAGGTAAGGCTCAGGCTGGTCAGA +
Preference number: 6 (lower is better)
Translates to: NKGGKHLCFNEA*KKWQVRLRLVR
Trigger: TCTGACCAGCCTGAGCCTTACCTGCCATTTCTTTCACGCTTCATTGAAACACAGATGTTTGCCACCTTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp GAAAGACAGCCCTTTGGGCATGCACAGCATGTTCACTaGATCTTGATCAAAAGGGTTCCATTCTATGTTTTG +
Preference number: 6 (lower is better)
Translates to: ERQPFGHAQHVH*ILIKRVPFYVL
Trigger: CAAAACATAGAATGGAACCCTTTTGATCAAGATGCAGTGAACATGCTGTGCATGCCCAAAGGGCTGTCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111557.8
ENSMUST00000127727.2
CDS GCA 72 bp GCTGCATTTCTGATATATAGATGTCCGCAGGGTGGGTaGCCTTACATTATACAATCTGATCTTCTCAATCCG +
Preference number: 6 (lower is better)
Translates to: AAFLIYRCPQGG*PYIIQSDLLNP
Trigger: CGGATTGAGAAGATCAGATTGTATAATGTAAGGGCACCCACCCTGCGGACATCTATATATCAGAAATGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 72 bp CAGCCCTTTGGGCATGCACAGCATGTTCACTGCATCTaGATCAAAAGGGTTCCATTCTATGTTTTGAGGATA +
Preference number: 6 (lower is better)
Translates to: QPFGHAQHVHCI*IKRVPFYVLRI
Trigger: TATCCTCAAAACATAGAATGGAACCCTTTTGATCAAGATGCAGTGAACATGCTGTGCATGCCCAAAGGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111557.8
ENSMUST00000127727.2
CDS TCA 72 bp CGTAGTGGCAGAAGGTTTTGCTTGATGGTTTCTGAATaGGCACATCACCTTCATTGTCTAAAATCTGGTCAG +
Preference number: 6 (lower is better)
Translates to: RSGRRFCLMVSE*AHHLHCLKSGQ
Trigger: CTGACCAGATTTTAGACAATGAAGGTGATGTGCTCATTCAGAAACCATCAAGCAAAACCTTCTGCCACTACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp CTGTACTGCTCAGCATTATGCATCTGGTACAGTGTCTaGATGGCTGTACAGATTTGCTTACTTGTAACTTCT +
Preference number: 6 (lower is better)
Translates to: LYCSALCIWYSV*MAVQICLLVTS
Trigger: AGAAGTTACAAGTAAGCAAATCTGTACAGCCATGCAGACACTGTACCAGATGCATAATGCTGAGCAGTACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp TCAAAGACCCGAAGCAGAGGGTCTTTCTCTTCCCATTaGGACATGATCTTATTATCAATAAAGGTGGCAAAC +
Preference number: 6 (lower is better)
Translates to: SKTRSRGSFSSH*DMILLSIKVAN
Trigger: GTTTGCCACCTTTATTGATAATAAGATCATGTCTCAATGGGAAGAGAAAGACCCTCTGCTTCGGGTCTTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp TTTCACCTGAAGTTGTATTTGCAGTATCTTGGCTCTTaGCATGACGATCTGCTTCTAGCCATTGGTACAAAA +
Preference number: 6 (lower is better)
Translates to: FHLKLYLQYLGS*HDDLLLAIGTK
Trigger: TTTTGTACCAATGGCTAGAAGCAGATCGTCATGGCAAGAGCCAAGATACTGCAAATACAACTTCAGGTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127727.2
CDS CAA 90 bp GATTGTTATTGGCTGGTCCTGTTGCCAAGACATCGGACTGTAACTTaGGAAAGAACCCTTGCTCATATTTGCCTTGACCAATTTTCATAT +
Preference number: 6 (lower is better)
Translates to: DCYWLVLLPRHRTVT*ERTLAHICLDQFSY
Trigger: ATATGAAAATTGGTCAAGGCAAATATGAGCAAGGGTTCTTTCCAAAGTTACAGTCCGATGTCTTGGCAACAGGACCAGCCAATAACAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS GCA 72 bp CGGACTGTAACTTTGGAAAGAACCCTTGCTCATATTTaGCTTGACCAATTTTCATATCAAGTAGATGTGGGT +
Preference number: 6 (lower is better)
Translates to: RTVTLERTLAHI*LDQFSYQVDVG
Trigger: ACCCACATCTACTTGATATGAAAATTGGTCAAGGCAAATATGAGCAAGGGTTCTTTCCAAAGTTACAGTCCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 72 bp ATGCATCTGGTACAGTGTCTGCATGGCTGTACAGATTaGCTTACTTGTAACTTCTTCATAGAAAGTGAGAAC +
Preference number: 6 (lower is better)
Translates to: MHLVQCLHGCTD*LTCNFFIESEN
Trigger: GTTCTCACTTTCTATGAAGAAGTTACAAGTAAGCAAATCTGTACAGCCATGCAGACACTGTACCAGATGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 90 bp CTCAGCATTATGCATCTGGTACAGTGTCTGCATGGCTGTACAGATTaGCTTACTTGTAACTTCTTCATAGAAAGTGAGAACAAAACCATA +
Preference number: 6 (lower is better)
Translates to: LSIMHLVQCLHGCTD*LTCNFFIESENKTI
Trigger: TATGGTTTTGTTCTCACTTTCTATGAAGAAGTTACAAGTAAGCAAATCTGTACAGCCATGCAGACACTGTACCAGATGCATAATGCTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp CATGAAAGGCAGAGGTGTGATCAAGCAGATACTTTTTaGAACATACAAGGTGTCTCTGTTGATGTCATAAGA +
Preference number: 6 (lower is better)
Translates to: HERQRCDQADTF*NIQGVSVDVIR
Trigger: TCTTATGACATCAACAGAGACACCTTGTATGTTTCAAAAAGTATCTGCTTGATCACACCTCTGCCTTTCATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp AGCAGATACTTTTTGAAACATACAAGGTGTCTCTGTTaGTGTCATAAGAGTTGTATCGCTGGAGTTTCAAAA +
Preference number: 6 (lower is better)
Translates to: SRYFLKHTRCLC*CHKSCIAGVSK
Trigger: TTTTGAAACTCCAGCGATACAACTCTTATGACATCAACAGAGACACCTTGTATGTTTCAAAAAGTATCTGCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp ATTTTCATATCAAGTAGATGTGGGTGGATTGCAGTGTaGTCCATTTTCATCAATCTTTGTTCAATTGACTGG +
Preference number: 6 (lower is better)
Translates to: IFISSRCGWIAV*SIFINLCSIDW
Trigger: CCAGTCAATTGAACAAAGATTGATGAAAATGGATCACACTGCAATCCACCCACATCTACTTGATATGAAAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS TCA 72 bp GATTGCATTGCTCAGCTTTTTAATTGGAATGATCACTaGTCTATAAGGAATCATGATAGTGGTGAACACACT +
Preference number: 6 (lower is better)
Translates to: DCIAQLFNWNDH*SIRNHDSGEHT
Trigger: AGTGTGTTCACCACTATCATGATTCCTTATAGATCAGTGATCATTCCAATTAAAAAGCTGAGCAATGCAATC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8
CDS CAA 72 bp CTTGACCAATTTTCATATCAAGTAGATGTGGGTGGATaGCAGTGTGATCCATTTTCATCAATCTTTGTTCAA +
Preference number: 6 (lower is better)
Translates to: LDQFSYQVDVGG*QCDPFSSIFVQ
Trigger: TTGAACAAAGATTGATGAAAATGGATCACACTGCAATCCACCCACATCTACTTGATATGAAAATTGGTCAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111557.8