RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DENND5A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035901

Ensembl transcript IDs: ENSMUST00000080437.13, ENSMUST00000106722.2

Found 354 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCACCGCCGTGACGGGGCGGCATGTGGAACAGCCCCACACTTGTTaGAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCAT +
Preference number: 1 (lower is better)
Translates to: LTAVTGRHVEQPHTC*RLSLGGHRLPACGH
Trigger: ATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCACATGCCGCCCCGTCACGGCGGTGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR GCA 90 bp CACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTaGGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCA +
Preference number: 1 (lower is better)
Translates to: HTCCRLSLGGHRLPA*GHAREAPASKQAAP
Trigger: TGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR CCA 90 bp AGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTaGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCT +
Preference number: 1 (lower is better)
Translates to: SIHILSVPHNLLRSL*DEEAELQGVFLGPA
Trigger: AGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR TCA 90 bp GATTGGAGCATGGGATGTCCCACTCGCACACCTGTGCGTGGCCCGTaGAAGCCAGATAGCCAGAATAATGTTAATATAGAAAACATTAGT +
Preference number: 1 (lower is better)
Translates to: DWSMGCPTRTPVRGP*KPDSQNNVNIENIS
Trigger: ACTAATGTTTTCTATATTAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGGGACATCCCATGCTCCAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR TCA 90 bp CATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACATaGTTTTCTGCATGTAGCACAATGACATTGTCCTGGCATGTCTCC +
Preference number: 1 (lower is better)
Translates to: HAHVYSCATLCQQET*FSACSTMTLSWHVS
Trigger: GGAGACATGCCAGGACAATGTCATTGTGCTACATGCAGAAAATCATGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR TCA 90 bp CAACTTTGTGCCAACAGGAAACATGATTTTCTGCATGTAGCACAATaGCATTGTCCTGGCATGTCTCCTTCCCAAATAATACTGACAAAA +
Preference number: 1 (lower is better)
Translates to: QLCANRKHDFLHVAQ*HCPGMSPSQIILTK
Trigger: TTTTGTCAGTATTATTTGGGAAGGAGACATGCCAGGACAATGTCATTGTGCTACATGCAGAAAATCATGTTTCCTGTTGGCACAAAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR CAA 90 bp CCTCACCGCCGTGACGGGGCGGCATGTGGAACAGCCCCACACTTGTaGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCA +
Preference number: 2 (lower is better)
Translates to: PHRRDGAACGTAPHL*QAQSGRPQAPSVRP
Trigger: TGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCACATGCCGCCCCGTCACGGCGGTGAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR-3UTR CCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGTGCAGGGAGTCTTTCTaGGTCCTGCTGCTGGCTGGT +
Preference number: 2 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGCRESF*VLLLAG
Trigger: ACCAGCCAGCAGCAGGACCCAGAAAGACTCCCTGCA...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR-3UTR GCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTATGAAGAGGCAGAGCTaGAGGGAGTCTTTCTGGGTC +
Preference number: 2 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLMKRQS*RESFWV
Trigger: GACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCAT...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR-3UTR GCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGCAGCCCCACACTTGTTaGAGGCTCAGTCTGGGAGGC +
Preference number: 2 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWQPHTC*RLSLGG
Trigger: GCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTG...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR-3UTR CCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGTGCAGGGAGTCTTTCTaGGTCCTGCTGCTGGCTGGT +
Preference number: 2 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWCRESF*VLLLAG
Trigger: ACCAGCCAGCAGCAGGACCCAGAAAGACTCCCTGCA...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR-3UTR GCA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACACCACTCGCACACCTGTaGGTGGCCCGTGAAAGCCAG +
Preference number: 2 (lower is better)
Translates to: PVKHAHVYSCATLCQQETPLAHL*VARESQ
Trigger: CTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR-3UTR CCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGTTGCTTAGGTCCCTTTaGGATGAAGAGGCAGAGCTG +
Preference number: 2 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWLLRSL*DEEAEL
Trigger: CAGCTCTGCCTCTTCATCCCAAAGGGACCTAAGCAA...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR-3UTR GCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTAAGCAGCGCCAACCTTaGCCCTCTCTGTCTCTTTCA +
Preference number: 2 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCKQRQP*PSLSLS
Trigger: TGAAAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTT...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR-3UTR CCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTTTGCTTAGGTCCCTTTaGGATGAAGAGGCAGAGCTG +
Preference number: 2 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCLLRSL*DEEAEL
Trigger: CAGCTCTGCCTCTTCATCCCAAAGGGACCTAAGCAA...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR-3UTR CCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTACAATGACATTGTCCTaGCATGTCTCCTTCCCAAAT +
Preference number: 2 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCTMTLS*HVSFPN
Trigger: ATTTGGGAAGGAGACATGCCAGGACAATGTCATTGT...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR CCA 72 bp ATGTGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTaGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAA +
Preference number: 3 (lower is better)
Translates to: MWNSPTLVAGSV*EATGSQRAAMQ
Trigger: TTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR-3UTR CAA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAGGAACAGCCCCACACTaGTTGCAGGCTCAGTCTGGG +
Preference number: 3 (lower is better)
Translates to: PLAHLCVARESQIARIMLGTAPH*LQAQSG
Trigger: CCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR CCA 72 bp TCAGAGGCACTGCTAAAAATCCCTTTGATTGGAGCATaGGATGTCCCACTCGCACACCTGTGCGTGGCCCGT +
Preference number: 3 (lower is better)
Translates to: SEALLKIPLIGA*DVPLAHLCVAR
Trigger: ACGGGCCACGCACAGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCCTCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR GCA 72 bp TTGATTGGAGCATGGGATGTCCCACTCGCACACCTGTaGGTGGCCCGTGAAAGCCAGATAGCCAGAATAATG +
Preference number: 3 (lower is better)
Translates to: LIGAWDVPLAHL*VARESQIARIM
Trigger: CATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGGGACATCCCATGCTCCAATCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR CCA 72 bp TGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTaGAGCATGGGATGTCCCACTCGCACACCTGTGCGT +
Preference number: 3 (lower is better)
Translates to: CLIRGTAKNPFD*SMGCPTRTPVR
Trigger: ACGCACAGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR-3UTR CAA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTCAAGCAGCGCCAACCTaGCCCCTCTCTGTCTCTTTC +
Preference number: 3 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCQAAPT*PLSVSF
Trigger: GAAAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTG...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR TCA 72 bp GTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACATaGTTTTCTGCATGTAGCACAATGACATTGTCCTGG +
Preference number: 3 (lower is better)
Translates to: VYSCATLCQQET*FSACSTMTLSW
Trigger: CCAGGACAATGTCATTGTGCTACATGCAGAAAATCATGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR TCA 72 bp GCCAACAGGAAACATGATTTTCTGCATGTAGCACAATaGCATTGTCCTGGCATGTCTCCTTCCCAAATAATA +
Preference number: 3 (lower is better)
Translates to: ANRKHDFLHVAQ*HCPGMSPSQII
Trigger: TATTATTTGGGAAGGAGACATGCCAGGACAATGTCATTGTGCTACATGCAGAAAATCATGTTTCCTGTTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGGGCAGAGGAGGGGGCTaGGGCGATGTGACTGCCTGG +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGGRGGG*GDVTAW
Trigger: CCAGGCAGTCACATCGCCTCAGCCCCCTCCTCTGCC...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGGGGGCTGAGGCGATGTaGCTGCCTGGTGGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGGAEAM*LPGGAA
Trigger: AGCAGCTCCACCAGGCAGTCACATCGCCTCAGCCCC...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
68% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
3UTR CAA 72 bp CGTGACGGGGCGGCATGTGGAACAGCCCCACACTTGTaGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: RDGAACGTAPHL*QAQSGRPQAPS
Trigger: GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCACATGCCGCCCCGTCACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGGGAGCGGCCAGGAGGTaGAAGTGGCACCTCATAGAG +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGGAARR*KWHLIE
Trigger: CTCTATGAGGTGCCACTTCCACCTCCTGGCCGCTCC...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCCAGTGGTGCAGGAGGTaGTCTCTGGCTCCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSQWCRR*SLAPRH
Trigger: GTGCCTGGGAGCCAGAGATCACCTCCTGCACCACTG...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGTCTGTGTGCTGCTTCTaGCGGTCTTTCCGCCTCCAC +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGSVCCF*RSFRLH
Trigger: GTGGAGGCGGAAAGACCGGCAGAAGCAGCACACAGA...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGAGGCGATGTGACTGCCTaGTGGAGCTGCTGCAGCACA +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGGDVTA*WSCCST
Trigger: TGTGCTGCAGCAGCTCCACCAGGCAGTCACATCGCC...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGCCACTTGTTGCTGGCTaGCCCGGTGCAAAGCACATC +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGPLVAG*PGAKHI
Trigger: GATGTGCTTTGCACCGGGCCAGCCAGCAACAAGTGG...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGACAATCTGGACAGTGGTaGGCTTCCCCAGGTTCTGGC +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGQSGQW*ASPGSG
Trigger: GCCAGAACCTGGGGAAGCTCACCACTGTCCAGATTG...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCCTGAGGCGATGTGACTaGCTGGTGGAGCTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSLRRCD*LVELLQ
Trigger: CTGCAGCAGCTCCACCAGGCAGTCACATCGCCTCAG...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGGGTCATCCAGGCCGTTaGAATGCAAGCCCATCAGGT +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGGHPGR*NASPSG
Trigger: ACCTGATGGGCTTGCATTCCAACGGCCTGGATGACC...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGATGTCCAGCCCGCAGATaGCAAAATAGTCGGCGAAGC +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGCPARR*QNSRRS
Trigger: GCTTCGCCGACTATTTTGTCATCTGCGGGCTGGACA...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGTTGGACAGTTTGGGCTaGCGGATGGTACTGCCCATA +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGLDSLG*RMVLPI
Trigger: TATGGGCAGTACCATCCGTCAGCCCAAACTGTCCAA...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGGAGGCAGCTCCAACTTaGAGCGGTCATCCAGGCCGT +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQEAAPT*SGHPGR
Trigger: ACGGCCTGGATGACCGCTCCAAGTTGGAGCTGCCTC...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGATTGTCCACTTGTTGCTaGCTGGCCCGGTGCAAAGCA +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGLSTCC*LARCKA
Trigger: TGCTTTGCACCGGGCCAGCCAGCAACAAGTGGACAA...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGAGAGGTTGGACAGTTTaGGCTGACGGATGGTACTGC +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGRGWTV*ADGWYC
Trigger: GCAGTACCATCCGTCAGCCCAAACTGTCCAACCTCT...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGCTGATGGAGAGAGGTTaGACAGTTTGGGCTGACGGA +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGLMERG*TVWADG
Trigger: TCCGTCAGCCCAAACTGTCCAACCTCTCTCCATCAG...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGATCCCCAATGGACTCCTaGATCTGCCCAGTGTTCAGC +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGSPMDS*ICPVFS
Trigger: GCTGAACACTGGGCAGATCCAGGAGTCCATTGGGGA...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGGATCAGCCTGGGTCTTaGATGCCAGCCCTTTGGGCA +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQDQPGS*MPALWA
Trigger: TGCCCAAAGGGCTGGCATTCAAGACCCAGGCTGATC...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCCTCAGGTAGGGAAGTaGGCAGCTCCCCAACAAGCA +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQPQVGK*AAPQQA
Trigger: TGCTTGTTGGGGAGCTGCTCACTTCCCTACCTGAGG...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGAGCTTGGTCCCAGGAATaGCTTCACCATCTTCCATGC +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGAWSQE*LHHLPC
Trigger: GCATGGAAGATGGTGAAGGCATTCCTGGGACCAAGC...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGGACAGTCGCACCCATaGTCTGGCTTTTCCCACATC +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSGQSHP*SGFSHI
Trigger: GATGTGGGAAAAGCCAGAGCATGGGTGCGACTGTCC...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGATGACACTGGGGGACTaGTGTAGTGGCGGAGTGCGA +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQMTLGD*CSGGVR
Trigger: TCGCACTCCGCCACTACAGCAGTCCCCCAGTGTCAT...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGGATGTGACTGCCTGGTaGAGCTGCTGCAGCACACTC +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQDVTAW*SCCSTL
Trigger: GAGTGTGCTGCAGCAGCTCCACCAGGCAGTCACATC...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCTCCCCAATGGACTCCTaGATCTGCCCAGTGTTCAGC +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSSPMDS*ICPVFS
Trigger: GCTGAACACTGGGCAGATCCAGGAGTCCATTGGGGA...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGTCAGCAAGTGGAGCATaGAGGACATCATACTCAGCA +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGSASGA*RTSYSA
Trigger: TGCTGAGTATGATGTCCTTCATGCTCCACTTGCTGA...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCCTGAGGCGATGTGACTaGCTGGTGGAGCTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGLRRCD*LVELLQ
Trigger: CTGCAGCAGCTCCACCAGGCAGTCACATCGCCTCAG...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCATGTTCACCTCCCCATaGCCCAGCTCCACGGCCTCT +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVMFTSP*PSSTAS
Trigger: AGAGGCCGTGGAGCTGGGGCATGGGGAGGTGAACAT...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCATGTTCACCTCCCCATaGCCCAGCTCCACGGCCTCT +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGMFTSP*PSSTAS
Trigger: AGAGGCCGTGGAGCTGGGGCATGGGGAGGTGAACAT...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGACGTCCTCATACATGTaGGCAGTGATGGGGCAGTCG +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQTSSYM*AVMGQS
Trigger: CGACTGCCCCATCACTGCGCACATGTATGAGGACGT...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCCACTTGTTGCTGGCTaGCCCGGTGCAAAGCACATC +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPPLVAG*PGAKHI
Trigger: GATGTGCTTTGCACCGGGCCAGCCAGCAACAAGTGG...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGTTGTCCACTTGTTGCTaGCTGGCCCGGTGCAAAGCA +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQLSTCC*LARCKA
Trigger: TGCTTTGCACCGGGCCAGCCAGCAACAAGTGGACAA...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGAACTTCCAGTTGGTCTaGGCAATGACTGATGGAGAG +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGNFQLV*AMTDGE
Trigger: CTCTCCATCAGTCATTGCCCAGACCAACTGGAAGTT...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTCGCACCCATGCTCTaGCTTTTCCCACATCAGTCT +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSVAPML*LFPHQS
Trigger: AGACTGATGTGGGAAAAGCCAGAGCATGGGTGCGAC...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCGCAGGAGGTGATCTCTaGCTCCCAGGCACACCAGCA +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVAGGDL*LPGTPA
Trigger: TGCTGGTGTGCCTGGGAGCCAGAGATCACCTCCTGC...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGATTCCTACTGCATCCTaGTCAAAGGGATTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGIPTAS*SKGFQS
Trigger: AGACTGGAATCCCTTTGATCAGGATGCAGTAGGAAT...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCGATCAGCCTGGGTCTTaGATGCCAGCCCTTTGGGCA +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVDQPGS*MPALWA
Trigger: TGCCCAAAGGGCTGGCATTCAAGACCCAGGCTGATC...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAGGGGCTGAGGCGATGTaGCTGCCTGGTGGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLGAEAM*LPGGAA
Trigger: AGCAGCTCCACCAGGCAGTCACATCGCCTCAGCCCC...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCTCTGTTCCCTGTTGGTaGACCAGGACTCCTTATCCT +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSSVPCW*TRTPYP
Trigger: AGGATAAGGAGTCCTGGTTCACCAACAGGGAACAGA...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCGGTCTGGGCAATGACTaGTGGAGAGAGGTTGGACAG +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPGLGND*WREVGQ
Trigger: CTGTCCAACCTCTCTCCATCAGTCATTGCCCAGACC...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTGTGTGCTGCTTCTaGCGGTCTTTCCGCCTCCAC +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVSVCCF*RSFRLH
Trigger: GTGGAGGCGGAAAGACCGGCAGAAGCAGCACACAGA...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGGAAATTTGCCGTCCTTaGCAATGTTCCGGGGCGTGT +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQEICRP*QCSGAC
Trigger: ACACGCCCCGGAACATTGGCAAGGACGGCAAATTTC...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGACGTCTCAATGGCGTCTaGTCAAAATTTTCTCCCGAC +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGRLNGV*SKFSPD
Trigger: GTCGGGAGAAAATTTTGAGCAGACGCCATTGAGACG...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCAAAGGCATGGAACTGTaGCTCCCTGGGATCAGCCTG +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPKGMEL*LPGISL
Trigger: CAGGCTGATCCCAGGGAGCCACAGTTCCATGCCTTT...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCGATGTGACTGCCTGGTaGAGCTGCTGCAGCACACTC +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGDVTAW*SCCSTL
Trigger: GAGTGTGCTGCAGCAGCTCCACCAGGCAGTCACATC...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCGGTCATCCAGGCCGTTaGAATGCAAGCCCATCAGGT +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPGHPGR*NASPSG
Trigger: ACCTGATGGGCTTGCATTCCAACGGCCTGGATGACC...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGCTACCAGCATCCTCTTaGTCTTGTTTCGACATTCCT +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGLPASS*SCFDIP
Trigger: AGGAATGTCGAAACAAGACCAAGAGGATGCTGGTAG...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCGGGCTCAGGCTGATCTaGCAGGAAGGATGCTTTATC +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPGLRLI*QEGCFI
Trigger: GATAAAGCATCCTTCCTGTCAGATCAGCCTGAGCCC...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTTCCTCAGGGGAGACATaGCGGCACTGGCATCAGACT +
Preference number: 4 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLSSGET*RHWHQT
Trigger: AGTCTGATGCCAGTGCCGTCATGTCTCCCCTGAGGA...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGGGGTCTGCATTGCACTaGAGATTTGCTTGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQGSALH*RFACWS
Trigger: TGACCAGCAAGCAAATCTGCAGTGCAATGCAGACCC...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCTCCAGGCCGTTGGAATaGAAGCCCATCAGGTATGGT +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPSRPLE*KPIRYG
Trigger: ACCATACCTGATGGGCTTGCATTCCAACGGCCTGGA...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCGCAAGTGTTCTGTGTaGTGCTTCTGCCGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPRKCSV*CFCRSF
Trigger: GAAAGACCGGCAGAAGCAGCACACAGAACACTTGCG...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCCCAGCATCTGAAATTTaGCGTCCTTGCCAATGTTCC +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSPASEI*RPCQCS
Trigger: GGAACATTGGCAAGGACGGCAAATTTCAGATGCTGG...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCACGTCCTCATACATGTaGGCAGTGATGGGGCAGTCG +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVTSSYM*AVMGQS
Trigger: CGACTGCCCCATCACTGCGCACATGTATGAGGACGT...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGATCCACCATCAGCAAGTaGAGCATGAAGGACATCATA +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGSTISK*SMKDII
Trigger: TATGATGTCCTTCATGCTCCACTTGCTGATGGTGGA...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGACATGTCAAGAAGATGTaGGTGAACTGCAGTATGGTC +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGHVKKM*VNCSMV
Trigger: GACCATACTGCAGTTCACCCACATCTTCTTGACATG...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCAACTTCCAGTTGGTCTaGGCAATGACTGATGGAGAG +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSNFQLV*AMTDGE
Trigger: CTCTCCATCAGTCATTGCCCAGACCAACTGGAAGTT...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCTCCTTCAGTCGTACTTaGAATGAAAGGGCTGGCACC +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPSFSRT*NERAGT
Trigger: GGTGCCAGCCCTTTCATTTCAAGTACGACTGAAGGA...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080437.13
CDS-3UTR TCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCATGGGACCACAAAGCTaGTTTCCCCTGCTTCACTTG +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPMGPQS*FPLLHL
Trigger: CAAGTGAAGCAGGGGAAATCAGCTTTGTGGTCCCAT...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGTCCTCAGGGGAGACATaGCGGCACTGGCATCAGACT +
Preference number: 4 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLSSGET*RHWHQT
Trigger: AGTCTGATGCCAGTGCCGTCATGTCTCCCCTGAGGA...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGATTCCCACATCAGTCTTaGTTTCCCCAATATTCTGGA +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGFPHQS*FPQYSG
Trigger: TCCAGAATATTGGGGAAATCAAGACTGATGTGGGAA...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTCAGTGGTGCAGGAGGTaGTCTCTGGCTCCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPQWCRR*SLAPRH
Trigger: GTGCCTGGGAGCCAGAGATCACCTCCTGCACCACTG...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGAATTGCACTGCAGATTTaGTTGCTGGTCACTTCTTCA +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGIALQI*LLVTSS
Trigger: TGAAGAAGTGACCAGCAAGCAAATCTGCAGTGCAAT...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCTTTCCGCCTCCACTGTaGAGGGGCATTCCTTTTTGT +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPFPPPL*RGIPFC
Trigger: ACAAAAAGGAATGCCCCTGCACAGTGGAGGCGGAAA...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCGCTGACGGATGGTACTaGCCATATTCCTGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGADGWY*PYSWLP
Trigger: AGGAAGCCAGGAATATGGGCAGTACCATCCGTCAGC...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGAAAGCTGATTTCCCCTaGTTCACTTGTAGCCCATGG +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQKADFP*FTCSPW
Trigger: CCATGGGCTACAAGTGAAGCAGGGGAAATCAGCTTT...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCCACAATGCCATTGACTaGCTCCCCAATGGACTCCTG +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGHNAID*LPNGLL
Trigger: CAGGAGTCCATTGGGGAGGCAGTCAATGGCATTGTG...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGTCAGGTTTATGGAAGTaGTTCACAATGCCATTGACT +
Preference number: 4 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGSGLWK*FTMPLT
Trigger: AGTCAATGGCATTGTGAAGCACTTCCATAAACCTGA...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCGAAATTTGCCGTCCTTaGCAATGTTCCGGGGCGTGT +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVEICRP*QCSGAC
Trigger: ACACGCCCCGGAACATTGGCAAGGACGGCAAATTTC...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCTCTTCCATGCCACTCTaGTCTCCACCATCAGCAAGT +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPSSMPL*SPPSAS
Trigger: ACTTGCTGATGGTGGAGACCAGAGTGGCATGGAAGA...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAGGCGATGTGACTGCCTaGTGGAGCTGCTGCAGCACA +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLGDVTA*WSCCST
Trigger: TGTGCTGCAGCAGCTCCACCAGGCAGTCACATCGCC...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCTTGAGGCAAGTCCTCTaGCAACTCAATGAAGTGGTT +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSLRQVL*QLNEVV
Trigger: AACCACTTCATTGAGTTGCCAGAGGACTTGCCTCAA...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCTTCTTGGTGAGCTCATaGTCTGAAAGAAGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSFLVSS*SERSCF
Trigger: GAAGCAGCTTCTTTCAGACCATGAGCTCACCAAGAA...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGAGCCCAGCTTCTTGCTTaGTACAATCAAAATGTGGTA +
Preference number: 4 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGAQLLA*YNQNVV
Trigger: TACCACATTTTGATTGTACCAAGCAAGAAGCTGGGC...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTCTAGCACATTCCTaGGGATCTGCAGGATCTGGG +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVSLAHS*GSAGSG
Trigger: CCCAGATCCTGCAGATCCCCAGGAATGTGCTAGAGA...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATGGCAGAGGAGGGGGCTaGGGCGATGTGACTGCCTGG +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDGRGGG*GDVTAW
Trigger: CCAGGCAGTCACATCGCCTCAGCCCCCTCCTCTGCC...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCAGTTTGTTGGGAAATTaGGGCAAGTCCTCTGGCAAC +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPSLLGN*GKSSGN
Trigger: GTTGCCAGAGGACTTGCCTCAATTTCCCAACAAACT...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCTCTGTTCCCTGTTGGTaGACCAGGACTCCTTATCCT +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGSVPCW*TRTPYP
Trigger: AGGATAAGGAGTCCTGGTTCACCAACAGGGAACAGA...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCCTTCACCATCTTCCATaGCACTCTGGTCTCCACCAT +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVLHHLP*HSGLHH
Trigger: ATGGTGGAGACCAGAGTGGCATGGAAGATGGTGAAG...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTTCCAGGCCGTTGGAATaGAAGCCCATCAGGTATGGT +
Preference number: 4 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLSRPLE*KPIRYG
Trigger: ACCATACCTGATGGGCTTGCATTCCAACGGCCTGGA...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTATGCTGGCTGGCCCGGTaGAAAGCACATCAGACTGCA +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLCWLAR*KAHQTA
Trigger: TGCAGTCTGATGTGCTTTGCACCGGGCCAGCCAGCA...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGAGCCGCCCAGCTTCTTaGTTGGTACAATCAAAATGT +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQSRPAS*LVQSKC
Trigger: ACATTTTGATTGTACCAAGCAAGAAGCTGGGCGGCT...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGGAAGGTCACAGAGGCTaGCAATCAAAGTGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQEGHRG*QSKCSL
Trigger: AAGAGAACACTTTGATTGCCAGCCTCTGTGACCTTC...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCGTAATTTCTTCTCCATaGACAGTCGCACCCATGCTC +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPVISSP*TVAPML
Trigger: GAGCATGGGTGCGACTGTCCATGGAGAAGAAATTAC...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCAGCCCAGAATTATCATaGCCAATCTGGACAGTGGTG +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPSPELS*PIWTVV
Trigger: CACCACTGTCCAGATTGGCCATGATAATTCTGGGCT...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTATGTCCAGCCCGCAGATaGCAAAATAGTCGGCGAAGC +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLCPARR*QNSRRS
Trigger: GCTTCGCCGACTATTTTGTCATCTGCGGGCTGGACA...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCCTGGCTTTAGAAGCCTaGATGTACTGGCATAATGCC +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVLALEA*MYWHNA
Trigger: GGCATTATGCCAGTACATTCAGGCTTCTAAAGCCAG...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080437.13
CDS-3UTR TCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGTTCCCACATCAGTCTTaGTTTCCCCAATATTCTGGA +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQFPHQS*FPQYSG
Trigger: TCCAGAATATTGGGGAAATCAAGACTGATGTGGGAA...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTCAATCTGGACAGTGGTaGGCTTCCCCAGGTTCTGGC +
Preference number: 4 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPQSGQW*ASPGSG
Trigger: GCCAGAACCTGGGGAAGCTCACCACTGTCCAGATTG...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTGGGTCTGCATTGCACTaGAGATTTGCTTGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLGSALH*RFACWS
Trigger: TGACCAGCAAGCAAATCTGCAGTGCAATGCAGACCC...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTCAGCACACTCCGACATaGCTTCATGAAAGACATGGG +
Preference number: 4 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLQHTPT*LHERHG
Trigger: CCCATGTCTTTCATGAAGGCATGTCGGAGTGTGCTG...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGAAGTGTTCTGTGTGCTaGTTCTGCCGGTCTTTCCGC +
Preference number: 4 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLKCSVC*FCRSFR
Trigger: GCGGAAAGACCGGCAGAAGCAGCACACAGAACACTT...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCAAAGATGCAAACATCTaGGTCTCTAGGAATCTTGAG +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSKDANI*VSRNLE
Trigger: CTCAAGATTCCTAGAGACCCAGATGTTTGCATCTTT...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGATGTACTTCTCTCTCTaGTCATTGTCTAAGCGCAAG +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQMYFSL*SLSKRK
Trigger: CTTGCGCTTAGACAATGACCAGAGAGAGAAGTACAT...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTACCAGCATCCTCTTaGTCTTGTTTCGACATTCCT +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPLPASS*SCFDIP
Trigger: AGGAATGTCGAAACAAGACCAAGAGGATGCTGGTAG...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGGTCGCACCCATGCTCTaGCTTTTCCCACATCAGTCT +
Preference number: 4 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLVAPML*LFPHQS
Trigger: AGACTGATGTGGGAAAAGCCAGAGCATGGGTGCGAC...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGTTAGCTGGTAAATCCTaGGCTCTTCTTCATCACATT +
Preference number: 4 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQLAGKS*ALLHHI
Trigger: AATGTGATGAAGAAGAGCTCAGGATTTACCAGCTAA...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAGGGCTCAGGCTGATCTaGCAGGAAGGATGCTTTATC +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLGLRLI*QEGCFI
Trigger: GATAAAGCATCCTTCCTGTCAGATCAGCCTGAGCCC...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCTCAAGAAGATGTGGGTaGACTGCAGTATGGTCAATT +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPSRRCG*TAVWSI
Trigger: AATTGACCATACTGCAGTTCACCCACATCTTCTTGA...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTTCACCATCTTCCATaGCACTCTGGTCTCCACCAT +
Preference number: 4 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLLHHLP*HSGLHH
Trigger: ATGGTGGAGACCAGAGTGGCATGGAAGATGGTGAAG...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCTTCAATTGCTTTTTCTaGTTCATCCACAGTGGTACA +
Preference number: 4 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSFNCFF*FIHSGT
Trigger: TGTACCACTGTGGATGAAGCAGAAAAAGCAATTGAA...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGTTTCCGCCTCCACTGTaGAGGGGCATTCCTTTTTGT +
Preference number: 4 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLFPPPL*RGIPFC
Trigger: ACAAAAAGGAATGCCCCTGCACAGTGGAGGCGGAAA...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTAAAGCTGATTTCCCCTaGTTCACTTGTAGCCCATGG +
Preference number: 4 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLKADFP*FTCSPW
Trigger: CCATGGGCTACAAGTGAAGCAGGGGAAATCAGCTTT...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTACACAATGCCATTGACTaGCTCCCCAATGGACTCCTG +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLHNAID*LPNGLL
Trigger: CAGGAGTCCATTGGGGAGGCAGTCAATGGCATTGTG...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTAAAGGCATGGAACTGTaGCTCCCTGGGATCAGCCTG +
Preference number: 4 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPKGMEL*LPGISL
Trigger: CAGGCTGATCCCAGGGAGCCACAGTTCCATGCCTTT...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCATAGAGGAAGCTCATTaGTACTTGGTCTCTGGCAGA +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGIEEAH*YLVSGR
Trigger: TCTGCCAGAGACCAAGTACCAATGAGCTTCCTCTAT...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCCATGTCAAGAAGATGTaGGTGAACTGCAGTATGGTC +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGHVKKM*VNCSMV
Trigger: GACCATACTGCAGTTCACCCACATCTTCTTGACATG...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCGCTGCTTCAGGTGTCTaGACAGTAATTTCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVAASGV*TVISSP
Trigger: TGGAGAAGAAATTACTGTCCAGACACCTGAAGCAGC...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCTTCTTGGTGAGCTCATaGTCTGAAAGAAGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGFLVSS*SERSCF
Trigger: GAAGCAGCTTCTTTCAGACCATGAGCTCACCAAGAA...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGGCAGGAGGTGATCTCTaGCTCCCAGGCACACCAGCA +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWAGGDL*LPGTPA
Trigger: TGCTGGTGTGCCTGGGAGCCAGAGATCACCTCCTGC...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTGCACAAGTAAAAAGCTaGAACACATTCTCCACCCCA +
Preference number: 4 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLAQVKS*NTFSTP
Trigger: TGGGGTGGAGAATGTGTTTCAGCTTTTTACTTGTGC...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGTCTCTTCCACACCGGTaGTGTTCACCTCCCCATGCC +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWSLPHR*CSPPHA
Trigger: GGCATGGGGAGGTGAACATCACCGGTGTGGAAGAGA...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAATGGGACCACAAAGCTaGTTTCCCCTGCTTCACTTG +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLMGPQS*FPLLHL
Trigger: CAAGTGAAGCAGGGGAAATCAGCTTTGTGGTCCCAT...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGCCTCAGGTAGGGAAGTaGGCAGCTCCCCAACAAGCA +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWPQVGK*AAPQQA
Trigger: TGCTTGTTGGGGAGCTGCTCACTTCCCTACCTGAGG...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTGCTTGGTCCCAGGAATaGCTTCACCATCTTCCATGC +
Preference number: 4 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPAWSQE*LHHLPC
Trigger: GCATGGAAGATGGTGAAGGCATTCCTGGGACCAAGC...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCGCTTTATCAAAGTTCTaGATCTGTTCCCTGTTGGTG +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGALSKF*ICSLLV
Trigger: CACCAACAGGGAACAGATGCAGAACTTTGATAAAGC...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TGCGGCCATGCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCTCAGGTTTATGGAAGTaGTTCACAATGCCATTGACT +
Preference number: 4 (lower is better)
Translates to: CGHAREAPASKQAAPTLPSGLWK*FTMPLT
Trigger: AGTCAATGGCATTGTGAAGCACTTCCATAAACCTGA...GGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGCATGGCCGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCAAGCTCATTGGTACTTaGTCTCTGGCAGATTATTGG +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVKLIGT*SLADYW
Trigger: CCAATAATCTGCCAGAGACCAAGTACCAATGAGCTT...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATGAGGCAGCTCCAACTTaGAGCGGTCATCCAGGCCGT +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDEAAPT*SGHPGR
Trigger: ACGGCCTGGATGACCGCTCCAAGTTGGAGCTGCCTC...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTATCTCAGAGACCTCCTaGACAAACTCCAGTTTGTTG +
Preference number: 4 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLISETS*TNSSLL
Trigger: CAACAAACTGGAGTTTGTCCAGGAGGTCTCTGAGAT...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCATTCCACAAGCCACTTaGCATACAGCCCAGAATTAT +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGIPQAT*HTAQNY
Trigger: ATAATTCTGGGCTGTATGCCAAGTGGCTTGTGGAAT...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCATTCCACAAGCCACTTaGCATACAGCCCAGAATTAT +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVIPQAT*HTAQNY
Trigger: ATAATTCTGGGCTGTATGCCAAGTGGCTTGTGGAAT...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGGCACAAGTAAAAAGCTaGAACACATTCTCCACCCCA +
Preference number: 4 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLAQVKS*NTFSTP
Trigger: TGGGGTGGAGAATGTGTTTCAGCTTTTTACTTGTGC...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTTCAAGAAGATGTGGGTaGACTGCAGTATGGTCAATT +
Preference number: 4 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLSRRCG*TAVWSI
Trigger: AATTGACCATACTGCAGTTCACCCACATCTTCTTGA...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGATGTGCCTCATATCCTaGATTAGGGAAATCCTCAGG +
Preference number: 4 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLMCLIS*IREILR
Trigger: CCTGAGGATTTCCCTAATTCAGGATATGAGGCACAT...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTATTGCACTGCAGATTTaGTTGCTGGTCACTTCTTCA +
Preference number: 4 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLIALQI*LLVTSS
Trigger: TGAAGAAGTGACCAGCAAGCAAATCTGCAGTGCAAT...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTCAGCACACTCCGACATaGCTTCATGAAAGACATGGG +
Preference number: 4 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPQHTPT*LHERHG
Trigger: CCCATGTCTTTCATGAAGGCATGTCGGAGTGTGCTG...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATTGCTGGCTGGCCCGGTaGAAAGCACATCAGACTGCA +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDCWLAR*KAHQTA
Trigger: TGCAGTCTGATGTGCTTTGCACCGGGCCAGCCAGCA...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGGGACAGTCGCACCCATaGTCTGGCTTTTCCCACATC +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWGQSHP*SGFSHI
Trigger: GATGTGGGAAAAGCCAGAGCATGGGTGCGACTGTCC...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATATGACACTGGGGGACTaGTGTAGTGGCGGAGTGCGA +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDMTLGD*CSGGVR
Trigger: TCGCACTCCGCCACTACAGCAGTCCCCCAGTGTCAT...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCCTCATAATAGGTTTGTaGTTTCTCCAGGAAATCCCA +
Preference number: 4 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGLIIGL*FLQEIP
Trigger: TGGGATTTCCTGGAGAAAGCACAAACCTATTATGAG...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTTTCACTTGTAGCCCATaGCTCCAGATCCTCTCCAGA +
Preference number: 4 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPFTCSP*LQILSR
Trigger: TCTGGAGAGGATCTGGAGCCATGGGCTACAAGTGAA...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGGCTGCTTCAGGTGTCTaGACAGTAATTTCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLAASGV*TVISSP
Trigger: TGGAGAAGAAATTACTGTCCAGACACCTGAAGCAGC...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTTCTCAGGTTTATaGAAGTGCTTCACAATGCCA +
Preference number: 4 (lower is better)
Translates to: AREAPASKQAAPTLPLSVSFSGL*KCFTMP
Trigger: TGGCATTGTGAAGCACTTCCATAAACCTGAGAAAGA...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGTTGGACAGTTTGGGCTaGCGGATGGTACTGCCCATA +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWLDSLG*RMVLPI
Trigger: TATGGGCAGTACCATCCGTCAGCCCAAACTGTCCAA...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGTTTGAAGAGCCGGGGTaGTTTAAATCCATGCTGAAA +
Preference number: 4 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLFEEPG*FKSMLK
Trigger: TTTCAGCATGGATTTAAATCACCCCGGCTCTTCAAA...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTAAGATGTGGGTGAACTaGAGTATGGTCAATTTTTGC +
Preference number: 4 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLKMWVN*SMVNFC
Trigger: GCAAAAATTGACCATACTGCAGTTCACCCACATCTT...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGAAGTGTTCTGTGTGCTaGTTCTGCCGGTCTTTCCGC +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWKCSVC*FCRSFR
Trigger: GCGGAAAGACCGGCAGAAGCAGCACACAGAACACTT...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGCGCAAGTGTTCTGTGTaGTGCTTCTGCCGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWRKCSV*CFCRSF
Trigger: GAAAGACCGGCAGAAGCAGCACACAGAACACTTGCG...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTTGGTCTGAAAGAAGCTaGTTCAGGTGTCTGGACAGT +
Preference number: 4 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPWSERS*FRCLDS
Trigger: ACTGTCCAGACACCTGAAGCAGCTTCTTTCAGACCA...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTCCAGCATCTGAAATTTaGCGTCCTTGCCAATGTTCC +
Preference number: 4 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPPASEI*RPCQCS
Trigger: GGAACATTGGCAAGGACGGCAAATTTCAGATGCTGG...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAATCTCAGAGACCTCCTaGACAAACTCCAGTTTGTTG +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLISETS*TNSSLL
Trigger: CAACAAACTGGAGTTTGTCCAGGAGGTCTCTGAGAT...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGCAGGACTCCTTATCCTaGCTGGGCTGGATGACAAAC +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWQDSLS*LGWMTN
Trigger: GTTTGTCATCCAGCCCAGCCAGGATAAGGAGTCCTG...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTACAGTGGTACACTTCTaGTACATAGATGTCCTAAGA +
Preference number: 4 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLTVVHF*YIDVLR
Trigger: TCTTAGGACATCTATGTACCAGAAGTGTACCACTGT...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAGAAGGTCACAGAGGCTaGCAATCAAAGTGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLEGHRG*QSKCSL
Trigger: AAGAGAACACTTTGATTGCCAGCCTCTGTGACCTTC...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATCAGTCGTACTTGAAATaGAAGGGCTGGCACCATCCC +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDQSYLK*KGWHHP
Trigger: GGGATGGTGCCAGCCCTTTCATTTCAAGTACGACTG...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080437.13
CDS-3UTR TCA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGTTAGCTGGTAAATCCTaGGCTCTTCTTCATCACATT +
Preference number: 4 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLLAGKS*ALLHHI
Trigger: AATGTGATGAAGAAGAGCTCAGGATTTACCAGCTAA...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATGCTTCACAATGCCATTaGCTGCCTCCCCAATGGACT +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDASQCH*LPPQWT
Trigger: AGTCCATTGGGGAGGCAGTCAATGGCATTGTGAAGC...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACAACTGCCTGGTGGAGCTaGTGCAGCACACTCCGACAT +
Preference number: 4 (lower is better)
Translates to: PVKHAHVYSCATLCQQETTAWWS*CSTLRH
Trigger: ATGTCGGAGTGTGCTGCAGCAGCTCCACCAGGCAGT...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTACAAACTCCAGTTTGTTaGGAAATTGAGGCAAGTCCT +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLQTPVC*EIEASP
Trigger: AGGACTTGCCTCAATTTCCCAACAAACTGGAGTTTG...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAGCCCAGCTTCTTGCTTaGTACAATCAAAATGTGGTA +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLAQLLA*YNQNVV
Trigger: TACCACATTTTGATTGTACCAAGCAAGAAGCTGGGC...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGTTATCATGGCCAATCTaGACAGTGGTGAGCTTCCCC +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWLSWPI*TVVSFP
Trigger: GGGGAAGCTCACCACTGTCCAGATTGGCCATGATAA...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGAGTTTGTTGGGAAATTaGGGCAAGTCCTCTGGCAAC +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWSLLGN*GKSSGN
Trigger: GTTGCCAGAGGACTTGCCTCAATTTCCCAACAAACT...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACAGGTCTGGGCAATGACTaGTGGAGAGAGGTTGGACAG +
Preference number: 4 (lower is better)
Translates to: PVKHAHVYSCATLCQQETGLGND*WREVGQ
Trigger: CTGTCCAACCTCTCTCCATCAGTCATTGCCCAGACC...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGTTCAATTGCTTTTTCTaGTTCATCCACAGTGGTACA +
Preference number: 4 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLFNCFF*FIHSGT
Trigger: TGTACCACTGTGGATGAAGCAGAAAAAGCAATTGAA...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTACTCATAATAGGTTTGTaGTTTCTCCAGGAAATCCCA +
Preference number: 4 (lower is better)
Translates to: PLAHLCVARESQIARIMLLIIGL*FLQEIP
Trigger: TGGGATTTCCTGGAGAAAGCACAAACCTATTATGAG...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTATGTACTTCTCTCTCTaGTCATTGTCTAAGCGCAAG +
Preference number: 4 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPMYFSL*SLSKRK
Trigger: CTTGCGCTTAGACAATGACCAGAGAGAGAAGTACAT...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATTTATCATGGCCAATCTaGACAGTGGTGAGCTTCCCC +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDLSWPI*TVVSFP
Trigger: GGGGAAGCTCACCACTGTCCAGATTGGCCATGATAA...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATTCAGCAAGTGGAGCATaGAGGACATCATACTCAGCA +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDSASGA*RTSYSA
Trigger: TGCTGAGTATGATGTCCTTCATGCTCCACTTGCTGA...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTTCTCTGGTAATGCTGTaGGTAGAGCAGTATTTGAAA +
Preference number: 4 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPSLVML*VEQYLK
Trigger: TTTCAAATACTGCTCTACTCACAGCATTACCAGAGA...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGGAGCGGCCAGGAGGTaGAAGTGGCACCTCATAGAG +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCGAARR*KWHLIE
Trigger: CTCTATGAGGTGCCACTTCCACCTCCTGGCCGCTCC...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGATAGAGGAAGCTCATTaGTACTTGGTCTCTGGCAGA +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWIEEAH*YLVSGR
Trigger: TCTGCCAGAGACCAAGTACCAATGAGCTTCCTCTAT...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTAAAGATGCAAACATCTaGGTCTCTAGGAATCTTGAG +
Preference number: 4 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPKDANI*VSRNLE
Trigger: CTCAAGATTCCTAGAGACCCAGATGTTTGCATCTTT...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATAGCCCAGAATTATCATaGCCAATCTGGACAGTGGTG +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDSPELS*PIWTVV
Trigger: CACCACTGTCCAGATTGGCCATGATAATTCTGGGCT...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTACTGCCTGGTGGAGCTaGTGCAGCACACTCCGACAT +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCTAWWS*CSTLRH
Trigger: ATGTCGGAGTGTGCTGCAGCAGCTCCACCAGGCAGT...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGGCTTTATCAAAGTTCTaGATCTGTTCCCTGTTGGTG +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWALSKF*ICSLLV
Trigger: CACCAACAGGGAACAGATGCAGAACTTTGATAAAGC...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGCAAACTCCAGTTTGTTaGGAAATTGAGGCAAGTCCT +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWQTPVC*EIEASP
Trigger: AGGACTTGCCTCAATTTCCCAACAAACTGGAGTTTG...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACATTCACTTGTAGCCCATaGCTCCAGATCCTCTCCAGA +
Preference number: 4 (lower is better)
Translates to: PVKHAHVYSCATLCQQETFTCSP*LQILSR
Trigger: TCTGGAGAGGATCTGGAGCCATGGGCTACAAGTGAA...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATGAACATTCAACAGTCTaGTCTTGTCTACCCTTGAGT +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDEHSTV*SCLPLS
Trigger: ACTCAAGGGTAGACAAGATCAGACTGTTGAATGTTC...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGCACTGCAGATTTGCTTaGTGGTCACTTCTTCATAAA +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWHCRFA*WSLLHK
Trigger: TTTATGAAGAAGTGACCAGCAAGCAAATCTGCAGTG...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGAAGATGTGGGTGAACTaGAGTATGGTCAATTTTTGC +
Preference number: 4 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWKMWVN*SMVNFC
Trigger: GCAAAAATTGACCATACTGCAGTTCACCCACATCTT...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACAGTAATTTCTTCTCCATaGACAGTCGCACCCATGCTC +
Preference number: 4 (lower is better)
Translates to: PVKHAHVYSCATLCQQETVISSP*TVAPML
Trigger: GAGCATGGGTGCGACTGTCCATGGAGAAGAAATTAC...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACAATTCCTACTGCATCCTaGTCAAAGGGATTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: PVKHAHVYSCATLCQQETIPTAS*SKGFQS
Trigger: AGACTGGAATCCCTTTGATCAGGATGCAGTAGGAAT...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACAATGTGCCTCATATCCTaGATTAGGGAAATCCTCAGG +
Preference number: 4 (lower is better)
Translates to: PVKHAHVYSCATLCQQETMCLIS*IREILR
Trigger: CCTGAGGATTTCCCTAATTCAGGATATGAGGCACAT...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCTTCACAATGCCATTaGCTGCCTCCCCAATGGACT +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCASQCH*LPPQWT
Trigger: AGTCCATTGGGGAGGCAGTCAATGGCATTGTGAAGC...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACAGCACAGCATTCCTACTaGATCCTGATCAAAGGGATT +
Preference number: 4 (lower is better)
Translates to: PVKHAHVYSCATLCQQETAQHSY*ILIKGI
Trigger: AATCCCTTTGATCAGGATGCAGTAGGAATGCTGTGC...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATCACTGCAGATTTGCTTaGTGGTCACTTCTTCATAAA +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDHCRFA*WSLLHK
Trigger: TTTATGAAGAAGTGACCAGCAAGCAAATCTGCAGTG...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACATTGAGGCAAGTCCTCTaGCAACTCAATGAAGTGGTT +
Preference number: 4 (lower is better)
Translates to: PVKHAHVYSCATLCQQETLRQVL*QLNEVV
Trigger: AACCACTTCATTGAGTTGCCAGAGGACTTGCCTCAA...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTAGAGGTTGGACAGTTTaGGCTGACGGATGGTACTGC +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCRGWTV*ADGWYC
Trigger: GCAGTACCATCCGTCAGCCCAAACTGTCCAACCTCT...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTCTGATGGAGAGAGGTTaGACAGTTTGGGCTGACGGA +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCLMERG*TVWADG
Trigger: TCCGTCAGCCCAAACTGTCCAACCTCTCTCCATCAG...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTTCTCTAGCACATTCCTaGGGATCTGCAGGATCTGGG +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCSLAHS*GSAGSG
Trigger: CCCAGATCCTGCAGATCCCCAGGAATGTGCTAGAGA...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATTCTTTCTCAGGTTTATaGAAGTGCTTCACAATGCCA +
Preference number: 4 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDSFSGL*KCFTMP
Trigger: TGGCATTGTGAAGCACTTCCATAAACCTGAGAAAGA...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTTGGTCTGAAAGAAGCTaGTTCAGGTGTCTGGACAGT +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCWSERS*FRCLDS
Trigger: ACTGTCCAGACACCTGAAGCAGCTTCTTTCAGACCA...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACAACAGTGGTACACTTCTaGTACATAGATGTCCTAAGA +
Preference number: 4 (lower is better)
Translates to: PVKHAHVYSCATLCQQETTVVHF*YIDVLR
Trigger: TCTTAGGACATCTATGTACCAGAAGTGTACCACTGT...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR GCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTAGCCGCCCAGCTTCTTaGTTGGTACAATCAAAATGT +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCSRPAS*LVQSKC
Trigger: ACATTTTGATTGTACCAAGCAAGAAGCTGGGCGGCT...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTTCCACCATCAGCAAGTaGAGCATGAAGGACATCATA +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCSTISK*SMKDII
Trigger: TATGATGTCCTTCATGCTCCACTTGCTGATGGTGGA...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGAACATTCAACAGTCTaGTCTTGTCTACCCTTGAGT +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCEHSTV*SCLPLS
Trigger: ACTCAAGGGTAGACAAGATCAGACTGTTGAATGTTC...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTTTTGAAGAGCCGGGGTaGTTTAAATCCATGCTGAAA +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCFEEPG*FKSMLK
Trigger: TTTCAGCATGGATTTAAATCACCCCGGCTCTTCAAA...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR TCA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTTCTCTGGTAATGCTGTaGGTAGAGCAGTATTTGAAA +
Preference number: 4 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCSLVML*VEQYLK
Trigger: TTTCAAATACTGCTCTACTCACAGCATTACCAGAGA...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 90 bp GTGGCGGAGTGCGACAAGGCCTCTCATCCACCTCAGGTAGGGAAGTaGGCAGCTCCCCAACAAGCACGCGCTCCAAGCTTCCGTCGTCCA +
Preference number: 5 (lower is better)
Translates to: VAECDKASHPPQVGK*AAPQQARAPSFRRP
Trigger: TGGACGACGGAAGCTTGGAGCGCGTGCTTGTTGGGGAGCTGCTCACTTCCCTACCTGAGGTGGATGAGAGGCCTTGTCGCACTCCGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGGTCATCCAGGCCGTaGGAATGCAAGCCCATCAGG +
Preference number: 5 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQRSSRP*ECKPIR
Trigger: CCTGATGGGCTTGCATTCCAACGGCCTGGATGACCG...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGCAGGGGCATTCCTTTTaGTCCACTTGTTGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGQGHSF*STCCWL
Trigger: CAGCCAGCAACAAGTGGACAAAAAGGAATGCCCCTG...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCTTGAAGCGCTGCAGCTaGGTCCCAGGAATGCCTTCA +
Preference number: 5 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSLKRCS*VPGMPS
Trigger: TGAAGGCATTCCTGGGACCAAGCTGCAGCGCTTCAA...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCTTCCTTTTTGTCCACTaGTTGCTGGCTGGCCCGGTG +
Preference number: 5 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSFLFVH*LLAGPV
Trigger: CACCGGGCCAGCCAGCAACAAGTGGACAAAAAGGAA...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGATGCTTCACAATGCCATaGACTGCCTCCCCAATGGAC +
Preference number: 5 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGCFTMP*TASPMD
Trigger: GTCCATTGGGGAGGCAGTCAATGGCATTGTGAAGCA...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGTTCCGGGGCGTGTTGTaGACTGCAGTGACAAAGCGG +
Preference number: 5 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQFRGVL*TAVTKR
Trigger: CCGCTTTGTCACTGCAGTCAACAACACGCCCCGGAA...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCTTGAATGCCAGCCCTTaGGGCATGCACAGCATTCCT +
Preference number: 5 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSLNASP*GMHSIP
Trigger: AGGAATGCTGTGCATGCCCAAAGGGCTGGCATTCAA...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCTTTTTGTCCACTTGTaGCTGGCTGGCCCGGTGCAA +
Preference number: 5 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQLFVHL*LAGPVQ
Trigger: TTGCACCGGGCCAGCCAGCAACAAGTGGACAAAAAG...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCTGCTTCACAATGCCATaGACTGCCTCCCCAATGGAC +
Preference number: 5 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSCFTMP*TASPMD
Trigger: GTCCATTGGGGAGGCAGTCAATGGCATTGTGAAGCA...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 90 bp GAAGGTCACAGAGGCTGGCAATCAAAGTGTTCTCTTCCACACCGGTaGTGTTCACCTCCCCATGCCCCAGCTCCACGGCCTCTCGACCCA +
Preference number: 5 (lower is better)
Translates to: EGHRGWQSKCSLPHR*CSPPHAPAPRPLDP
Trigger: TGGGTCGAGAGGCCGTGGAGCTGGGGCATGGGGAGGTGAACATCACCGGTGTGGAAGAGAACACTTTGATTGCCAGCCTCTGTGACCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp TTGTTGGGCGAGATGGTCACAAGTCTCCGGATGACACTGGGGGACTaGTGTAGTGGCGGAGTGCGACAAGGCCTCTCATCCACCTCAGGT +
Preference number: 5 (lower is better)
Translates to: LLGEMVTSLRMTLGD*CSGGVRQGLSSTSG
Trigger: ACCTGAGGTGGATGAGAGGCCTTGTCGCACTCCGCCACTACAGCAGTCCCCCAGTGTCATCCGGAGACTTGTGACCATCTCGCCCAACAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp TTGACGAGTGTGTGGTCCTTGATCAGCGCCACGTCCTCATACATGTaGGCAGTGATGGGGCAGTCGGCCAGCAAGGCTATCCAGTGGTGC +
Preference number: 5 (lower is better)
Translates to: LTSVWSLISATSSYM*AVMGQSASKAIQWC
Trigger: GCACCACTGGATAGCCTTGCTGGCCGACTGCCCCATCACTGCGCACATGTATGAGGACGTGGCGCTGATCAAGGACCACACACTCGTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTGGATCAGCCTGGGTCTaGAATGCCAGCCCTTTGGGC +
Preference number: 5 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLGSAWV*NASPLG
Trigger: GCCCAAAGGGCTGGCATTCAAGACCCAGGCTGATCC...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTCGGTCATCCAGGCCGTaGGAATGCAAGCCCATCAGG +
Preference number: 5 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLRSSRP*ECKPIR
Trigger: CCTGATGGGCTTGCATTCCAACGGCCTGGATGACCG...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCATACAGATCCACGGGTaGGCGGTGAACATGGAGCCG +
Preference number: 5 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGIQIHG*AVNMEP
Trigger: CGGCTCCATGTTCACCGCCAACCCGTGGATCTGTAT...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 90 bp TCAGCTTGGGCTTATTGTTGGGCGAGATGGTCACAAGTCTCCGGATaGCACTGGGGGACTGCTGTAGTGGCGGAGTGCGACAAGGCCTCT +
Preference number: 5 (lower is better)
Translates to: SAWAYCWARWSQVSG*HWGTAVVAECDKAS
Trigger: AGAGGCCTTGTCGCACTCCGCCACTACAGCAGTCCCCCAGTGTCATCCGGAGACTTGTGACCATCTCGCCCAACAATAAGCCCAAGCTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp CAAGTGTTCTGTGTGCTGCTTCTGCCGGTCTTTCCGCCTCCACTGTaGAGGGGCATTCCTTTTTGTCCACTTGTTGCTGGCTGGCCCGGT +
Preference number: 5 (lower is better)
Translates to: QVFCVLLLPVFPPPL*RGIPFCPLVAGWPG
Trigger: ACCGGGCCAGCCAGCAACAAGTGGACAAAAAGGAATGCCCCTGCACAGTGGAGGCGGAAAGACCGGCAGAAGCAGCACACAGAACACTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCCATTGCACTGCAGATTaGCTTGCTGGTCACTTCTTC +
Preference number: 5 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSHCTAD*LAGHFF
Trigger: GAAGAAGTGACCAGCAAGCAAATCTGCAGTGCAATG...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCTTCCTTTTTGTCCACTaGTTGCTGGCTGGCCCGGTG +
Preference number: 5 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGFLFVH*LLAGPV
Trigger: CACCGGGCCAGCCAGCAACAAGTGGACAAAAAGGAA...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGTGTGATGTTGAATTCTaGCAGGGTCTGCAGCACTCG +
Preference number: 5 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQCDVEF*QGLQHS
Trigger: CGAGTGCTGCAGACCCTGCAAGAATTCAACATCACA...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 90 bp CCTCTTGTCAGACACAAGCTCAGAAGCTCGGATCCTCTTCAGCTTTaGGGCGCTTTCGCTGCAATGGAGGTTCCCTTCAGGGGGAACGCC +
Preference number: 5 (lower is better)
Translates to: PLVRHKLRSSDPLQL*GAFAAMEVPFRGNA
Trigger: GGCGTTCCCCCTGAAGGGAACCTCCATTGCAGCGAAAGCGCCTCAAAGCTGAAGAGGATCCGAGCTTCTGAGCTTGTGTCTGACAAGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGAAGCTCATTGGTACTaGGTCTCTGGCAGATTATTG +
Preference number: 5 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSEAHWY*VSGRLL
Trigger: CAATAATCTGCCAGAGACCAAGTACCAATGAGCTTC...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCGGATCCTCTTCAGCTTaGAGGCGCTTTCGCTGCAAT +
Preference number: 5 (lower is better)
Translates to: AREAPASKQAAPTLPLSVGSSSA*RRFRCN
Trigger: ATTGCAGCGAAAGCGCCTCAAAGCTGAAGAGGATCC...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGACCAGACGTAGTTCAATaGCTTTTTCTGCTTCATCCA +
Preference number: 5 (lower is better)
Translates to: LQAQSGRPQAPSVRPCKGPDVVQ*LFLLHP
Trigger: TGGATGAAGCAGAAAAAGCAATTGAACTACGTCTGG...TCCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCCAGGGGCATTCCTTTTaGTCCACTTGTTGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGQGHSF*STCCWL
Trigger: CAGCCAGCAACAAGTGGACAAAAAGGAATGCCCCTG...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGCCCAGCTTCTTGCTaGGTACAATCAAAATGTGGT +
Preference number: 5 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQRPASC*VQSKCG
Trigger: ACCACATTTTGATTGTACCAAGCAAGAAGCTGGGCG...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCGTGCGGCCATGCAAGGGCAAATGAAGACATTTTaGAAGAGCCGGGGTGATTTA +
Preference number: 5 (lower is better)
Translates to: VAGSVWEATGSQRAAMQGQMKTF*KSRGDL
Trigger: TAAATCACCCCGGCTCTTCAAAAATGTCTTCATTTG...CCCTTGCATGGCCGCACGCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp CTGAAATTTGCCGTCCTTGCCAATGTTCCGGGGCGTGTTGTTGACTaGAGTGACAAAGCGGCAGAAATTGCGGGCCCGTGTGTGCCAGTT +
Preference number: 5 (lower is better)
Translates to: LKFAVLANVPGRVVD*SDKAAEIAGPCVPV
Trigger: AACTGGCACACACGGGCCCGCAATTTCTGCCGCTTTGTCACTGCAGTCAACAACACGCCCCGGAACATTGGCAAGGACGGCAAATTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 90 bp TCAGAAGCTCGGATCCTCTTCAGCTTTGAGGCGCTTTCGCTGCAATaGAGGTTCCCTTCAGGGGGAACGCCAAAGGCCATGAGGATCTCA +
Preference number: 5 (lower is better)
Translates to: SEARILFSFEALSLQ*RFPSGGTPKAMRIS
Trigger: TGAGATCCTCATGGCCTTTGGCGTTCCCCCTGAAGGGAACCTCCATTGCAGCGAAAGCGCCTCAAAGCTGAAGAGGATCCGAGCTTCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCGTCTCTGGCAGATTATaGGCCCATAGACCCCAGAAA +
Preference number: 5 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGVSGRL*AHRPQK
Trigger: TTTCTGGGGTCTATGGGCCAATAATCTGCCAGAGAC...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGGAAGCTCATTGGTACTaGGTCTCTGGCAGATTATTG +
Preference number: 5 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQEAHWY*VSGRLL
Trigger: CAATAATCTGCCAGAGACCAAGTACCAATGAGCTTC...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTGCATCTGTTCCCTGTaGGTGAACCAGGACTCCTTA +
Preference number: 5 (lower is better)
Translates to: AREAPASKQAAPTLPLSVCICSL*VNQDSL
Trigger: TAAGGAGTCCTGGTTCACCAACAGGGAACAGATGCA...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAATACAGATCCACGGGTaGGCGGTGAACATGGAGCCG +
Preference number: 5 (lower is better)
Translates to: PLAHLCVARESQIARIMLIQIHG*AVNMEP
Trigger: CGGCTCCATGTTCACCGCCAACCCGTGGATCTGTAT...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 90 bp TCTTGCAGGGTCTGCAGCACTCGGATCAAGGAATTGACGAGTGTGTaGTCCTTGATCAGCGCCACGTCCTCATACATGTGCGCAGTGATG +
Preference number: 5 (lower is better)
Translates to: SCRVCSTRIKELTSV*SLISATSSYMCAVM
Trigger: CATCACTGCGCACATGTATGAGGACGTGGCGCTGATCAAGGACCACACACTCGTCAATTCCTTGATCCGAGTGCTGCAGACCCTGCAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGTTGAATGCCAGCCCTTaGGGCATGCACAGCATTCCT +
Preference number: 5 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLLNASP*GMHSIP
Trigger: AGGAATGCTGTGCATGCCCAAAGGGCTGGCATTCAA...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTATTGAAGCGCTGCAGCTaGGTCCCAGGAATGCCTTCA +
Preference number: 5 (lower is better)
Translates to: PLAHLCVARESQIARIMLLKRCS*VPGMPS
Trigger: TGAAGGCATTCCTGGGACCAAGCTGCAGCGCTTCAA...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TGGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGAACTCAATGAAGTGGTaGTCAACATCCACAAAGCAG +
Preference number: 5 (lower is better)
Translates to: WNSPTLVAGSVWEATGSQNSMKW*STSTKQ
Trigger: CTGCTTTGTGGATGTTGACAACCACTTCATTGAGTT...CTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCCGCCCAGCTTCTTGCTaGGTACAATCAAAATGTGGT +
Preference number: 5 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGRPASC*VQSKCG
Trigger: ACCACATTTTGATTGTACCAAGCAAGAAGCTGGGCG...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCCATTCCACAAGCCACTaGGCATACAGCCCAGAATTA +
Preference number: 5 (lower is better)
Translates to: AREAPASKQAAPTLPLSVHSTSH*AYSPEL
Trigger: TAATTCTGGGCTGTATGCCAAGTGGCTTGTGGAATG...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTTTCCGGGGCGTGTTGTaGACTGCAGTGACAAAGCGG +
Preference number: 5 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPFRGVL*TAVTKR
Trigger: CCGCTTTGTCACTGCAGTCAACAACACGCCCCGGAA...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 90 bp TTTCGCTGCAATGGAGGTTCCCTTCAGGGGGAACGCCAAAGGCCATaGGGATCTCAGAGACCTCCTGGACAAACTCCAGTTTGTTGGGAA +
Preference number: 5 (lower is better)
Translates to: FRCNGGSLQGERQRP*GSQRPPGQTPVCWE
Trigger: TTCCCAACAAACTGGAGTTTGTCCAGGAGGTCTCTGAGATCCTCATGGCCTTTGGCGTTCCCCCTGAAGGGAACCTCCATTGCAGCGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp TCTCTCTGGTCATTGTCTAAGCGCAAGTGTTCTGTGTGCTGCTTCTaGCGGTCTTTCCGCCTCCACTGTGCAGGGGCATTCCTTTTTGTC +
Preference number: 5 (lower is better)
Translates to: SLWSLSKRKCSVCCF*RSFRLHCAGAFLFV
Trigger: GACAAAAAGGAATGCCCCTGCACAGTGGAGGCGGAAAGACCGGCAGAAGCAGCACACAGAACACTTGCGCTTAGACAATGACCAGAGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp TACTTCTCTCTCTGGTCATTGTCTAAGCGCAAGTGTTCTGTGTGCTaGTTCTGCCGGTCTTTCCGCCTCCACTGTGCAGGGGCATTCCTT +
Preference number: 5 (lower is better)
Translates to: YFSLWSLSKRKCSVC*FCRSFRLHCAGAFL
Trigger: AAGGAATGCCCCTGCACAGTGGAGGCGGAAAGACCGGCAGAAGCAGCACACAGAACACTTGCGCTTAGACAATGACCAGAGAGAGAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp ATGTACTTCTCTCTCTGGTCATTGTCTAAGCGCAAGTGTTCTGTGTaGTGCTTCTGCCGGTCTTTCCGCCTCCACTGTGCAGGGGCATTC +
Preference number: 5 (lower is better)
Translates to: MYFSLWSLSKRKCSV*CFCRSFRLHCAGAF
Trigger: GAATGCCCCTGCACAGTGGAGGCGGAAAGACCGGCAGAAGCAGCACACAGAACACTTGCGCTTAGACAATGACCAGAGAGAGAAGTACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp TGCTTCACAATGCCATTGACTGCCTCCCCAATGGACTCCTGGATCTaGCCAGTGTTCAGCTTGGGCTTATTGTTGGGCGAGATGGTCACA +
Preference number: 5 (lower is better)
Translates to: CFTMPLTASPMDSWI*PVFSLGLLLGEMVT
Trigger: TGTGACCATCTCGCCCAACAATAAGCCCAAGCTGAACACTGGGCAGATCCAGGAGTCCATTGGGGAGGCAGTCAATGGCATTGTGAAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 90 bp TGGAAGTGCTTCACAATGCCATTGACTGCCTCCCCAATGGACTCCTaGATCTGCCCAGTGTTCAGCTTGGGCTTATTGTTGGGCGAGATG +
Preference number: 5 (lower is better)
Translates to: WKCFTMPLTASPMDS*ICPVFSLGLLLGEM
Trigger: CATCTCGCCCAACAATAAGCCCAAGCTGAACACTGGGCAGATCCAGGAGTCCATTGGGGAGGCAGTCAATGGCATTGTGAAGCACTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTGCAAGGACCTTAGACTaGAATGTTCGTCTCAATGGC +
Preference number: 5 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLARTLD*NVRLNG
Trigger: GCCATTGAGACGAACATTCAAGTCTAAGGTCCTTGC...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTAATAGAGGAAGCTCATaGGTACTTGGTCTCTGGCAG +
Preference number: 5 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLNRGSS*VLGLWQ
Trigger: CTGCCAGAGACCAAGTACCAATGAGCTTCCTCTATT...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGAACAGCCCCACACTTGTTGCAGGCTCAGTCTGGGAGGCCACAGGCTCCCAGCACTTTGAAATCTTTATaGCTACTGGGATCTTCACGA +
Preference number: 5 (lower is better)
Translates to: GTAPHLLQAQSGRPQAPSTLKSL*LLGSSR
Trigger: TCGTGAAGATCCCAGTAGCAATAAAGATTTCAAAGT...GCTGGGAGCCTGTGGCCTCCCAGACTGAGCCTGCAACAAGTGTGGGGCTGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GCAAGGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTACAAACTTCCAGTaGGTCTGGGCAATGACTGAT +
Preference number: 5 (lower is better)
Translates to: AREAPASKQAAPTLPLSVSTNFQ*VWAMTD
Trigger: ATCAGTCATTGCCCAGACCAACTGGAAGTTTGTAGA...GACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAATGTTCCGGGGCGTGTaGTTGACTGCAGTGACAAAG +
Preference number: 5 (lower is better)
Translates to: PLAHLCVARESQIARIMLMFRGV*LTAVTK
Trigger: CTTTGTCACTGCAGTCAACAACACGCCCCGGAACAT...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 90 bp CTTGTGATAATAAAGGCATGGAACTGTGGCTCCCTGGGATCAGCCTaGGTCTTGAATGCCAGCCCTTTGGGCATGCACAGCATTCCTACT +
Preference number: 5 (lower is better)
Translates to: LVIIKAWNCGSLGSA*VLNASPLGMHSIPT
Trigger: AGTAGGAATGCTGTGCATGCCCAAAGGGCTGGCATTCAAGACCCAGGCTGATCCCAGGGAGCCACAGTTCCATGCCTTTATTATCACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCATTGCACTGCAGATTaGCTTGCTGGTCACTTCTTC +
Preference number: 5 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLHCTAD*LAGHFF
Trigger: GAAGAAGTGACCAGCAAGCAAATCTGCAGTGCAATG...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGCACTGCTAAAAATCCCTTTGATTGGAGCATGGGATGTCCCACTCGCACACCTGGATCCTCTTCAGCTTaGAGGCGCTTTCGCTGCAAT +
Preference number: 5 (lower is better)
Translates to: GTAKNPFDWSMGCPTRTPGSSSA*RRFRCN
Trigger: ATTGCAGCGAAAGCGCCTCAAAGCTGAAGAGGATCC...AGGTGTGCGAGTGGGACATCCCATGCTCCAATCAAAGGGATTTTTAGCAGTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 90 bp AGAGGTTGGACAGTTTGGGCTGACGGATGGTACTGCCCATATTCCTaGCTTCCTGGATGTACTTCTCTCTCTGGTCATTGTCTAAGCGCA +
Preference number: 5 (lower is better)
Translates to: RGWTVWADGWYCPYS*LPGCTSLSGHCLSA
Trigger: TGCGCTTAGACAATGACCAGAGAGAGAAGTACATCCAGGAAGCCAGGAATATGGGCAGTACCATCCGTCAGCCCAAACTGTCCAACCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAAATAGAGGAAGCTCATaGGTACTTGGTCTCTGGCAG +
Preference number: 5 (lower is better)
Translates to: PLAHLCVARESQIARIMLNRGSS*VLGLWQ
Trigger: CTGCCAGAGACCAAGTACCAATGAGCTTCCTCTATT...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTACCTCTTGACCAAAGCTaGCAACCGAGCAATAGTTTC +
Preference number: 5 (lower is better)
Translates to: PLAHLCVARESQIARIMLPLDQS*QPSNSF
Trigger: GAAACTATTGCTCGGTTGCAAGCTTTGGTCAAGAGG...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCTGCTGGCCAGTATGGTCAATTTTaGCCAGACGTAGTTCAATTG +
Preference number: 5 (lower is better)
Translates to: LWDEEAELQGVFLGPAAGQYGQF*PDVVQL
Trigger: CAATTGAACTACGTCTGGCAAAAATTGACCATACTG...GCCAGCAGCAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp TTGTTGACTGCAGTGACAAAGCGGCAGAAATTGCGGGCCCGTGTGTaGCAGTTTTCTTCTGGAACTACGTCATTCTGCTCTAACGTCTCA +
Preference number: 5 (lower is better)
Translates to: LLTAVTKRQKLRARV*QFSSGTTSFCSNVS
Trigger: TGAGACGTTAGAGCAGAATGACGTAGTTCCAGAAGAAAACTGGCACACACGGGCCCGCAATTTCTGCCGCTTTGTCACTGCAGTCAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp TCAATGCCCTTAACGAGGGAAGTGTCCAGTGTGATGTTGAATTCTTaGAGGGTCTGCAGCACTCGGATCAAGGAATTGACGAGTGTGTGG +
Preference number: 5 (lower is better)
Translates to: SMPLTREVSSVMLNS*RVCSTRIKELTSVW
Trigger: CCACACACTCGTCAATTCCTTGATCCGAGTGCTGCAGACCCTGCAAGAATTCAACATCACACTGGACACTTCCCTCGTTAAGGGCATTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTCAGTATGGTCAATTTTaGCCAGACGTAGTTCAATTG +
Preference number: 5 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLQYGQF*PDVVQL
Trigger: CAATTGAACTACGTCTGGCAAAAATTGACCATACTG...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGTTTCCCACATCAGTCTaGATTTCCCCAATATTCTGG +
Preference number: 5 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLFPTSV*ISPIFW
Trigger: CCAGAATATTGGGGAAATCAAGACTGATGTGGGAAA...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GGGAGGCACCAGCTTCAAAACAAGCAGCGCCAACCTTGCCCCTCTCTGTCTCTTCAAATGAAGACATTTTaGAAGAGCCGGGGTGATTTA +
Preference number: 5 (lower is better)
Translates to: GRHQLQNKQRQPCPSLSLQMKTF*KSRGDL
Trigger: TAAATCACCCCGGCTCTTCAAAAATGTCTTCATTTG...AAGAGACAGAGAGGGGCAAGGTTGGCGCTGCTTGTTTTGAAGCTGGTGCCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp TTAGGTCCCTTTGGGATGAAGAGGCAGAGCTGCAGGGAGTCTTTCTGGGTCCTGCGTCTCATAATAGGTTaGTGCTTTCTCCAGGAAATC +
Preference number: 5 (lower is better)
Translates to: LGPFGMKRQSCRESFWVLRLIIG*CFLQEI
Trigger: GATTTCCTGGAGAAAGCACAAACCTATTATGAGACG...CAGGACCCAGAAAGACTCCCTGCAGCTCTGCCTCTTCATCCCAAAGGGACCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 90 bp CCATGGACAGTCGCACCCATGCTCTGGCTTTTCCCACATCAGTCTTaGTTTCCCCAATATTCTGGATGTGCCTCATATCCTGAATTAGGG +
Preference number: 5 (lower is better)
Translates to: PWTVAPMLWLFPHQS*FPQYSGCASYPELG
Trigger: CCCTAATTCAGGATATGAGGCACATCCAGAATATTGGGGAAATCAAGACTGATGTGGGAAAAGCCAGAGCATGGGTGCGACTGTCCATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp TTAACGAGGGAAGTGTCCAGTGTGATGTTGAATTCTTGCAGGGTCTaGAGCACTCGGATCAAGGAATTGACGAGTGTGTGGTCCTTGATC +
Preference number: 5 (lower is better)
Translates to: LTREVSSVMLNSCRV*STRIKELTSVWSLI
Trigger: GATCAAGGACCACACACTCGTCAATTCCTTGATCCGAGTGCTGCAGACCCTGCAAGAATTCAACATCACACTGGACACTTCCCTCGTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCACTCGCACACCTGTGCGTGGCCCGTGAAAGCCAGATAGCCAGAATAATGTTAAACTCAATGAAGTGGTaGTCAACATCCACAAAGCAG +
Preference number: 5 (lower is better)
Translates to: PLAHLCVARESQIARIMLNSMKW*STSTKQ
Trigger: CTGCTTTGTGGATGTTGACAACCACTTCATTGAGTT...TAACATTATTCTGGCTATCTGGCTTTCACGGGCCACGCACAGGTGTGCGAGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGCGCTTGTACAGCTTCTaGGTGAGCTCATGGTCTGAA +
Preference number: 5 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWRLYSF*VSSWSE
Trigger: TTCAGACCATGAGCTCACCAAGAAGCTGTACAAGCG...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATATGTTCCGGGGCGTGTaGTTGACTGCAGTGACAAAG +
Preference number: 5 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDMFRGV*LTAVTK
Trigger: CTTTGTCACTGCAGTCAACAACACGCCCCGGAACAT...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 90 bp GGATGTGCCTCATATCCTGAATTAGGGAAATCCTCAGGGGAGACATaGCGGCACTGGCATCAGACTTTCTCCGTTCTGAATCAAGAAGTA +
Preference number: 5 (lower is better)
Translates to: GCASYPELGKSSGET*RHWHQTFSVLNQEV
Trigger: TACTTCTTGATTCAGAACGGAGAAAGTCTGATGCCAGTGCCGTCATGTCTCCCCTGAGGATTTCCCTAATTCAGGATATGAGGCACATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 90 bp TTTGTCCACTTGTTGCTGGCTGGCCCGGTGCAAAGCACATCAGACTaGAGCTTAGGGAAAAAGCCAGGTTCATATTTTCCTTGTCCAATT +
Preference number: 5 (lower is better)
Translates to: FVHLLLAGPVQSTSD*SLGKKPGSYFPCPI
Trigger: AATTGGACAAGGAAAATATGAACCTGGCTTTTTCCCTAAGCTGCAGTCTGATGTGCTTTGCACCGGGCCAGCCAGCAACAAGTGGACAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GAGCTGACTTGGCAGTGCTTGATCAGAGGCACTGCTAAAAATCCCTTTGATTGGCAGTTTGTTGGGAAATaGAGGCAAGTCCTCTGGCAA +
Preference number: 5 (lower is better)
Translates to: ELTWQCLIRGTAKNPFDWQFVGK*RQVLWQ
Trigger: TTGCCAGAGGACTTGCCTCAATTTCCCAACAAACTG...CCAATCAAAGGGATTTTTAGCAGTGCCTCTGATCAAGCACTGCCAAGTCAGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATTGTGATGTTGAATTCTaGCAGGGTCTGCAGCACTCG +
Preference number: 5 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDCDVEF*QGLQHS
Trigger: CGAGTGCTGCAGACCCTGCAAGAATTCAACATCACA...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACAGTCTCTGGCAGATTATaGGCCCATAGACCCCAGAAA +
Preference number: 5 (lower is better)
Translates to: PVKHAHVYSCATLCQQETVSGRL*AHRPQK
Trigger: TTTCTGGGGTCTATGGGCCAATAATCTGCCAGAGAC...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATTCTACAAACTTCCAGTaGGTCTGGGCAATGACTGAT +
Preference number: 5 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDSTNFQ*VWAMTD
Trigger: ATCAGTCATTGCCCAGACCAACTGGAAGTTTGTAGA...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 90 bp CAAATGAAGACATTTTTGAAGAGCCGGGGTGATTTAAATCCATGCTaGAAAGCTTGTTCCAGTGCTGAAACGAGACCACACTCTCCACAG +
Preference number: 5 (lower is better)
Translates to: QMKTFLKSRGDLNPC*KACSSAETRPHSPQ
Trigger: CTGTGGAGAGTGTGGTCTCGTTTCAGCACTGGAACAAGCTTTTCAGCATGGATTTAAATCACCCCGGCTCTTCAAAAATGTCTTCATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACACAGTTTGTTGGGAAATaGAGGCAAGTCCTCTGGCAA +
Preference number: 5 (lower is better)
Translates to: PVKHAHVYSCATLCQQETQFVGK*RQVLWQ
Trigger: TTGCCAGAGGACTTGCCTCAATTTCCCAACAAACTG...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACAATGTTCCCGTTCCTCTaGTCAGACACAAGCTCAGAA +
Preference number: 5 (lower is better)
Translates to: PVKHAHVYSCATLCQQETMFPFL*SDTSSE
Trigger: TTCTGAGCTTGTGTCTGACAAGAGGAACGGGAACAT...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACACCTCTTGACCAAAGCTaGCAACCGAGCAATAGTTTC +
Preference number: 5 (lower is better)
Translates to: PVKHAHVYSCATLCQQETPLDQS*QPSNSF
Trigger: GAAACTATTGCTCGGTTGCAAGCTTTGGTCAAGAGG...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATCCAGACGTAGTTCAATaGCTTTTTCTGCTTCATCCA +
Preference number: 5 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDPDVVQ*LFLLHP
Trigger: TGGATGAAGCAGAAAAAGCAATTGAACTACGTCTGG...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTCTTTTTGTCCACTTGTaGCTGGCTGGCCCGGTGCAA +
Preference number: 5 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCLFVHL*LAGPVQ
Trigger: TTGCACCGGGCCAGCCAGCAACAAGTGGACAAAAAG...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACACATTCCACAAGCCACTaGGCATACAGCCCAGAATTA +
Preference number: 5 (lower is better)
Translates to: PVKHAHVYSCATLCQQETHSTSH*AYSPEL
Trigger: TAATTCTGGGCTGTATGCCAAGTGGCTTGTGGAATG...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GTAAGTATACATATCCTCTCTGTCCCCCACAACTTGCTTAGGTCCCTTTGGGATCGTCTCATAATAGGTTaGTGCTTTCTCCAGGAAATC +
Preference number: 5 (lower is better)
Translates to: VSIHILSVPHNLLRSLWDRLIIG*CFLQEI
Trigger: GATTTCCTGGAGAAAGCACAAACCTATTATGAGACG...ATCCCAAAGGGACCTAAGCAAGTTGTGGGGGACAGAGAGGATATGTATACTTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp CCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCCAACAGGAAACATTTCCCACATCAGTCTaGATTTCCCCAATATTCTGG +
Preference number: 5 (lower is better)
Translates to: PVKHAHVYSCATLCQQETFPTSV*ISPIFW
Trigger: CCAGAATATTGGGGAAATCAAGACTGATGTGGGAAA...TGTTTCCTGTTGGCACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTCGCTTGTACAGCTTCTaGGTGAGCTCATGGTCTGAA +
Preference number: 5 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCRLYSF*VSSWSE
Trigger: TTCAGACCATGAGCTCACCAAGAAGCTGTACAAGCG...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 90 bp CGTAGTTCAATTGCTTTTTCTGCTTCATCCACAGTGGTACACTTCTaGTACATAGATGTCCTAAGAGTAGGTGTTCGAACATTCAACAGT +
Preference number: 5 (lower is better)
Translates to: RSSIAFSASSTVVHF*YIDVLRVGVRTFNS
Trigger: ACTGTTGAATGTTCGAACACCTACTCTTAGGACATCTATGTACCAGAAGTGTACCACTGTGGATGAAGCAGAAAAAGCAATTGAACTACG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS-3UTR CAA 90 bp GAAGAAAAGACAAACCTGTTAAACATGCTCATGTTTACTCCTGTGCAACTTTGTGCAAGGACCTTAGACTaGAATGTTCGTCTCAATGGC +
Preference number: 5 (lower is better)
Translates to: EEKTNLLNMLMFTPVQLCARTLD*NVRLNG
Trigger: GCCATTGAGACGAACATTCAAGTCTAAGGTCCTTGC...ACAAAGTTGCACAGGAGTAAACATGAGCATGTTTAACAGGTTTGTCTTTTCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 72 bp TGCGACAAGGCCTCTCATCCACCTCAGGTAGGGAAGTaGGCAGCTCCCCAACAAGCACGCGCTCCAAGCTTC +
Preference number: 6 (lower is better)
Translates to: CDKASHPPQVGK*AAPQQARAPSF
Trigger: GAAGCTTGGAGCGCGTGCTTGTTGGGGAGCTGCTCACTTCCCTACCTGAGGTGGATGAGAGGCCTTGTCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp GAGATGGTCACAAGTCTCCGGATGACACTGGGGGACTaGTGTAGTGGCGGAGTGCGACAAGGCCTCTCATCC +
Preference number: 6 (lower is better)
Translates to: EMVTSLRMTLGD*CSGGVRQGLSS
Trigger: GGATGAGAGGCCTTGTCGCACTCCGCCACTACAGCAGTCCCCCAGTGTCATCCGGAGACTTGTGACCATCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp GTGTGGTCCTTGATCAGCGCCACGTCCTCATACATGTaGGCAGTGATGGGGCAGTCGGCCAGCAAGGCTATC +
Preference number: 6 (lower is better)
Translates to: VWSLISATSSYM*AVMGQSASKAI
Trigger: GATAGCCTTGCTGGCCGACTGCCCCATCACTGCGCACATGTATGAGGACGTGGCGCTGATCAAGGACCACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 72 bp AGAGGCTGGCAATCAAAGTGTTCTCTTCCACACCGGTaGTGTTCACCTCCCCATGCCCCAGCTCCACGGCCT +
Preference number: 6 (lower is better)
Translates to: RGWQSKCSLPHR*CSPPHAPAPRP
Trigger: AGGCCGTGGAGCTGGGGCATGGGGAGGTGAACATCACCGGTGTGGAAGAGAACACTTTGATTGCCAGCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 72 bp GCTTATTGTTGGGCGAGATGGTCACAAGTCTCCGGATaGCACTGGGGGACTGCTGTAGTGGCGGAGTGCGAC +
Preference number: 6 (lower is better)
Translates to: AYCWARWSQVSG*HWGTAVVAECD
Trigger: GTCGCACTCCGCCACTACAGCAGTCCCCCAGTGTCATCCGGAGACTTGTGACCATCTCGCCCAACAATAAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp CGGATCCTCTTCAGCTTTGAGGCGCTTTCGCTGCAATaGAGGTTCCCTTCAGGGGGAACGCCAAAGGCCATG +
Preference number: 6 (lower is better)
Translates to: RILFSFEALSLQ*RFPSGGTPKAM
Trigger: CATGGCCTTTGGCGTTCCCCCTGAAGGGAACCTCCATTGCAGCGAAAGCGCCTCAAAGCTGAAGAGGATCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 90 bp AGGGTCTGCAGCACTCGGATCAAGGAATTGACGAGTGTGTGGTCCTaGATCAGCGCCACGTCCTCATACATGTGCGCAGTGATGGGGCAG +
Preference number: 6 (lower is better)
Translates to: RVCSTRIKELTSVWS*ISATSSYMCAVMGQ
Trigger: CTGCCCCATCACTGCGCACATGTATGAGGACGTGGCGCTGATCAAGGACCACACACTCGTCAATTCCTTGATCCGAGTGCTGCAGACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp AAGCTCGGATCCTCTTCAGCTTTGAGGCGCTTTCGCTaGAATGGAGGTTCCCTTCAGGGGGAACGCCAAAGG +
Preference number: 6 (lower is better)
Translates to: KLGSSSALRRFR*NGGSLQGERQR
Trigger: CCTTTGGCGTTCCCCCTGAAGGGAACCTCCATTGCAGCGAAAGCGCCTCAAAGCTGAAGAGGATCCGAGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp TGTGTGCTGCTTCTGCCGGTCTTTCCGCCTCCACTGTaGAGGGGCATTCCTTTTTGTCCACTTGTTGCTGGC +
Preference number: 6 (lower is better)
Translates to: CVLLLPVFPPPL*RGIPFCPLVAG
Trigger: GCCAGCAACAAGTGGACAAAAAGGAATGCCCCTGCACAGTGGAGGCGGAAAGACCGGCAGAAGCAGCACACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp CTCTGGTCATTGTCTAAGCGCAAGTGTTCTGTGTGCTaGTTCTGCCGGTCTTTCCGCCTCCACTGTGCAGGG +
Preference number: 6 (lower is better)
Translates to: LWSLSKRKCSVC*FCRSFRLHCAG
Trigger: CCCTGCACAGTGGAGGCGGAAAGACCGGCAGAAGCAGCACACAGAACACTTGCGCTTAGACAATGACCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp GAGGCAGCTCCAACTTGGAGCGGTCATCCAGGCCGTTaGAATGCAAGCCCATCAGGTATGGTACAGGAGCAT +
Preference number: 6 (lower is better)
Translates to: EAAPTWSGHPGR*NASPSGMVQEH
Trigger: ATGCTCCTGTACCATACCTGATGGGCTTGCATTCCAACGGCCTGGATGACCGCTCCAAGTTGGAGCTGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 90 bp TCCTCTTGTCAGACACAAGCTCAGAAGCTCGGATCCTCTTCAGCTTaGAGGCGCTTTCGCTGCAATGGAGGTTCCCTTCAGGGGGAACGC +
Preference number: 6 (lower is better)
Translates to: SSCQTQAQKLGSSSA*RRFRCNGGSLQGER
Trigger: GCGTTCCCCCTGAAGGGAACCTCCATTGCAGCGAAAGCGCCTCAAAGCTGAAGAGGATCCGAGCTTCTGAGCTTGTGTCTGACAAGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp GCAGCTTGGTCCCAGGAATGCCTTCACCATCTTCCATaGCACTCTGGTCTCCACCATCAGCAAGTGGAGCAT +
Preference number: 6 (lower is better)
Translates to: AAWSQECLHHLP*HSGLHHQQVEH
Trigger: ATGCTCCACTTGCTGATGGTGGAGACCAGAGTGGCATGGAAGATGGTGAAGGCATTCCTGGGACCAAGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp TCATTGTCTAAGCGCAAGTGTTCTGTGTGCTGCTTCTaGCGGTCTTTCCGCCTCCACTGTGCAGGGGCATTC +
Preference number: 6 (lower is better)
Translates to: SLSKRKCSVCCF*RSFRLHCAGAF
Trigger: GAATGCCCCTGCACAGTGGAGGCGGAAAGACCGGCAGAAGCAGCACACAGAACACTTGCGCTTAGACAATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp ATGCCATTGACTGCCTCCCCAATGGACTCCTGGATCTaGCCAGTGTTCAGCTTGGGCTTATTGTTGGGCGAG +
Preference number: 6 (lower is better)
Translates to: MPLTASPMDSWI*PVFSLGLLLGE
Trigger: CTCGCCCAACAATAAGCCCAAGCTGAACACTGGGCAGATCCAGGAGTCCATTGGGGAGGCAGTCAATGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp TGCAGGGGCATTCCTTTTTGTCCACTTGTTGCTGGCTaGCCCGGTGCAAAGCACATCAGACTGCAGCTTAGG +
Preference number: 6 (lower is better)
Translates to: CRGIPFCPLVAG*PGAKHIRLQLR
Trigger: CCTAAGCTGCAGTCTGATGTGCTTTGCACCGGGCCAGCCAGCAACAAGTGGACAAAAAGGAATGCCCCTGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp GGTTCTGGCACTCAAACGTCATCTCTAGCACATTCCTaGGGATCTGCAGGATCTGGGTCTCACCCAGCTCTC +
Preference number: 6 (lower is better)
Translates to: GSGTQTSSLAHS*GSAGSGSHPAL
Trigger: GAGAGCTGGGTGAGACCCAGATCCTGCAGATCCCCAGGAATGTGCTAGAGATGACGTTTGAGTGCCAGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp CCCCAATGGACTCCTGGATCTGCCCAGTGTTCAGCTTaGGCTTATTGTTGGGCGAGATGGTCACAAGTCTCC +
Preference number: 6 (lower is better)
Translates to: PQWTPGSAQCSA*AYCWARWSQVS
Trigger: GGAGACTTGTGACCATCTCGCCCAACAATAAGCCCAAGCTGAACACTGGGCAGATCCAGGAGTCCATTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp GAGTGCAAAGGGGAGCCCGCAATGTTCCCGTTCCTCTaGTCAGACACAAGCTCAGAAGCTCGGATCCTCTTC +
Preference number: 6 (lower is better)
Translates to: ECKGEPAMFPFL*SDTSSEARILF
Trigger: GAAGAGGATCCGAGCTTCTGAGCTTGTGTCTGACAAGAGGAACGGGAACATTGCGGGCTCCCCTTTGCACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp AATTTGCCGTCCTTGCCAATGTTCCGGGGCGTGTTGTaGACTGCAGTGACAAAGCGGCAGAAATTGCGGGCC +
Preference number: 6 (lower is better)
Translates to: NLPSLPMFRGVL*TAVTKRQKLRA
Trigger: GGCCCGCAATTTCTGCCGCTTTGTCACTGCAGTCAACAACACGCCCCGGAACATTGGCAAGGACGGCAAATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 72 bp AATGGAGGTTCCCTTCAGGGGGAACGCCAAAGGCCATaGGGATCTCAGAGACCTCCTGGACAAACTCCAGTT +
Preference number: 6 (lower is better)
Translates to: NGGSLQGERQRP*GSQRPPGQTPV
Trigger: AACTGGAGTTTGTCCAGGAGGTCTCTGAGATCCTCATGGCCTTTGGCGTTCCCCCTGAAGGGAACCTCCATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 72 bp AGACACAAGCTCAGAAGCTCGGATCCTCTTCAGCTTTaGGGCGCTTTCGCTGCAATGGAGGTTCCCTTCAGG +
Preference number: 6 (lower is better)
Translates to: RHKLRSSDPLQL*GAFAAMEVPFR
Trigger: CCTGAAGGGAACCTCCATTGCAGCGAAAGCGCCTCAAAGCTGAAGAGGATCCGAGCTTCTGAGCTTGTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp AGCTCCAACTTGGAGCGGTCATCCAGGCCGTTGGAATaGAAGCCCATCAGGTATGGTACAGGAGCATCTAAG +
Preference number: 6 (lower is better)
Translates to: SSNLERSSRPLE*KPIRYGTGASK
Trigger: CTTAGATGCTCCTGTACCATACCTGATGGGCTTGCATTCCAACGGCCTGGATGACCGCTCCAAGTTGGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp TCTCTCTGGTCATTGTCTAAGCGCAAGTGTTCTGTGTaGTGCTTCTGCCGGTCTTTCCGCCTCCACTGTGCA +
Preference number: 6 (lower is better)
Translates to: SLWSLSKRKCSV*CFCRSFRLHCA
Trigger: TGCACAGTGGAGGCGGAAAGACCGGCAGAAGCAGCACACAGAACACTTGCGCTTAGACAATGACCAGAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp GTCTGCAGCACTCGGATCAAGGAATTGACGAGTGTGTaGTCCTTGATCAGCGCCACGTCCTCATACATGTGC +
Preference number: 6 (lower is better)
Translates to: VCSTRIKELTSV*SLISATSSYMC
Trigger: GCACATGTATGAGGACGTGGCGCTGATCAAGGACCACACACTCGTCAATTCCTTGATCCGAGTGCTGCAGAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp CAGACACAAGCTCAGAAGCTCGGATCCTCTTCAGCTTaGAGGCGCTTTCGCTGCAATGGAGGTTCCCTTCAG +
Preference number: 6 (lower is better)
Translates to: QTQAQKLGSSSA*RRFRCNGGSLQ
Trigger: CTGAAGGGAACCTCCATTGCAGCGAAAGCGCCTCAAAGCTGAAGAGGATCCGAGCTTCTGAGCTTGTGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp TCCCCAATGGACTCCTGGATCTGCCCAGTGTTCAGCTaGGGCTTATTGTTGGGCGAGATGGTCACAAGTCTC +
Preference number: 6 (lower is better)
Translates to: SPMDSWICPVFS*GLLLGEMVTSL
Trigger: GAGACTTGTGACCATCTCGCCCAACAATAAGCCCAAGCTGAACACTGGGCAGATCCAGGAGTCCATTGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp GGCGTGTTGTTGACTGCAGTGACAAAGCGGCAGAAATaGCGGGCCCGTGTGTGCCAGTTTTCTTCTGGAACT +
Preference number: 6 (lower is better)
Translates to: GVLLTAVTKRQK*RARVCQFSSGT
Trigger: AGTTCCAGAAGAAAACTGGCACACACGGGCCCGCAATTTCTGCCGCTTTGTCACTGCAGTCAACAACACGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp AGCACTCGGATCAAGGAATTGACGAGTGTGTGGTCCTaGATCAGCGCCACGTCCTCATACATGTGCGCAGTG +
Preference number: 6 (lower is better)
Translates to: STRIKELTSVWS*ISATSSYMCAV
Trigger: CACTGCGCACATGTATGAGGACGTGGCGCTGATCAAGGACCACACACTCGTCAATTCCTTGATCCGAGTGCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp AATTCTTGCAGGGTCTGCAGCACTCGGATCAAGGAATaGACGAGTGTGTGGTCCTTGATCAGCGCCACGTCC +
Preference number: 6 (lower is better)
Translates to: NSCRVCSTRIKE*TSVWSLISATS
Trigger: GGACGTGGCGCTGATCAAGGACCACACACTCGTCAATTCCTTGATCCGAGTGCTGCAGACCCTGCAAGAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 90 bp ATAATAAAGGCATGGAACTGTGGCTCCCTGGGATCAGCCTGGGTCTaGAATGCCAGCCCTTTGGGCATGCACAGCATTCCTACTGCATCC +
Preference number: 6 (lower is better)
Translates to: IIKAWNCGSLGSAWV*NASPLGMHSIPTAS
Trigger: GGATGCAGTAGGAATGCTGTGCATGCCCAAAGGGCTGGCATTCAAGACCCAGGCTGATCCCAGGGAGCCACAGTTCCATGCCTTTATTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 90 bp ATGTTCCGGGGCGTGTTGTTGACTGCAGTGACAAAGCGGCAGAAATaGCGGGCCCGTGTGTGCCAGTTTTCTTCTGGAACTACGTCATTC +
Preference number: 6 (lower is better)
Translates to: MFRGVLLTAVTKRQK*RARVCQFSSGTTSF
Trigger: GAATGACGTAGTTCCAGAAGAAAACTGGCACACACGGGCCCGCAATTTCTGCCGCTTTGTCACTGCAGTCAACAACACGCCCCGGAACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp GCAGTGACAAAGCGGCAGAAATTGCGGGCCCGTGTGTaGCAGTTTTCTTCTGGAACTACGTCATTCTGCTCT +
Preference number: 6 (lower is better)
Translates to: AVTKRQKLRARV*QFSSGTTSFCS
Trigger: AGAGCAGAATGACGTAGTTCCAGAAGAAAACTGGCACACACGGGCCCGCAATTTCTGCCGCTTTGTCACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp ACCATCCTCCCTTGTGATAATAAAGGCATGGAACTGTaGCTCCCTGGGATCAGCCTGGGTCTTGAATGCCAG +
Preference number: 6 (lower is better)
Translates to: TILPCDNKGMEL*LPGISLGLECQ
Trigger: CTGGCATTCAAGACCCAGGCTGATCCCAGGGAGCCACAGTTCCATGCCTTTATTATCACAAGGGAGGATGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp TCCACAAGCCACTTGGCATACAGCCCAGAATTATCATaGCCAATCTGGACAGTGGTGAGCTTCCCCAGGTTC +
Preference number: 6 (lower is better)
Translates to: STSHLAYSPELS*PIWTVVSFPRF
Trigger: GAACCTGGGGAAGCTCACCACTGTCCAGATTGGCCATGATAATTCTGGGCTGTATGCCAAGTGGCTTGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp CACGGGTTGGCGGTGAACATGGAGCCGCCCAGCTTCTaGCTTGGTACAATCAAAATGTGGTATGGAATCAGG +
Preference number: 6 (lower is better)
Translates to: HGLAVNMEPPSF*LGTIKMWYGIR
Trigger: CCTGATTCCATACCACATTTTGATTGTACCAAGCAAGAAGCTGGGCGGCTCCATGTTCACCGCCAACCCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 90 bp GTGATGTTGAATTCTTGCAGGGTCTGCAGCACTCGGATCAAGGAATaGACGAGTGTGTGGTCCTTGATCAGCGCCACGTCCTCATACATG +
Preference number: 6 (lower is better)
Translates to: VMLNSCRVCSTRIKE*TSVWSLISATSSYM
Trigger: CATGTATGAGGACGTGGCGCTGATCAAGGACCACACACTCGTCAATTCCTTGATCCGAGTGCTGCAGACCCTGCAAGAATTCAACATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp GCTGCTTCAGGTGTCTGGACAGTAATTTCTTCTCCATaGACAGTCGCACCCATGCTCTGGCTTTTCCCACAT +
Preference number: 6 (lower is better)
Translates to: AASGVWTVISSP*TVAPMLWLFPH
Trigger: ATGTGGGAAAAGCCAGAGCATGGGTGCGACTGTCCATGGAGAAGAAATTACTGTCCAGACACCTGAAGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp TTCACAATGCCATTGACTGCCTCCCCAATGGACTCCTaGATCTGCCCAGTGTTCAGCTTGGGCTTATTGTTG +
Preference number: 6 (lower is better)
Translates to: FTMPLTASPMDS*ICPVFSLGLLL
Trigger: CAACAATAAGCCCAAGCTGAACACTGGGCAGATCCAGGAGTCCATTGGGGAGGCAGTCAATGGCATTGTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp AACAGTGTCAGGCTGCCACGCTCTTTCTCAGGTTTATaGAAGTGCTTCACAATGCCATTGACTGCCTCCCCA +
Preference number: 6 (lower is better)
Translates to: NSVRLPRSFSGL*KCFTMPLTASP
Trigger: TGGGGAGGCAGTCAATGGCATTGTGAAGCACTTCCATAAACCTGAGAAAGAGCGTGGCAGCCTGACACTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 90 bp GTCAATGCCCTTAACGAGGGAAGTGTCCAGTGTGATGTTGAATTCTaGCAGGGTCTGCAGCACTCGGATCAAGGAATTGACGAGTGTGTG +
Preference number: 6 (lower is better)
Translates to: VNALNEGSVQCDVEF*QGLQHSDQGIDECV
Trigger: CACACACTCGTCAATTCCTTGATCCGAGTGCTGCAGACCCTGCAAGAATTCAACATCACACTGGACACTTCCCTCGTTAAGGGCATTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp GAAGTGTCCAGTGTGATGTTGAATTCTTGCAGGGTCTaGAGCACTCGGATCAAGGAATTGACGAGTGTGTGG +
Preference number: 6 (lower is better)
Translates to: EVSSVMLNSCRV*STRIKELTSVW
Trigger: CCACACACTCGTCAATTCCTTGATCCGAGTGCTGCAGACCCTGCAAGAATTCAACATCACACTGGACACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 72 bp GTCGCACCCATGCTCTGGCTTTTCCCACATCAGTCTTaGTTTCCCCAATATTCTGGATGTGCCTCATATCCT +
Preference number: 6 (lower is better)
Translates to: VAPMLWLFPHQS*FPQYSGCASYP
Trigger: AGGATATGAGGCACATCCAGAATATTGGGGAAATCAAGACTGATGTGGGAAAAGCCAGAGCATGGGTGCGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS GCA 72 bp TTAACGAGGGAAGTGTCCAGTGTGATGTTGAATTCTTaGAGGGTCTGCAGCACTCGGATCAAGGAATTGACG +
Preference number: 6 (lower is better)
Translates to: LTREVSSVMLNS*RVCSTRIKELT
Trigger: CGTCAATTCCTTGATCCGAGTGCTGCAGACCCTGCAAGAATTCAACATCACACTGGACACTTCCCTCGTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp CTAAGAGTAGGTGTTCGAACATTCAACAGTCTGATCTaGTCTACCCTTGAGTCAAAGACCCGGAGGACAGGG +
Preference number: 6 (lower is better)
Translates to: LRVGVRTFNSLI*STLESKTRRTG
Trigger: CCCTGTCCTCCGGGTCTTTGACTCAAGGGTAGACAAGATCAGACTGTTGAATGTTCGAACACCTACTCTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp AGTCGCACCCATGCTCTGGCTTTTCCCACATCAGTCTaGATTTCCCCAATATTCTGGATGTGCCTCATATCC +
Preference number: 6 (lower is better)
Translates to: SRTHALAFPTSV*ISPIFWMCLIS
Trigger: GGATATGAGGCACATCCAGAATATTGGGGAAATCAAGACTGATGTGGGAAAAGCCAGAGCATGGGTGCGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp ACCTCATTCCTGACCATCACACATTCCACAAGCCACTaGGCATACAGCCCAGAATTATCATGGCCAATCTGG +
Preference number: 6 (lower is better)
Translates to: TSFLTITHSTSH*AYSPELSWPIW
Trigger: CCAGATTGGCCATGATAATTCTGGGCTGTATGCCAAGTGGCTTGTGGAATGTGTGATGGTCAGGAATGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp CTTAACGAGGGAAGTGTCCAGTGTGATGTTGAATTCTaGCAGGGTCTGCAGCACTCGGATCAAGGAATTGAC +
Preference number: 6 (lower is better)
Translates to: LNEGSVQCDVEF*QGLQHSDQGID
Trigger: GTCAATTCCTTGATCCGAGTGCTGCAGACCCTGCAAGAATTCAACATCACACTGGACACTTCCCTCGTTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS TCA 72 bp TCATATCCTGAATTAGGGAAATCCTCAGGGGAGACATaGCGGCACTGGCATCAGACTTTCTCCGTTCTGAAT +
Preference number: 6 (lower is better)
Translates to: SYPELGKSSGET*RHWHQTFSVLN
Trigger: ATTCAGAACGGAGAAAGTCTGATGCCAGTGCCGTCATGTCTCCCCTGAGGATTTCCCTAATTCAGGATATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 90 bp ATAGATGTCCTAAGAGTAGGTGTTCGAACATTCAACAGTCTGATCTaGTCTACCCTTGAGTCAAAGACCCGGAGGACAGGGTCTTTATCA +
Preference number: 6 (lower is better)
Translates to: IDVLRVGVRTFNSLI*STLESKTRRTGSLS
Trigger: TGATAAAGACCCTGTCCTCCGGGTCTTTGACTCAAGGGTAGACAAGATCAGACTGTTGAATGTTCGAACACCTACTCTTAGGACATCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp TCTACATTCTCAGGGTATCGGGCAAGGACCTTAGACTaGAATGTTCGTCTCAATGGCGTCTGCTCAAAATTT +
Preference number: 6 (lower is better)
Translates to: STFSGYRARTLD*NVRLNGVCSKF
Trigger: AAATTTTGAGCAGACGCCATTGAGACGAACATTCAAGTCTAAGGTCCTTGCCCGATACCCTGAGAATGTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CAA 72 bp CGAACTTCCAGTTTTTCCAAACTCACTCCAGTCCTCTaGACCAAAGCTTGCAACCGAGCAATAGTTTCATTT +
Preference number: 6 (lower is better)
Translates to: RTSSFSKLTPVL*TKACNRAIVSF
Trigger: AAATGAAACTATTGCTCGGTTGCAAGCTTTGGTCAAGAGGACTGGAGTGAGTTTGGAAAAACTGGAAGTTCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2
CDS CCA 72 bp ATTGCTTTTTCTGCTTCATCCACAGTGGTACACTTCTaGTACATAGATGTCCTAAGAGTAGGTGTTCGAACA +
Preference number: 6 (lower is better)
Translates to: IAFSASSTVVHF*YIDVLRVGVRT
Trigger: TGTTCGAACACCTACTCTTAGGACATCTATGTACCAGAAGTGTACCACTGTGGATGAAGCAGAAAAAGCAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080437.13
ENSMUST00000106722.2