RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DENND1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035392

Ensembl transcript IDs: ENSMUST00000102787.10, ENSMUST00000136460.2, ENSMUST00000140552.8, ENSMUST00000142813.2, ENSMUST00000143095.8, ENSMUST00000150896.8

Found 277 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACCCACACAGGGTGCCAAGGGTGGCGGCAGGCAGCTCTTCTGGGATaGCCATTCCCAGGGCCAGGCCTCAGAGATGGGCTGTGGAGGAGG +
Preference number: 1 (lower is better)
Translates to: THTGCQGWRQAALLG*PFPGPGLRDGLWRR
Trigger: CCTCCTCCACAGCCCATCTCTGAGGCCTGGCCCTGGGAATGGCCATCCCAGAAGAGCTGCCTGCCGCCACCCTTGGCACCCTGTGTGGGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CCA 90 bp CAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCTaGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGGCCACGTGTA +
Preference number: 1 (lower is better)
Translates to: QEFLRCREAGESGEG*LPGPHLPHAQRPRV
Trigger: TACACGTGGCCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CCA 90 bp GACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTaGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAG +
Preference number: 1 (lower is better)
Translates to: DLGSGISALSRSWRE*GGLASRPPLAARSE
Trigger: CTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR TCA 90 bp TGCCCAGCTCTGCCCATAAAGCTCCAAGTGGCAGGAGGCTGGGCCTaGGCTTTGACTGACACGAGAGCCCAGAGGTATGAGGGTGGCAGA +
Preference number: 1 (lower is better)
Translates to: CPALPIKLQVAGGWA*ALTDTRAQRYEGGR
Trigger: TCTGCCACCCTCATACCTCTGGGCTCTCGTGTCAGTCAAAGCTCAGGCCCAGCCTCCTGCCACTTGGAGCTTTATGGGCAGAGCTGGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CCA 90 bp AACTTTGGTGACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTaGAGAGAGTGGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCA +
Preference number: 1 (lower is better)
Translates to: NFGDLGSGISALSRS*REWGGLASRPPLAA
Trigger: TGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGTCACCAAAGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR GCA 90 bp CTGTGGCAGGAAGCTTGTCCTTTGAGTTGGAATCTGGGTCACTGCTaGCCAGCTCTGCCCATAAAGCTCCAAGTGGCAGGAGGCTGGGCC +
Preference number: 1 (lower is better)
Translates to: LWQEACPLSWNLGHC*PALPIKLQVAGGWA
Trigger: GGCCCAGCCTCCTGCCACTTGGAGCTTTATGGGCAGAGCTGGGCAGCAGTGACCCAGATTCCAACTCAAAGGACAAGCTTCCTGCCACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CCA 90 bp GGGGTCCTGGGTCTCTGCCTGTGGGGATGGCATGGTCTTTGGCAGTaGATCTTCTGCAGAGGACACACAGCCGTTCTCCGTGATGTCCTT +
Preference number: 1 (lower is better)
Translates to: GVLGLCLWGWHGLWQ*IFCRGHTAVLRDVL
Trigger: AAGGACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAAGACCATGCCATCCCCACAGGCAGAGACCCAGGACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR GCA 90 bp TGTCTGTGGCAGGAAGCTTGTCCTTTGAGTTGGAATCTGGGTCACTaGTGCCCAGCTCTGCCCATAAAGCTCCAAGTGGCAGGAGGCTGG +
Preference number: 1 (lower is better)
Translates to: CLWQEACPLSWNLGH*CPALPIKLQVAGGW
Trigger: CCAGCCTCCTGCCACTTGGAGCTTTATGGGCAGAGCTGGGCAGCAGTGACCCAGATTCCAACTCAAAGGACAAGCTTCCTGCCACAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR GCA 90 bp TGTGATTGGTCTCCGGTCTTCTCGAAGTCTGGGGTCCTGGGTCTCTaGCTGTGGGGATGGCATGGTCTTTGGCAGTGGATCTTCTGCAGA +
Preference number: 1 (lower is better)
Translates to: CDWSPVFSKSGVLGL*LWGWHGLWQWIFCR
Trigger: TCTGCAGAAGATCCACTGCCAAAGACCATGCCATCCCCACAGGCAGAGACCCAGGACCCCAGACTTCGAGAAGACCGGAGACCAATCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CCA 90 bp CCTGACCCAGGAGCTCTAACAGCTGTGCCTCCCTCCCTTTGTCTGTaGCAGGAAGCTTGTCCTTTGAGTTGGAATCTGGGTCACTGCTGC +
Preference number: 1 (lower is better)
Translates to: PDPGALTAVPPSLCL*QEACPLSWNLGHCC
Trigger: GCAGCAGTGACCCAGATTCCAACTCAAAGGACAAGCTTCCTGCCACAGACAAAGGGAGGGAGGCACAGCTGTTAGAGCTCCTGGGTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CCA 90 bp AAGTGGACTGTGATTGGTCTCCGGTCTTCTCGAAGTCTGGGGTCCTaGGTCTCTGCCTGTGGGGATGGCATGGTCTTTGGCAGTGGATCT +
Preference number: 1 (lower is better)
Translates to: KWTVIGLRSSRSLGS*VSACGDGMVFGSGS
Trigger: AGATCCACTGCCAAAGACCATGCCATCCCCACAGGCAGAGACCCAGGACCCCAGACTTCGAGAAGACCGGAGACCAATCACAGTCCACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR TCA 90 bp AGCTGGCTGGGGCTGGGTTTGCTGACCATTAGGTCTCCAGACCCCTaGCCCTTCAGGAACAACTCCAGTTGGTGGTTAGGTGAAGACTCA +
Preference number: 1 (lower is better)
Translates to: SWLGLGLLTIRSPDP*PFRNNSSWWLGEDS
Trigger: TGAGTCTTCACCTAACCACCAACTGGAGTTGTTCCTGAAGGGTCAGGGGTCTGGAGACCTAATGGTCAGCAAACCCAGCCCCAGCCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR TCA 90 bp AGGGATGTACACATGCTGCCAGTACATAGGGTAGAGCATGGCAGCTaGGCCGTGGATGCAGGCCGTCAATGTACTGAGCTTGCTGCAGAT +
Preference number: 1 (lower is better)
Translates to: RDVHMLPVHRVEHGS*AVDAGRQCTELAAD
Trigger: ATCTGCAGCAAGCTCAGTACATTGACGGCCTGCATCCACGGCTCAGCTGCCATGCTCTACCCTATGTACTGGCAGCATGTGTACATCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000150896.8
3UTR GCA 90 bp GGTCTCTGCCTGTGGGGATGGCATGGTCTTTGGCAGTGGATCTTCTaGAGAGGACACACAGCCGTTCTCCGTGATGTCCTTTTGCTTCAA +
Preference number: 1 (lower is better)
Translates to: GLCLWGWHGLWQWIF*RGHTAVLRDVLLLQ
Trigger: TTGAAGCAAAAGGACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAAGACCATGCCATCCCCACAGGCAGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CCA 90 bp ATACCTCGAACCAGGGGAGGTAGCTTAAGATACAGAAGCAGCTCTTaGCTCCTGAAGATAAGCGGCAGAACCCGAATCTCTGTTTGCTGT +
Preference number: 1 (lower is better)
Translates to: IPRTRGGSLRYRSSS*LLKISGRTRISVCC
Trigger: ACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTATCTTAAGCTACCTCCCCTGGTTCGAGGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000143095.8
3UTR TCA 90 bp TCTTTGGCAGTGGATCTTCTGCAGAGGACACACAGCCGTTCTCCGTaGTGTCCTTTTGCTTCAAGCGGTTTTTCACCTCCTTTATTCCCA +
Preference number: 1 (lower is better)
Translates to: SLAVDLLQRTHSRSP*CPFASSGFSPPLFP
Trigger: TGGGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CCA 90 bp CTGGGCTTGAAAGCAGCCTTGAGCTTCTTGACTCCTCTTGGGCTATaGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAA +
Preference number: 1 (lower is better)
Translates to: LGLKAALSFLTPLGL*EDRIQLVQLTYSAK
Trigger: TTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCTCAAGGCTGCTTTCAAGCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR GCA 90 bp CAGATGATGAGGATCCGGCGTTCATACAGCATGCTGGCGTACAGATaGAACATGTTGTTCACATCCACAGCCACAAAATATTCTGTCAGA +
Preference number: 1 (lower is better)
Translates to: QMMRIRRSYSMLAYR*NMLFTSTATKYSVR
Trigger: TCTGACAGAATATTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAACGCCGGATCCTCATCATCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR CCA 90 bp GAGAGTGGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGGCCAATCTGCCCTGTGGGGTaGGGCCCAGCAAAGGAGGAG +
Preference number: 2 (lower is better)
Translates to: ESGEGWLPGPHLPHAQRPICPVG*GPAKEE
Trigger: CTCCTCCTTTGCTGGGCCCCACCCCACAGGGCAGAT...TGGCCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR CCA 90 bp GAGAGTGGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGGCCACTGACATCTGCCCTGTaGGGTGGGGCCCAGCAAAGG +
Preference number: 2 (lower is better)
Translates to: ESGEGWLPGPHLPHAQRPLTSAL*GGAQQR
Trigger: CCTTTGCTGGGCCCCACCCCACAGGGCAGATGTCAG...TGGCCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR CCA 90 bp GAGAGTGGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGGCCACCCTCCCTTTGTCTGTaGCAGGAAGCTTGTCCTTTG +
Preference number: 2 (lower is better)
Translates to: ESGEGWLPGPHLPHAQRPPSLCL*QEACPL
Trigger: CAAAGGACAAGCTTCCTGCCACAGACAAAGGGAGGG...TGGCCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR GCA 90 bp ACGCTCAGAGGCCACGTGTATCTTCACTCCATGGGGGAACCTGGGGAGCCCTGGAAAACCCACACAGGGTaGCAAGGGTGGCGGCAGGCA +
Preference number: 2 (lower is better)
Translates to: TLRGHVYLHSMGEPGEPWKTHTG*QGWRQA
Trigger: TGCCTGCCGCCACCCTTGGCACCCTGTGTGGGTTTT...CCAGGGCTCCCCAGGTTCCCCCATGGAGTGAAGATACACGTGGCCTCTGAGCGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR TCA 90 bp ACGCTCAGAGGCCACGTGTATCTTCACTCCATGGGGGAACCTGGGGAGCCCTGGAGGTCTCCAGACCCCTaGCCCTTCAGGAACAACTCC +
Preference number: 2 (lower is better)
Translates to: TLRGHVYLHSMGEPGEPWRSPDP*PFRNNS
Trigger: GGAGTTGTTCCTGAAGGGTCAGGGGTCTGGAGACCT...CCAGGGCTCCCCAGGTTCCCCCATGGAGTGAAGATACACGTGGCCTCTGAGCGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR CCA 90 bp AAGTTAGAGTTGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTGCCAGGCCTCAGAGATaGGCTGTGGAGGAGGGGGCA +
Preference number: 2 (lower is better)
Translates to: KLELLVFPTPGRAGWGWVARPQR*AVEEGA
Trigger: TGCCCCCTCCTCCACAGCCCATCTCTGAGGCCTGGC...AACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAACTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR CCA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCGGCAGGCAGCTCTTCTaGGATGGCCATTCCCAGGGC +
Preference number: 2 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSGRQLF*DGHSQG
Trigger: GCCCTGGGAATGGCCATCCCAGAAGAGCTGCCTGCC...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 90 bp CATCTGCCCTGTGGGGTGGGGCCCAGCAAAGGAGGAGAGCTGGGCTaGAAAGCAGCCTTGAGCTTCTTGACTCCTCTTGGGCTATGGGAG +
Preference number: 2 (lower is better)
Translates to: HLPCGVGPSKGGELG*KAALSFLTPLGLWE
Trigger: CTCCCATAGCCCAAGAGGAGTCAAGAAGCTCAAGGCTGCTTTCAAGCCCAGCTCTCCTCCTTTGCTGGGCCCCACCCCACAGGGCAGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR CCA 90 bp TGCTTACACAGGTTGTTACTGACATCTGCCCTGTGGGGTGGGGCCCAGCAAAGGGCAGCTCTTCTGGGATaGCCATTCCCAGGGCCAGGC +
Preference number: 2 (lower is better)
Translates to: CLHRLLLTSALWGGAQQRAALLG*PFPGPG
Trigger: GCCTGGCCCTGGGAATGGCCATCCCAGAAGAGCTGC...CCTTTGCTGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 90 bp GGGCTTGAGACAGATGTCCTCCTGCCTTCCACAGTGATGTTGCTCTaGGGTCTCCTGACGACATGTGGACGAGGAGGCCGTACCTGCCCA +
Preference number: 2 (lower is better)
Translates to: GLETDVLLPSTVMLL*GLLTTCGRGGRTCP
Trigger: TGGGCAGGTACGGCCTCCTCGTCCACATGTCGTCAGGAGACCCAAGAGCAACATCACTGTGGAAGGCAGGAGGACATCTGTCTCAAGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CAA 90 bp GGGGTGGGGCCCAGCAAAGGAGGAGAGCTGGGCTTGAAAGCAGCCTaGAGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAG +
Preference number: 2 (lower is better)
Translates to: GVGPSKGGELGLKAA*SFLTPLGLWEDRIQ
Trigger: CTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCTCAAGGCTGCTTTCAAGCCCAGCTCTCCTCCTTTGCTGGGCCCCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 90 bp AGCATGGCAGCTGAGCCGTGGATGCAGGCCGTCAATGTACTGAGCTaGCTGCAGATGATGAGGATCCGGCGTTCATACAGCATGCTGGCG +
Preference number: 2 (lower is better)
Translates to: SMAAEPWMQAVNVLS*LQMMRIRRSYSMLA
Trigger: CGCCAGCATGCTGTATGAACGCCGGATCCTCATCATCTGCAGCAAGCTCAGTACATTGACGGCCTGCATCCACGGCTCAGCTGCCATGCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000150896.8
3UTR CAA 90 bp TGCTCAGGGCTTGAGACAGATGTCCTCCTGCCTTCCACAGTGATGTaGCTCTTGGGTCTCCTGACGACATGTGGACGAGGAGGCCGTACC +
Preference number: 2 (lower is better)
Translates to: CSGLETDVLLPSTVM*LLGLLTTCGRGGRT
Trigger: GGTACGGCCTCCTCGTCCACATGTCGTCAGGAGACCCAAGAGCAACATCACTGTGGAAGGCAGGAGGACATCTGTCTCAAGCCCTGAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR GCA 90 bp GACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGTGGAATCTGGGTCACTaGTGCCCAGCTCTGCCCATA +
Preference number: 2 (lower is better)
Translates to: DLGSGISALSRSWREWGGWNLGH*CPALPI
Trigger: TATGGGCAGAGCTGGGCAGCAGTGACCCAGATTCCA...CCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 90 bp AGCTCTAACAGCTGTGCCTCCCTCCCTTTGTCTGTGGCAGGAAGCTaGTCCTTTGAGTTGGAATCTGGGTCACTGCTGCCCAGCTCTGCC +
Preference number: 2 (lower is better)
Translates to: SSNSCASLPLSVAGS*SFELESGSLLPSSA
Trigger: GGCAGAGCTGGGCAGCAGTGACCCAGATTCCAACTCAAAGGACAAGCTTCCTGCCACAGACAAAGGGAGGGAGGCACAGCTGTTAGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR TCA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCTACACAGGTTGTTACTaGCATCTGCCCTGTGGGGTG +
Preference number: 2 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSYTGCY*HLPCGV
Trigger: CACCCCACAGGGCAGATGTCAGTAACAACCTGTGTA...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR TCA 90 bp GACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGAGAGAGGTTTGGAGATaGCCACCAGGGAGAAATGCC +
Preference number: 2 (lower is better)
Translates to: DLGSGISALSRSWREWGGREVWR*PPGRNA
Trigger: GGCATTTCTCCCTGGTGGTCATCTCCAAACCTCTCT...CCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 90 bp CCCAGCAAAGGAGGAGAGCTGGGCTTGAAAGCAGCCTTGAGCTTCTaGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAG +
Preference number: 2 (lower is better)
Translates to: PSKGGELGLKAALSF*TPLGLWEDRIQLVQ
Trigger: CTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCTCAAGGCTGCTTTCAAGCCCAGCTCTCCTCCTTTGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 90 bp TTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTaGACATATAGTGCAAAACCCACACAGGGTGCCAAGGGTGGCGGC +
Preference number: 2 (lower is better)
Translates to: LTPLGLWEDRIQLVQ*TYSAKPTQGAKGGG
Trigger: GCCGCCACCCTTGGCACCCTGTGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR TCA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCCAGTTGGTGGTTAGGTaGAGACTCAGGAAAGAGTAT +
Preference number: 2 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSQLVVR*RLRKEY
Trigger: ATACTCTTTCCTGAGTCTTCACCTAACCACCAACTG...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR CCA 90 bp TCTGGCCACCCCATCACCTGTGGTTGTAGAGACCTTCTTCAGCCTGTTCTTCAGTACAGAAGCAGCTCTTaGCTCCTGAAGATAAGCGGC +
Preference number: 2 (lower is better)
Translates to: SGHPITCGCRDLLQPVLQYRSSS*LLKISG
Trigger: GCCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTA...CTGAAGAACAGGCTGAAGAAGGTCTCTACAACCACAGGTGATGGGGTGGCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR CCA 90 bp AGTGGATCTTCTGCAGAGGACACACAGCCGTTCTCCGTGATGTCCTTTTGCTTCGTAGGAACTGTTTCATaGCTCCAGAGCGGTAGTGGG +
Preference number: 2 (lower is better)
Translates to: SGSSAEDTQPFSVMSFCFVGTVS*LQSGSG
Trigger: CCCACTACCGCTCTGGAGCCATGAAACAGTTCCTAC...GAAGCAAAAGGACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR TCA 90 bp ACCTTCTTCAGCCTGTTCTTCAGGGAGGAGATCACATCATTTGGGAGGCTCTGGGAATGCACACTGAGGTaGACAGACACTCCAGGATCA +
Preference number: 2 (lower is better)
Translates to: TFFSLFFREEITSFGRLWECTLR*TDTPGS
Trigger: TGATCCTGGAGTGTCTGTTCACCTCAGTGTGCATTC...CCAGAGCCTCCCAAATGATGTGATCTCCTCCCTGAAGAACAGGCTGAAGAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CAA 90 bp CAGCTCTTGGCTCCTGAAGATAAGCGGCAGAACCCGAATCTCTGTTaGCTGTCAATGTCAGTGAGCACAAATGTGAAGTTCTGGCCAACT +
Preference number: 2 (lower is better)
Translates to: QLLAPEDKRQNPNLC*LSMSVSTNVKFWPT
Trigger: AGTTGGCCAGAACTTCACATTTGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCCAAGAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000143095.8
3UTR-3UTR TCA 90 bp ACCTGTGGTTGTAGAGACCTTCTTCAGCCTGTTCTTCAGGGAGGAGATCACATCAGTAAGAATGCACACTaGGGTGAACAGACACTCCAG +
Preference number: 2 (lower is better)
Translates to: TCGCRDLLQPVLQGGDHISKNAH*GEQTLQ
Trigger: CTGGAGTGTCTGTTCACCTCAGTGTGCATTCTTACT...GATGTGATCTCCTCCCTGAAGAACAGGCTGAAGAAGGTCTCTACAACCACAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR GCA 90 bp TGGAGGTCATCAAAAGGGGTTTCCAGGGTGTTGGTGTCCACGTTCAAGATCACAATGCTGGCGTACAGATaGAACATGTTGTTCACATCC +
Preference number: 2 (lower is better)
Translates to: WRSSKGVSRVLVSTFKITMLAYR*NMLFTS
Trigger: GGATGTGAACAACATGTTGCATCTGTACGCCAGCAT...TGTGATCTTGAACGTGGACACCAACACCCTGGAAACCCCTTTTGATGACCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000150896.8
3UTR-3UTR GCA 90 bp GCCGTTCTCCGTGATGTCCTTTTGCTTCAAGCGGTTTTTCACCTCCTTTATTCCCGGCCATCGATAAACTaGTTGAAGAGCTGCAACTGT +
Preference number: 2 (lower is better)
Translates to: AVLRDVLLLQAVFHLLYSRPSIN*LKSCNC
Trigger: ACAGTTGCAGCTCTTCAAGCAGTTTATCGATGGCCG...GGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAACGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CAA 90 bp ATGTTGATTTCCTCCTCAAAGACATCGCTGAAACCTTCACCGGAATaGAGAAGGTCTAGTCGGCCATCGATAAACTGCTTGAAGAGCTGC +
Preference number: 2 (lower is better)
Translates to: MLISSSKTSLKPSPE*RRSSRPSINCLKSC
Trigger: GCAGCTCTTCAAGCAGTTTATCGATGGCCGACTAGACCTTCTCAATTCCGGTGAAGGTTTCAGCGATGTCTTTGAGGAGGAAATCAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR GCA 90 bp ATCATTTGGGAGGCTCTGGAGGTCATCAAAAGGGGTTTCCAGGGTGTTGGTGTCTTTCGTCGTGTAATCTaGCAAGATGTTAAGGAGCTT +
Preference number: 2 (lower is better)
Translates to: IIWEALEVIKRGFQGVGVFRRVI*QDVKEL
Trigger: AAGCTCCTTAACATCTTGGCAGATTACACGACGAAA...GACACCAACACCCTGGAAACCCCTTTTGATGACCTCCAGAGCCTCCCAAATGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR CCA 90 bp TGTGCAGAGTTTCAAGAAGTTCATTCCACTGACTTTCCTGTCGTTTCGTCGTGTTACAGAAGCAGCTCTTaGCTCCTGAAGATAAGCGGC +
Preference number: 2 (lower is better)
Translates to: CAEFQEVHSTDFPVVSSCYRSSS*LLKISG
Trigger: GCCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTA...ACACGACGAAACGACAGGAAAGTCAGTGGAATGAACTTCTTGAAACTCTGCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000143095.8
3UTR-3UTR CCA 90 bp GCCGTTCTCCGTGATGTCCTTTTGCTTCAAGCGGTTTTTCACCTCCTTTATTCCTATTCTCAGGTATGCTaGGAAGCTCTCTGCTATCAG +
Preference number: 2 (lower is better)
Translates to: AVLRDVLLLQAVFHLLYSYSQVC*EALCYQ
Trigger: CTGATAGCAGAGAGCTTCCCAGCATACCTGAGAATA...GGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAACGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR GCA 90 bp GCCGTTCTCCGTGATGTCCTTTTGCTTCAAGCGGTTTTTCACCTCCTTTATTCCTTCTATTCTCAGGTATaGTGGGAAGCTCTCTGCTAT +
Preference number: 2 (lower is better)
Translates to: AVLRDVLLLQAVFHLLYSFYSQV*WEALCY
Trigger: ATAGCAGAGAGCTTCCCAGCATACCTGAGAATAGAA...GGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAACGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CAA 90 bp AGGATCCGGCGTTCATACAGCATGCTGGCGTACAGATGCAACATGTaGTTCACATCCACAGCCACAAAATATTCTGTCAGATTTCTATTC +
Preference number: 2 (lower is better)
Translates to: RIRRSYSMLAYRCNM*FTSTATKYSVRFLF
Trigger: GAATAGAAATCTGACAGAATATTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAACGCCGGATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CCA 72 bp CTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCTaGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGG +
Preference number: 3 (lower is better)
Translates to: LRCREAGESGEG*LPGPHLPHAQR
Trigger: CCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR CAA 90 bp GAGAGTGGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGGCCAAGCTTGTCCTTTGAGTaGGAATCTGGGTCACTGCTG +
Preference number: 3 (lower is better)
Translates to: ESGEGWLPGPHLPHAQRPSLSFE*ESGSLL
Trigger: CAGCAGTGACCCAGATTCCAACTCAAAGGACAAGCT...TGGCCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR GCA 72 bp TCTCCGGTCTTCTCGAAGTCTGGGGTCCTGGGTCTCTaGCTGTGGGGATGGCATGGTCTTTGGCAGTGGATC +
Preference number: 3 (lower is better)
Translates to: SPVFSKSGVLGL*LWGWHGLWQWI
Trigger: GATCCACTGCCAAAGACCATGCCATCCCCACAGGCAGAGACCCAGGACCCCAGACTTCGAGAAGACCGGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CCA 72 bp GTGATTGGTCTCCGGTCTTCTCGAAGTCTGGGGTCCTaGGTCTCTGCCTGTGGGGATGGCATGGTCTTTGGC +
Preference number: 3 (lower is better)
Translates to: VIGLRSSRSLGS*VSACGDGMVFG
Trigger: GCCAAAGACCATGCCATCCCCACAGGCAGAGACCCAGGACCCCAGACTTCGAGAAGACCGGAGACCAATCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CCA 72 bp ACGAGGAGGCCGTACCTGCCCAAAGTGGACTGTGATTaGTCTCCGGTCTTCTCGAAGTCTGGGGTCCTGGGT +
Preference number: 3 (lower is better)
Translates to: TRRPYLPKVDCD*SPVFSKSGVLG
Trigger: ACCCAGGACCCCAGACTTCGAGAAGACCGGAGACCAATCACAGTCCACTTTGGGCAGGTACGGCCTCCTCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR CAA 90 bp ACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCTGTGCCTCCCTCCCTTaGTCTGTGGCAGGAAGCTTG +
Preference number: 3 (lower is better)
Translates to: TWAQEFLRCREAGESGEGCASLP*SVAGSL
Trigger: CAAGCTTCCTGCCACAGACAAAGGGAGGGAGGCACA...GCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR CAA 90 bp ACGCTCAGAGGCCACGTGTATCTTCACTCCATGGGGGAACCTGGGGAGCCCTGGCTGTGCTTACACAGGTaGTTACTGACATCTGCCCTG +
Preference number: 3 (lower is better)
Translates to: TLRGHVYLHSMGEPGEPWLCLHR*LLTSAL
Trigger: CAGGGCAGATGTCAGTAACAACCTGTGTAAGCACAG...CCAGGGCTCCCCAGGTTCCCCCATGGAGTGAAGATACACGTGGCCTCTGAGCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR TCA 72 bp ACACGAGAGCCCAGAGGTATGAGGGTGGCAGAGAGCTaGGGGCGGCTCCTAAGACTCAGGTTTGGAGCTTCT +
Preference number: 3 (lower is better)
Translates to: TREPRGMRVAES*GRLLRLRFGAS
Trigger: AGAAGCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCTCTGGGCTCTCGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR GCA 72 bp CCCAAAGCTGTGCTTACACAGGTTGTTACTGACATCTaGCCTGTGGGGTGGGGCCCAGCAAAGGAGGAGAGC +
Preference number: 3 (lower is better)
Translates to: PKAVLTQVVTDI*PVGWGPAKEES
Trigger: GCTCTCCTCCTTTGCTGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCACAGCTTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CCA 72 bp GGTCTCTGCCTGTGGGGATGGCATGGTCTTTGGCAGTaGATCTTCTGCAGAGGACACACAGCCGTTCTCCGT +
Preference number: 3 (lower is better)
Translates to: GLCLWGWHGLWQ*IFCRGHTAVLR
Trigger: ACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAAGACCATGCCATCCCCACAGGCAGAGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CCA 72 bp GTCCTGGGTCTCTGCCTGTGGGGATGGCATGGTCTTTaGCAGTGGATCTTCTGCAGAGGACACACAGCCGTT +
Preference number: 3 (lower is better)
Translates to: VLGLCLWGWHGL*QWIFCRGHTAV
Trigger: AACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAAGACCATGCCATCCCCACAGGCAGAGACCCAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR TCA 72 bp CTCCCTCCCTTTGTCTGTGGCAGGAAGCTTGTCCTTTaGGTTGGAATCTGGGTCACTGCTGCCCAGCTCTGC +
Preference number: 3 (lower is better)
Translates to: LPPFVCGRKLVL*VGIWVTAAQLC
Trigger: GCAGAGCTGGGCAGCAGTGACCCAGATTCCAACTCAAAGGACAAGCTTCCTGCCACAGACAAAGGGAGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CCA 72 bp GTTAGAGTTGCTGGTGTTCCCAACCCCTGGAAGAGCTaGCTGGGGCTGGGTTTGCTGACCATTAGGTCTCCA +
Preference number: 3 (lower is better)
Translates to: VRVAGVPNPWKS*LGLGLLTIRSP
Trigger: TGGAGACCTAATGGTCAGCAAACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CCA 72 bp ACGACATGTGGACGAGGAGGCCGTACCTGCCCAAAGTaGACTGTGATTGGTCTCCGGTCTTCTCGAAGTCTG +
Preference number: 3 (lower is better)
Translates to: TTCGRGGRTCPK*TVIGLRSSRSL
Trigger: CAGACTTCGAGAAGACCGGAGACCAATCACAGTCCACTTTGGGCAGGTACGGCCTCCTCGTCCACATGTCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CCA 72 bp CACAGTGATGTTGCTCTTGGGTCTCCTGACGACATGTaGACGAGGAGGCCGTACCTGCCCAAAGTGGACTGT +
Preference number: 3 (lower is better)
Translates to: HSDVALGSPDDM*TRRPYLPKVDC
Trigger: ACAGTCCACTTTGGGCAGGTACGGCCTCCTCGTCCACATGTCGTCAGGAGACCCAAGAGCAACATCACTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR CAA 90 bp ACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCCAGGAAGCTTGTCCTTaGAGTTGGAATCTGGGTCAC +
Preference number: 3 (lower is better)
Translates to: TWAQEFLRCREAGESGEGQEACP*SWNLGH
Trigger: GTGACCCAGATTCCAACTCAAAGGACAAGCTTCCTG...GCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR TCA 72 bp GGGCTGGGTTTGCTGACCATTAGGTCTCCAGACCCCTaGCCCTTCAGGAACAACTCCAGTTGGTGGTTAGGT +
Preference number: 3 (lower is better)
Translates to: GLGLLTIRSPDP*PFRNNSSWWLG
Trigger: ACCTAACCACCAACTGGAGTTGTTCCTGAAGGGTCAGGGGTCTGGAGACCTAATGGTCAGCAAACCCAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR TCA 72 bp CACATGCTGCCAGTACATAGGGTAGAGCATGGCAGCTaGGCCGTGGATGCAGGCCGTCAATGTACTGAGCTT +
Preference number: 3 (lower is better)
Translates to: HMLPVHRVEHGS*AVDAGRQCTEL
Trigger: AAGCTCAGTACATTGACGGCCTGCATCCACGGCTCAGCTGCCATGCTCTACCCTATGTACTGGCAGCATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000150896.8
3UTR GCA 72 bp CTGTGGGGATGGCATGGTCTTTGGCAGTGGATCTTCTaGAGAGGACACACAGCCGTTCTCCGTGATGTCCTT +
Preference number: 3 (lower is better)
Translates to: LWGWHGLWQWIF*RGHTAVLRDVL
Trigger: AAGGACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAAGACCATGCCATCCCCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR CAA 90 bp TGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTTGCTGACCATATACAGCTGGTCCAGTaGACATATAGTGCAAAACCC +
Preference number: 3 (lower is better)
Translates to: CWCSQPLEELAGAGFADHIQLVQ*TYSAKP
Trigger: GGGTTTTGCACTATATGTCAACTGGACCAGCTGTAT...ATGGTCAGCAAACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR GCA 72 bp CAGGAAGCTTGTCCTTTGAGTTGGAATCTGGGTCACTaGTGCCCAGCTCTGCCCATAAAGCTCCAAGTGGCA +
Preference number: 3 (lower is better)
Translates to: QEACPLSWNLGH*CPALPIKLQVA
Trigger: TGCCACTTGGAGCTTTATGGGCAGAGCTGGGCAGCAGTGACCCAGATTCCAACTCAAAGGACAAGCTTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CCA 72 bp TCCCTTTGTCTGTGGCAGGAAGCTTGTCCTTTGAGTTaGAATCTGGGTCACTGCTGCCCAGCTCTGCCCATA +
Preference number: 3 (lower is better)
Translates to: SLCLWQEACPLS*NLGHCCPALPI
Trigger: TATGGGCAGAGCTGGGCAGCAGTGACCCAGATTCCAACTCAAAGGACAAGCTTCCTGCCACAGACAAAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CCA 72 bp GGAGCTCTAACAGCTGTGCCTCCCTCCCTTTGTCTGTaGCAGGAAGCTTGTCCTTTGAGTTGGAATCTGGGT +
Preference number: 3 (lower is better)
Translates to: GALTAVPPSLCL*QEACPLSWNLG
Trigger: ACCCAGATTCCAACTCAAAGGACAAGCTTCCTGCCACAGACAAAGGGAGGGAGGCACAGCTGTTAGAGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR CAA 90 bp CACAGTGATGTTGCTCTTGGGTCTCCTGACGACATGTGGACGAGGAGGCCGTACAACCCGAATCTCTGTTaGCTGTCAATGTCAGTGAGC +
Preference number: 3 (lower is better)
Translates to: HSDVALGSPDDMWTRRPYNPNLC*LSMSVS
Trigger: GCTCACTGACATTGACAGCAAACAGAGATTCGGGTT...GTACGGCCTCCTCGTCCACATGTCGTCAGGAGACCCAAGAGCAACATCACTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR TCA 72 bp TTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTaGCATATAGTGCAAAACCCACACAGGGTGCCAAGG +
Preference number: 3 (lower is better)
Translates to: LGYGRIGYSWSS*HIVQNPHRVPR
Trigger: CCTTGGCACCCTGTGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR TCA 72 bp CTCAGGAAAGAGTATATTGCTAGAGAGGTTTGGAGATaGCCACCAGGGAGAAATGCCAGCCTAGGAGTGGGC +
Preference number: 3 (lower is better)
Translates to: LRKEYIAREVWR*PPGRNASLGVG
Trigger: GCCCACTCCTAGGCTGGCATTTCTCCCTGGTGGTCATCTCCAAACCTCTCTAGCAATATACTCTTTCCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR TCA 72 bp GTGGATCTTCTGCAGAGGACACACAGCCGTTCTCCGTaGTGTCCTTTTGCTTCAAGCGGTTTTTCACCTCCT +
Preference number: 3 (lower is better)
Translates to: VDLLQRTHSRSP*CPFASSGFSPP
Trigger: AGGAGGTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CCA 72 bp ACCAGGGGAGGTAGCTTAAGATACAGAAGCAGCTCTTaGCTCCTGAAGATAAGCGGCAGAACCCGAATCTCT +
Preference number: 3 (lower is better)
Translates to: TRGGSLRYRSSS*LLKISGRTRIS
Trigger: AGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTATCTTAAGCTACCTCCCCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000143095.8
3UTR CCA 72 bp TTCTTCAGGGAGGAGATCACATCATTTGGGAGGCTCTaGAGGTCATCAAAAGGGGTTTCCAGGGTGTTGGTG +
Preference number: 3 (lower is better)
Translates to: FFREEITSFGRL*RSSKGVSRVLV
Trigger: CACCAACACCCTGGAAACCCCTTTTGATGACCTCCAGAGCCTCCCAAATGATGTGATCTCCTCCCTGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000150896.8
3UTR CCA 72 bp GCTGCAACTGTGTGGCATTCTGTAGGAACTGTTTCATaGCTCCAGAGCGGTAGTGGGATACAAAGGCTTCCT +
Preference number: 3 (lower is better)
Translates to: AATVWHSVGTVS*LQSGSGIQRLP
Trigger: AGGAAGCCTTTGTATCCCACTACCGCTCTGGAGCCATGAAACAGTTCCTACAGAATGCCACACAGTTGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR CAA 90 bp TGGAGGTCATCAAAAGGGGTTTCCAGGGTGTTGGTGTCCACGTTCAAGATCACAATACAGAAGCAGCTCTaGGCTCCTGAAGATAAGCGG +
Preference number: 3 (lower is better)
Translates to: WRSSKGVSRVLVSTFKITIQKQL*APEDKR
Trigger: CCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTAT...TGTGATCTTGAACGTGGACACCAACACCCTGGAAACCCCTTTTGATGACCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR GCA 72 bp ACTGAAAGTGATGGGTTCTTCTGGCTCAATTTTCAGTaGATTCCGGTAGCTGCCAAAGAAAGCAGCCTGGGC +
Preference number: 3 (lower is better)
Translates to: TESDGFFWLNFQ*IPVAAKESSLG
Trigger: GCCCAGGCTGCTTTCTTTGGCAGCTACCGGAATGCACTGAAAATTGAGCCAGAAGAACCCATCACTTTCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR GCA 72 bp GCAGAGGACACACAGCCGTTCTCCGTGATGTCCTTTTaGTTCAAGCGGTTTTTCACCTCCTTTATTCCCATT +
Preference number: 3 (lower is better)
Translates to: AEDTQPFSVMSF*FKRFFTSFIPI
Trigger: AATGGGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAACGGCTGTGTGTCCTCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CCA 72 bp AAAGCAGCCTTGAGCTTCTTGACTCCTCTTGGGCTATaGGAGGATAGGATACAGCTGGTCCAGTTGACATAT +
Preference number: 3 (lower is better)
Translates to: KAALSFLTPLGL*EDRIQLVQLTY
Trigger: ATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCTCAAGGCTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR CAA 90 bp AGTTGGTGGTTAGGTGAAGACTCAGGAAAGAGTATATTGCTAGAGAGGTTTGGAGCAGCCTTGAGCTTCTaGACTCCTCTTGGGCTATGG +
Preference number: 3 (lower is better)
Translates to: SWWLGEDSGKSILLERFGAALSF*TPLGLW
Trigger: CCATAGCCCAAGAGGAGTCAAGAAGCTCAAGGCTGC...TCCAAACCTCTCTAGCAATATACTCTTTCCTGAGTCTTCACCTAACCACCAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR-3UTR CAA 90 bp GCCGTTCTCCGTGATGTCCTTTTGCTTCAAGCGGTTTTTCACCTCCTTTATTCCCCATCGATAAACTGCTaGAAGAGCTGCAACTGTGTG +
Preference number: 3 (lower is better)
Translates to: AVLRDVLLLQAVFHLLYSPSINC*KSCNCV
Trigger: CACACAGTTGCAGCTCTTCAAGCAGTTTATCGATGG...GGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAACGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR GCA 72 bp AGGATCCGGCGTTCATACAGCATGCTGGCGTACAGATaGAACATGTTGTTCACATCCACAGCCACAAAATAT +
Preference number: 3 (lower is better)
Translates to: RIRRSYSMLAYR*NMLFTSTATKY
Trigger: ATATTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAACGCCGGATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000150896.8
3UTR GCA 72 bp AGGTCTAGTCGGCCATCGATAAACTGCTTGAAGAGCTaGAACTGTGTGGCATTCTGTAGGAACTGTTTCATG +
Preference number: 3 (lower is better)
Translates to: RSSRPSINCLKS*NCVAFCRNCFM
Trigger: CATGAAACAGTTCCTACAGAATGCCACACAGTTGCAGCTCTTCAAGCAGTTTATCGATGGCCGACTAGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR-3UTR CAA 90 bp GTGCAGAGTTTCAAGAAGTTCATTCCACTGACTTTCCTGTCGTTTCGTCGTGTAAACCCGAATCTCTGTTaGCTGTCAATGTCAGTGAGC +
Preference number: 3 (lower is better)
Translates to: VQSFKKFIPLTFLSFRRVNPNLC*LSMSVS
Trigger: GCTCACTGACATTGACAGCAAACAGAGATTCGGGTT...TACACGACGAAACGACAGGAAAGTCAGTGGAATGAACTTCTTGAAACTCTGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000143095.8
3UTR-3UTR CAA 90 bp AAGTCTGTGCAGAGTTTCAAGAAGTTCATTCCACTGACTTTCCTGTCGTTTCGTATACAGAAGCAGCTCTaGGCTCCTGAAGATAAGCGG +
Preference number: 3 (lower is better)
Translates to: KSVQSFKKFIPLTFLSFRIQKQL*APEDKR
Trigger: CCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTAT...ACGAAACGACAGGAAAGTCAGTGGAATGAACTTCTTGAAACTCTGCACAGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000143095.8
3UTR GCA 72 bp ATTCCACTGACTTTCCTGTCGTTTCGTCGTGTAATCTaGCAAGATGTTAAGGAGCTTATAGAATACCTCGAA +
Preference number: 3 (lower is better)
Translates to: IPLTFLSFRRVI*QDVKELIEYLE
Trigger: TTCGAGGTATTCTATAAGCTCCTTAACATCTTGGCAGATTACACGACGAAACGACAGGAAAGTCAGTGGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000143095.8
CDS-3UTR CCA 90 bp GAGAGTGGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGGCCAGGCCAGGGCCGGGGCTaGGCTTGGGCTCACATCTTG +
Preference number: 4 (lower is better)
Translates to: ESGEGWLPGPHLPHAQRPGQGRG*AWAHIL
Trigger: CAAGATGTGAGCCCAAGCCCAGCCCCGGCCCTGGCC...TGGCCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp GAGAGTGGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGGCCAGATGTGATGGGATGGTaGTGCCTGACCAGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: ESGEGWLPGPHLPHAQRPDVMGW*CLTRLC
Trigger: ACACAGCCTGGTCAGGCAGCACCATCCCATCACATC...TGGCCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp TGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTTGCTGACCATAGCCTGGAGCTTGGCTaGCCGGGCAGTGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: CWCSQPLEELAGAGFADHSLELG*PGSGWW
Trigger: CCACCACCCACTGCCCGGCCAGCCAAGCTCCAGGCT...ATGGTCAGCAAACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GAGAGTGGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGGCCAGCACCCATTGGGATCTaGCCAAAGAGGTTGGGCATG +
Preference number: 4 (lower is better)
Translates to: ESGEGWLPGPHLPHAQRPAPIGI*PKRLGM
Trigger: CATGCCCAACCTCTTTGGCCAGATCCCAATGGGTGC...TGGCCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp GAGAGTGGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGGCCACACCACTTCCTTTCCTaGCTGTGGACAGCCACTGAT +
Preference number: 4 (lower is better)
Translates to: ESGEGWLPGPHLPHAQRPHHFLS*LWTATD
Trigger: ATCAGTGGCTGTCCACAGTCAGGAAAGGAAGTGGTG...TGGCCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp GAGAGTGGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGGCCAGAATGCACACTGAGGTaGACAGACACTCCAGGATCA +
Preference number: 4 (lower is better)
Translates to: ESGEGWLPGPHLPHAQRPECTLR*TDTPGS
Trigger: TGATCCTGGAGTGTCTGTTCACCTCAGTGTGCATTC...TGGCCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp AAACCCACACAGGGTGCCAAGGGTGGCGGCAGGCAGCTCTTCTGGGATGGCCATTGGGAGTCTCCTCCTTaGTGCTGGGGCTCAGGATGC +
Preference number: 4 (lower is better)
Translates to: KPTQGAKGGGRQLFWDGHWESPP*CWGSGC
Trigger: GCATCCTGAGCCCCAGCATCAAGGAGGAGACTCCCA...ATGGCCATCCCAGAAGAGCTGCCTGCCGCCACCCTTGGCACCCTGTGTGGGTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp TGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTTGCTGACCATGGGGTCCTGGGTCTCTaGCTGTGGGGATGGCATGGT +
Preference number: 4 (lower is better)
Translates to: CWCSQPLEELAGAGFADHGVLGL*LWGWHG
Trigger: ACCATGCCATCCCCACAGGCAGAGACCCAGGACCCC...ATGGTCAGCAAACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp TGCTTACACAGGTTGTTACTGACATCTGCCCTGTGGGGTGGGGCCCAGCAAAGGTGGCTGGCCGGGCAGTaGGTGGTGGAGGCACGATGC +
Preference number: 4 (lower is better)
Translates to: CLHRLLLTSALWGGAQQRWLAGQ*VVEARC
Trigger: GCATCGTGCCTCCACCACCCACTGCCCGGCCAGCCA...CCTTTGCTGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp ACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCGATCCTCCAGGCTCTTaGCTTGGCCCAGCGGCTGCA +
Preference number: 4 (lower is better)
Translates to: TWAQEFLRCREAGESGEGDPPGS*LGPAAA
Trigger: TGCAGCCGCTGGGCCAAGCCAAGAGCCTGGAGGATC...GCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GGAGGGGGCAGAGTCCCTTTGCCCCATGAAGCCTGGCTAGAAATGGGACGTTGGAGTTCTGTGGGACCTTaGGGGACAGCTCTGGGGAGC +
Preference number: 4 (lower is better)
Translates to: GGGRVPLPHEAWLEMGRWSSVGP*GTALGS
Trigger: GCTCCCCAGAGCTGTCCCCCAAGGTCCCACAGAACT...CCAACGTCCCATTTCTAGCCAGGCTTCATGGGGCAAAGGGACTCTGCCCCCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCGCAATGTTCGGATCCTaGAGGGGGCAACGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSAMFGS*RGQRLG
Trigger: CCCCAGCCGTTGCCCCCTCCAGGATCCGAACATTGC...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp ACGCTCAGAGGCCACGTGTATCTTCACTCCATGGGGGAACCTGGGGAGCCCTGGTCTGGGAGGCAACAGTaGGGATTCACCAGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: TLRGHVYLHSMGEPGEPWSGRQQ*GFTRPQ
Trigger: CTGAGGCCTGGTGAATCCCCACTGTTGCCTCCCAGA...CCAGGGCTCCCCAGGTTCCCCCATGGAGTGAAGATACACGTGGCCTCTGAGCGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp ACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCGGCCGGGGCTGGGCTTaGGCTCACATCTTGCTTGGT +
Preference number: 4 (lower is better)
Translates to: TWAQEFLRCREAGESGEGGRGWA*AHILLG
Trigger: ACCAAGCAAGATGTGAGCCCAAGCCCAGCCCCGGCC...GCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp AAACCCACACAGGGTGCCAAGGGTGGCGGCAGGCAGCTCTTCTGGGATGGCCATGCCCAAAGTGGACTGTaGTTGGTCTCCGGTCTTCTC +
Preference number: 4 (lower is better)
Translates to: KPTQGAKGGGRQLFWDGHAQSGL*LVSGLL
Trigger: GAGAAGACCGGAGACCAATCACAGTCCACTTTGGGC...ATGGCCATCCCAGAAGAGCTGCCTGCCGCCACCCTTGGCACCCTGTGTGGGTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp TGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTTGCTGACCATTGCTCTTGGGTCTCCTaGCGACATGTGGACGAGGAG +
Preference number: 4 (lower is better)
Translates to: CWCSQPLEELAGAGFADHCSWVS*RHVDEE
Trigger: CTCCTCGTCCACATGTCGTCAGGAGACCCAAGAGCA...ATGGTCAGCAAACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp ACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCTGGCTGCTCAGGGCTTaGGACAGATGTCCTCCTGCC +
Preference number: 4 (lower is better)
Translates to: TWAQEFLRCREAGESGEGWLLRA*DRCPPA
Trigger: GGCAGGAGGACATCTGTCTCAAGCCCTGAGCAGCCA...GCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp AAACCCACACAGGGTGCCAAGGGTGGCGGCAGGCAGCTCTTCTGGGATGGCCATGTGCATTCCGGTAGCTaGCAAAGAAAGCAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: KPTQGAKGGGRQLFWDGHVHSGS*QRKQPG
Trigger: CCCAGGCTGCTTTCTTTGGCAGCTACCGGAATGCAC...ATGGCCATCCCAGAAGAGCTGCCTGCCGCCACCCTTGGCACCCTGTGTGGGTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp GACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGGTAGGAACAGAGGGCTaGGGGGTTGGCTGTAGGCTC +
Preference number: 4 (lower is better)
Translates to: DLGSGISALSRSWREWGGVGTEG*GVGCRL
Trigger: GAGCCTACAGCCAACCCCGCAGCCCTCTGTTCCTAC...CCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp TGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTTGCTGACCATGGTCTTCTCGAAGTCTaGGGTCCTGGGTCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: CWCSQPLEELAGAGFADHGLLEV*GPGSLP
Trigger: AGGCAGAGACCCAGGACCCCAGACTTCGAGAAGACC...ATGGTCAGCAAACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GGAGGGGGCAGAGTCCCTTTGCCCCATGAAGCCTGGCTAGAAATGGGACGTTGGTCTCAGGGGAGGTTATaGAGGGCTTGCTGGGGATGG +
Preference number: 4 (lower is better)
Translates to: GGGRVPLPHEAWLEMGRWSQGRL*RACWGW
Trigger: CCATCCCCAGCAAGCCCTCCATAACCTCCCCTGAGA...CCAACGTCCCATTTCTAGCCAGGCTTCATGGGGCAAAGGGACTCTGCCCCCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GGAGGGGGCAGAGTCCCTTTGCCCCATGAAGCCTGGCTAGAAATGGGACGTTGGGATGCTGCCCGGAGTTaGGATGGGAGTCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: GGGRVPLPHEAWLEMGRWDAARS*DGSLLL
Trigger: AAGGAGGAGACTCCCATCCCAACTCCGGGCAGCATC...CCAACGTCCCATTTCTAGCCAGGCTTCATGGGGCAAAGGGACTCTGCCCCCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 72 bp GGTCCTGGGTCTCTGCCTGTGGGGATGGCATGGTCTTaGGCAGTGGATCTTCTGCAGAGGACACACAGCCGT +
Preference number: 4 (lower is better)
Translates to: GPGSLPVGMAWS*AVDLLQRTHSR
Trigger: ACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAAGACCATGCCATCCCCACAGGCAGAGACCCAGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
CDS-3UTR TCA 90 bp GAGAGTGGGGAGGGCTGGCTTCCAGGCCCCCACTTGCCGCACGCTCAGAGGCCACATACTCTCCCATGTTaGTTTCCTCCTCAAAGACAT +
Preference number: 4 (lower is better)
Translates to: ESGEGWLPGPHLPHAQRPHTLPC*FPPQRH
Trigger: ATGTCTTTGAGGAGGAAATCAACATGGGAGAGTATG...TGGCCTCTGAGCGTGCGGCAAGTGGGGGCCTGGAAGCCAGCCCTCCCCACTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp CCCCATGAAGCCTGGCTAGAAATGGGACGTTGGGGAGGCACAGTATTAGACAGTTCTGGGGAGCAGCCCTaGCAGGAGGGCTGGACTCAG +
Preference number: 4 (lower is better)
Translates to: PHEAWLEMGRWGGTVLDSSGEQP*QEGWTQ
Trigger: CTGAGTCCAGCCCTCCTGTCAGGGCTGCTCCCCAGA...ACTGTCTAATACTGTGCCTCCCCAACGTCCCATTTCTAGCCAGGCTTCATGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp AAAGCTGTGCTTACACAGGTTGTTACTGACATCTGCCCTGTGGGGTGGGGCCCAAGGTCTCCCACTGTCTaGGGAGCTGCTCCACGGAGG +
Preference number: 4 (lower is better)
Translates to: KAVLTQVVTDICPVGWGPRSPTV*GAAPRR
Trigger: CCTCCGTGGAGCAGCTCCGCAGACAGTGGGAGACCT...TGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCACAGCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp ACGCTCAGAGGCCACGTGTATCTTCACTCCATGGGGGAACCTGGGGAGCCCTGGGTAGGAACTGTTTCATaGCTCCAGAGCGGTAGTGGG +
Preference number: 4 (lower is better)
Translates to: TLRGHVYLHSMGEPGEPWVGTVS*LQSGSG
Trigger: CCCACTACCGCTCTGGAGCCATGAAACAGTTCCTAC...CCAGGGCTCCCCAGGTTCCCCCATGGAGTGAAGATACACGTGGCCTCTGAGCGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGTCTGAGAGGCAGGGCTaGGGAAGTACCAAGCAGAGC +
Preference number: 4 (lower is better)
Translates to: DLGSGISALSRSWREWGGSERQG*GSTKQS
Trigger: GCTCTGCTTGGTACTTCCCCAGCCCTGCCTCTCAGA...CCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGCCGGGCAGTGGGTGGTaGAGGCACGATGCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLPGSGW*RHDAQL
Trigger: GAGCTGGGCATCGTGCCTCCACCACCCACTGCCCGG...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AAAGCTGTGCTTACACAGGTTGTTACTGACATCTGCCCTGTGGGGTGGGGCCCAGGCTCTGGGGCGGTCTaGGAGGCAACAGTGGGGATT +
Preference number: 4 (lower is better)
Translates to: KAVLTQVVTDICPVGWGPGSGAV*EATVGI
Trigger: AATCCCCACTGTTGCCTCCCAGACCGCCCCAGAGCC...TGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCACAGCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGAAGCAGCCTGGGCCTTaGGGAAGGCTCTGGCCACCC +
Preference number: 4 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLKQPGP*GRLWPP
Trigger: GGGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGCTT...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp AAGTTAGAGTTGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTTGGGATGGTGCTGCCTaGCCAGGCTGTGTTAAGTGG +
Preference number: 4 (lower is better)
Translates to: KLELLVFPTPGRAGWGWVWDGAA*PGCVKW
Trigger: CCACTTAACACAGCCTGGTCAGGCAGCACCATCCCA...AACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCCGAGGAGGCCGTACCTaGCCAAAGTGGACTGTGATT +
Preference number: 4 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSRGGRT*PKWTVI
Trigger: AATCACAGTCCACTTTGGGCAGGTACGGCCTCCTCG...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCAGGTTATGGAGGGCTTaGTGGGGATGGCCATGTCGT +
Preference number: 4 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSRLWRA*WGWPCR
Trigger: ACGACATGGCCATCCCCAGCAAGCCCTCCATAACCT...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp TGCTTACACAGGTTGTTACTGACATCTGCCCTGTGGGGTGGGGCCCAGCAAAGGCTCTGCCTGTGGGGATaGCATGGTCTTTGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: CLHRLLLTSALWGGAQQRLCLWG*HGLWQW
Trigger: CCACTGCCAAAGACCATGCCATCCCCACAGGCAGAG...CCTTTGCTGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp CCCCATGAAGCCTGGCTAGAAATGGGACGTTGGGGAGGCACAGTATTAGACAGTTCCAGGCTCTTGGCTTaGCCCAGCGGCTGCAGTGGT +
Preference number: 4 (lower is better)
Translates to: PHEAWLEMGRWGGTVLDSSRLLA*PSGCSG
Trigger: ACCACTGCAGCCGCTGGGCCAAGCCAAGAGCCTGGA...ACTGTCTAATACTGTGCCTCCCCAACGTCCCATTTCTAGCCAGGCTTCATGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGTGGCCTCAGCAGCCCTaGCACTTGAGCGGGCCAGAG +
Preference number: 4 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLWPQQP*HLSGPE
Trigger: CTCTGGCCCGCTCAAGTGCCAGGGCTGCTGAGGCCA...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACAGCTGCTCCACGGAGGTaGAGGCTGGGGCCAGGGCCG +
Preference number: 4 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTAAPRR*RLGPGP
Trigger: CGGCCCTGGCCCCAGCCTCCACCTCCGTGGAGCAGC...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp AAACCCACACAGGGTGCCAAGGGTGGCGGCAGGCAGCTCTTCTGGGATGGCCATTTAAATGGATTCCTATaGGGTAGGGCATGGGAGCAC +
Preference number: 4 (lower is better)
Translates to: KPTQGAKGGGRQLFWDGHLNGFL*GRAWEH
Trigger: GTGCTCCCATGCCCTACCTCATAGGAATCCATTTAA...ATGGCCATCCCAGAAGAGCTGCCTGCCGCCACCCTTGGCACCCTGTGTGGGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCCATCTGCAGTGGCTCTaGAGAGAAGTCACCAAGTGG +
Preference number: 4 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSHLQWL*REVTKW
Trigger: CCACTTGGTGACTTCTCTTCAGAGCCACTGCAGATG...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AAACCCACACAGGGTGCCAAGGGTGGCGGCAGGCAGCTCTTCTGGGATGGCCATTCATTTGGGAGGCTCTaGAGGTCATCAAAAGGGGTT +
Preference number: 4 (lower is better)
Translates to: KPTQGAKGGGRQLFWDGHSFGRL*RSSKGV
Trigger: AACCCCTTTTGATGACCTCCAGAGCCTCCCAAATGA...ATGGCCATCCCAGAAGAGCTGCCTGCCGCCACCCTTGGCACCCTGTGTGGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp TGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTTGCTGACCATCATGGTCTTTGGCAGTaGATCTTCTGCAGAGGACAC +
Preference number: 4 (lower is better)
Translates to: CWCSQPLEELAGAGFADHHGLWQ*IFCRGH
Trigger: GTGTCCTCTGCAGAAGATCCACTGCCAAAGACCATG...ATGGTCAGCAAACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp TGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTTGCTGACCATGGATGGCATGGTCTTTaGCAGTGGATCTTCTGCAGA +
Preference number: 4 (lower is better)
Translates to: CWCSQPLEELAGAGFADHGWHGL*QWIFCR
Trigger: TCTGCAGAAGATCCACTGCCAAAGACCATGCCATCC...ATGGTCAGCAAACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AAACCCACACAGGGTGCCAAGGGTGGCGGCAGGCAGCTCTTCTGGGATGGCCATGTAATCAAAGCTCCCTaGCTGTTCCCGCAAGTCTTT +
Preference number: 4 (lower is better)
Translates to: KPTQGAKGGGRQLFWDGHVIKAP*LFPQVF
Trigger: AAAGACTTGCGGGAACAGCCAGGGAGCTTTGATTAC...ATGGCCATCCCAGAAGAGCTGCCTGCCGCCACCCTTGGCACCCTGTGTGGGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp CCCCATGAAGCCTGGCTAGAAATGGGACGTTGGGGAGGCACAGTATTAGACAGTATGCCCTCCTGGTTCTaGGGTCTGAGAGGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: PHEAWLEMGRWGGTVLDSMPSWF*GLRGRA
Trigger: AGCCCTGCCTCTCAGACCCCAGAACCAGGAGGGCAT...ACTGTCTAATACTGTGCCTCCCCAACGTCCCATTTCTAGCCAGGCTTCATGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp TCTTATAAGTTAGAGTTGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCAGAGAAGTCACCAAGTaGGCCGCCAGCAGCCTGGAG +
Preference number: 4 (lower is better)
Translates to: SYKLELLVFPTPGRAGWGREVTK*AASSLE
Trigger: CTCCAGGCTGCTGGCGGCCCACTTGGTGACTTCTCT...GCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAACTTATAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 72 bp CCTCCCTCCCTTTGTCTGTGGCAGGAAGCTTGTCCTTaGAGTTGGAATCTGGGTCACTGCTGCCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: PPSLCLWQEACP*SWNLGHCCPAL
Trigger: CAGAGCTGGGCAGCAGTGACCCAGATTCCAACTCAAAGGACAAGCTTCCTGCCACAGACAAAGGGAGGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 72 bp ACAGATGTCCTCCTGCCTTCCACAGTGATGTTGCTCTaGGGTCTCCTGACGACATGTGGACGAGGAGGCCGT +
Preference number: 4 (lower is better)
Translates to: TDVLLPSTVMLL*GLLTTCGRGGR
Trigger: ACGGCCTCCTCGTCCACATGTCGTCAGGAGACCCAAGAGCAACATCACTGTGGAAGGCAGGAGGACATCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
CDS-3UTR TCA 90 bp ACGCTCAGAGGCCACGTGTATCTTCACTCCATGGGGGAACCTGGGGAGCCCTGGAGAAGTTCATTCCACTaGCTTTCCTGTCGTTTCGTC +
Preference number: 4 (lower is better)
Translates to: TLRGHVYLHSMGEPGEPWRSSFH*LSCRFV
Trigger: GACGAAACGACAGGAAAGTCAGTGGAATGAACTTCT...CCAGGGCTCCCCAGGTTCCCCCATGGAGTGAAGATACACGTGGCCTCTGAGCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGGTGGTGGAGGCACGATaGCCAGCTCAGGGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLVVEAR*PAQGSF
Trigger: GAAAGACCCCTGAGCTGGGCATCGTGCCTCCACCAC...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp TCTTATAAGTTAGAGTTGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCGATGAATGGGGTGGCTaGACTGGGGGTAGCAGGATG +
Preference number: 4 (lower is better)
Translates to: SYKLELLVFPTPGRAGWGDEWGG*TGGSRM
Trigger: CATCCTGCTACCCCCAGTGCAGCCACCCCATTCATC...GCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAACTTATAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGAAGTTCTGGCCAACTTaGCTAACTGTGAGGCTGTCC +
Preference number: 4 (lower is better)
Translates to: DLGSGISALSRSWREWGGKFWPT*LTVRLS
Trigger: GGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTT...CCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp ACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCTACAGAAGCAGCTCTTaGCTCCTGAAGATAAGCGGC +
Preference number: 4 (lower is better)
Translates to: TWAQEFLRCREAGESGEGYRSSS*LLKISG
Trigger: GCCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTA...GCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AAACCCACACAGGGTGCCAAGGGTGGCGGCAGGCAGCTCTTCTGGGATGGCCATTATTCTCAGGTATGCTaGGAAGCTCTCTGCTATCAG +
Preference number: 4 (lower is better)
Translates to: KPTQGAKGGGRQLFWDGHYSQVC*EALCYQ
Trigger: CTGATAGCAGAGAGCTTCCCAGCATACCTGAGAATA...ATGGCCATCCCAGAAGAGCTGCCTGCCGCCACCCTTGGCACCCTGTGTGGGTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGCGAAGTCTGGGGTCCTaGGTCTCTGCCTGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLRSLGS*VSACGD
Trigger: ATCCCCACAGGCAGAGACCCAGGACCCCAGACTTCG...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGGGTGGGTGTCACTGTTaGGGGGAAGCTGAGCTGAGG +
Preference number: 4 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLGGCHC*GEAELR
Trigger: CCTCAGCTCAGCTTCCCCCCAACAGTGACACCCACC...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 72 bp CCCAGCAAAGGAGGAGAGCTGGGCTTGAAAGCAGCCTaGAGCTTCTTGACTCCTCTTGGGCTATGGGAGGAT +
Preference number: 4 (lower is better)
Translates to: PSKGGELGLKAA*SFLTPLGLWED
Trigger: ATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCTCAAGGCTGCTTTCAAGCCCAGCTCTCCTCCTTTGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 72 bp CTCCCTTTGTCTGTGGCAGGAAGCTTGTCCTTTGAGTaGGAATCTGGGTCACTGCTGCCCAGCTCTGCCCAT +
Preference number: 4 (lower is better)
Translates to: LPLSVAGSLSFE*ESGSLLPSSAH
Trigger: ATGGGCAGAGCTGGGCAGCAGTGACCCAGATTCCAACTCAAAGGACAAGCTTCCTGCCACAGACAAAGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp TCTTATAAGTTAGAGTTGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCCTGCACCTCAGGATCTaGAAGAGTGCCACCTGTCCT +
Preference number: 4 (lower is better)
Translates to: SYKLELLVFPTPGRAGWGLHLRI*KSATCP
Trigger: AGGACAGGTGGCACTCTTTCAGATCCTGAGGTGCAG...GCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAACTTATAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCAGTAAGAATGCACACTaGGGTGAACAGACACTCCAG +
Preference number: 4 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSSKNAH*GEQTLQ
Trigger: CTGGAGTGTCTGTTCACCTCAGTGTGCATTCTTACT...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp ACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCCGAGGGCCATGTTCCTaGCCTTCTCCATTAAACTTA +
Preference number: 4 (lower is better)
Translates to: TWAQEFLRCREAGESGEGRGPCS*PSPLNL
Trigger: TAAGTTTAATGGAGAAGGTCAGGAACATGGCCCTCG...GCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCACTGTGGACAGCCACTaGTGGTACAGTTTATCACTG +
Preference number: 4 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSTVDSH*WYSLSL
Trigger: CAGTGATAAACTGTACCATCAGTGGCTGTCCACAGT...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp TCTTATAAGTTAGAGTTGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCATGGCCATGTCGTCCTaGCCCAGACTCCAGAGCTTA +
Preference number: 4 (lower is better)
Translates to: SYKLELLVFPTPGRAGWGMAMSS*PRLQSL
Trigger: TAAGCTCTGGAGTCTGGGTCAGGACGACATGGCCAT...GCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAACTTATAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AAAGCTGTGCTTACACAGGTTGTTACTGACATCTGCCCTGTGGGGTGGGGCCCATTTCAATGTCCGGTATaGCTGTGGCTGCTCAGGGCT +
Preference number: 4 (lower is better)
Translates to: KAVLTQVVTDICPVGWGPFQCPV*LWLLRA
Trigger: AGCCCTGAGCAGCCACAGCCATACCGGACATTGAAA...TGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCACAGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 72 bp GGAGGAGAGCTGGGCTTGAAAGCAGCCTTGAGCTTCTaGACTCCTCTTGGGCTATGGGAGGATAGGATACAG +
Preference number: 4 (lower is better)
Translates to: GGELGLKAALSF*TPLGLWEDRIQ
Trigger: CTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCTCAAGGCTGCTTTCAAGCCCAGCTCTCCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 72 bp CTTGAGACAGATGTCCTCCTGCCTTCCACAGTGATGTaGCTCTTGGGTCTCCTGACGACATGTGGACGAGGA +
Preference number: 4 (lower is better)
Translates to: LETDVLLPSTVM*LLGLLTTCGRG
Trigger: TCCTCGTCCACATGTCGTCAGGAGACCCAAGAGCAACATCACTGTGGAAGGCAGGAGGACATCTGTCTCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
CDS-3UTR TCA 90 bp CCCATCACCTGTGGTTGTAGAGACCTTCTTCAGCCTGTTCTTCAGGGAGGAGATCTGCACCTCAGGATCTaGAAGAGTGCCACCTGTCCT +
Preference number: 4 (lower is better)
Translates to: PITCGCRDLLQPVLQGGDLHLRI*KSATCP
Trigger: AGGACAGGTGGCACTCTTTCAGATCCTGAGGTGCAG...ATCTCCTCCCTGAAGAACAGGCTGAAGAAGGTCTCTACAACCACAGGTGATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150896.8
CDS-3UTR TCA 90 bp ACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCATGGGACAAAGGGATTaGGTGGTGTCTGTACAAAAG +
Preference number: 4 (lower is better)
Translates to: TWAQEFLRCREAGESGEGMGQRD*VVSVQK
Trigger: CTTTTGTACAGACACCACTCAATCCCTTTGTCCCAT...GCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACAAGCAGCCCTGGCACTTaGGCGGGCCAGAGGCAATGT +
Preference number: 4 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTSSPGT*AGQRQC
Trigger: ACATTGCCTCTGGCCCGCTCAAGTGCCAGGGCTGCT...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCTCCGTGATGTCCTTTTaGTTCAAGCGGTTTTTCACC +
Preference number: 4 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSSVMSF*FKRFFT
Trigger: GGTGAAAAACCGCTTGAAGCAAAAGGACATCACGGA...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGAGAGCTGCAACTGTGTaGCATTCTGTAGGAACTGTT +
Preference number: 4 (lower is better)
Translates to: DLGSGISALSRSWREWGGRAATV*HSVGTV
Trigger: AACAGTTCCTACAGAATGCCACACAGTTGCAGCTCT...CCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp ACGCTCAGAGGCCACGTGTATCTTCACTCCATGGGGGAACCTGGGGAGCCCTGGGACAGTCTTCATGGCTaGGTTAGCTTTTGTTTTTAC +
Preference number: 4 (lower is better)
Translates to: TLRGHVYLHSMGEPGEPWDSLHG*VSFCFY
Trigger: GTAAAAACAAAAGCTAACCCAGCCATGAAGACTGTC...CCAGGGCTCCCCAGGTTCCCCCATGGAGTGAAGATACACGTGGCCTCTGAGCGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGTTATGGAGGGCTTGCTaGGGATGGCCATGTCGTCCT +
Preference number: 4 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLLWRAC*GWPCRP
Trigger: AGGACGACATGGCCATCCCCAGCAAGCCCTCCATAA...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp TCTTATAAGTTAGAGTTGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCGGTCTTTCTGCCTTGTaGCCTGGGAATGGTGATGCT +
Preference number: 4 (lower is better)
Translates to: SYKLELLVFPTPGRAGWGGLSAL*PGNGDA
Trigger: AGCATCACCATTCCCAGGCCACAAGGCAGAAAGACC...GCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAACTTATAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp CCCCATGAAGCCTGGCTAGAAATGGGACGTTGGGGAGGCACAGTATTAGACAGTAGTGTGGGCACCCATTaGGATCTGGCCAAAGAGGTT +
Preference number: 4 (lower is better)
Translates to: PHEAWLEMGRWGGTVLDSSVGTH*DLAKEV
Trigger: AACCTCTTTGGCCAGATCCCAATGGGTGCCCACACT...ACTGTCTAATACTGTGCCTCCCCAACGTCCCATTTCTAGCCAGGCTTCATGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGGGCTCACATCTTGCTTaGTTTTTCGCAGCAAATCCT +
Preference number: 4 (lower is better)
Translates to: DLGSGISALSRSWREWGGGSHLA*FFAANP
Trigger: AGGATTTGCTGCGAAAAACCAAGCAAGATGTGAGCC...CCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp AAGTTAGAGTTGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTCTTGGGCTCACATCTTaGTTGGTTTTTCGCAGCAAA +
Preference number: 4 (lower is better)
Translates to: KLELLVFPTPGRAGWGWVLGLTS*LVFRSK
Trigger: TTTGCTGCGAAAAACCAAGCAAGATGTGAGCCCAAG...AACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAACTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGGTCACTGTAGTCCTCTaGGAATTGCCTCTGCACCTC +
Preference number: 4 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLVTVVL*ELPLHL
Trigger: GAGGTGCAGAGGCAATTCCCAGAGGACTACAGTGAC...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp TGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTTGCTGACCATAGTGATGGGTTCTTCTaGCTCAATTTTCAGTGCATT +
Preference number: 4 (lower is better)
Translates to: CWCSQPLEELAGAGFADHSDGFF*LNFQCI
Trigger: AATGCACTGAAAATTGAGCCAGAAGAACCCATCACT...ATGGTCAGCAAACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AAAGCTGTGCTTACACAGGTTGTTACTGACATCTGCCCTGTGGGGTGGGGCCCAAAAGTGGACTGTGATTaGTCTCCGGTCTTCTCGAAG +
Preference number: 4 (lower is better)
Translates to: KAVLTQVVTDICPVGWGPKVDCD*SPVFSK
Trigger: CTTCGAGAAGACCGGAGACCAATCACAGTCCACTTT...TGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCACAGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACAAGGGCTTGCTGGGGATaGCCATGTCGTCCTGACCCA +
Preference number: 4 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTRACWG*PCRPDP
Trigger: TGGGTCAGGACGACATGGCCATCCCCAGCAAGCCCT...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACACTCAGGATGCCCTCCTaGTTCTGGGGTCTGAGAGGC +
Preference number: 4 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTLRMPS*FWGLRG
Trigger: GCCTCTCAGACCCCAGAACCAGGAGGGCATCCTGAG...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR TCA 90 bp AGTTGGTGGTTAGGTGAAGACTCAGGAAAGAGTATATTGCTAGAGAGGTTTGGAGTGGCCTGGGAATGGTaGTGCTGCCCGGAGTTGGGA +
Preference number: 4 (lower is better)
Translates to: SWWLGEDSGKSILLERFGVAWEW*CCPELG
Trigger: TCCCAACTCCGGGCAGCATCACCATTCCCAGGCCAC...TCCAAACCTCTCTAGCAATATACTCTTTCCTGAGTCTTCACCTAACCACCAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp CCCCATGAAGCCTGGCTAGAAATGGGACGTTGGGGAGGCACAGTATTAGACAGTTCTGGGAATTGCCTCTaGACCTCAGGATCTGAAAGA +
Preference number: 4 (lower is better)
Translates to: PHEAWLEMGRWGGTVLDSSGNCL*TSGSER
Trigger: TCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCAGA...ACTGTCTAATACTGTGCCTCCCCAACGTCCCATTTCTAGCCAGGCTTCATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp TCTTATAAGTTAGAGTTGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCCGGCCATCGATAAACTaGTTGAAGAGCTGCAACTGT +
Preference number: 4 (lower is better)
Translates to: SYKLELLVFPTPGRAGWGRPSIN*LKSCNC
Trigger: ACAGTTGCAGCTCTTCAAGCAGTTTATCGATGGCCG...GCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAACTTATAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACAGCTCAGGGGTCTTTCTaGCTTGTGGCCTGGGAATGG +
Preference number: 4 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTAQGSF*LVAWEW
Trigger: CCATTCCCAGGCCACAAGGCAGAAAGACCCCTGAGC...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GCGTTCATACAGCATGCTGGCGTACAGATGCAACATGTTGTTCACATCCACAGCGTCACTGTAGTCCTCTaGGAATTGCCTCTGCACCTC +
Preference number: 4 (lower is better)
Translates to: AFIQHAGVQMQHVVHIHSVTVVL*ELPLHL
Trigger: GAGGTGCAGAGGCAATTCCCAGAGGACTACAGTGAC...GCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAACGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150896.8
CDS-3UTR CCA 90 bp AAAGCTGTGCTTACACAGGTTGTTACTGACATCTGCCCTGTGGGGTGGGGCCCACCAGAGCTTAGTATATaGATGAGCAAGCTTCAAGGC +
Preference number: 4 (lower is better)
Translates to: KAVLTQVVTDICPVGWGPPELSI*MSKLQG
Trigger: GCCTTGAAGCTTGCTCATCCATATACTAAGCTCTGG...TGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCACAGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 72 bp CTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTaGACATATAGTGCAAAACCCACACAGGGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: LGLWEDRIQLVQ*TYSAKPTQGAK
Trigger: CTTGGCACCCTGTGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 72 bp AGGCTCTGGAGGTCATCAAAAGGGGTTTCCAGGGTGTaGGTGTCCACGTTCAAGATCACAACATCATCGAGG +
Preference number: 4 (lower is better)
Translates to: RLWRSSKGVSRV*VSTFKITTSSR
Trigger: CCTCGATGATGTTGTGATCTTGAACGTGGACACCAACACCCTGGAAACCCCTTTTGATGACCTCCAGAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000150896.8
CDS-3UTR GCA 90 bp ATCATTTGGGAGGCTCTGGAGGTCATCAAAAGGGGTTTCCAGGGTGTTGGTGTCTCTGGGAATTGCCTCTaGACCTCAGGATCTGAAAGA +
Preference number: 4 (lower is better)
Translates to: IIWEALEVIKRGFQGVGVSGNCL*TSGSER
Trigger: TCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCAGA...GACACCAACACCCTGGAAACCCCTTTTGATGACCTCCAGAGCCTCCCAAATGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150896.8
CDS-3UTR GCA 90 bp CCCCATGAAGCCTGGCTAGAAATGGGACGTTGGGGAGGCACAGTATTAGACAGTATGCTGGCGTACAGATaGAACATGTTGTTCACATCC +
Preference number: 4 (lower is better)
Translates to: PHEAWLEMGRWGGTVLDSMLAYR*NMLFTS
Trigger: GGATGTGAACAACATGTTGCATCTGTACGCCAGCAT...ACTGTCTAATACTGTGCCTCCCCAACGTCCCATTTCTAGCCAGGCTTCATGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp GAGCACAAATGTGAAGTTCTGGCCAACTTGGCTAACTGTGAGGCTGTCCACATACAACACACTCTCTCCTaGCTGAAAGAGTGCCACCTG +
Preference number: 4 (lower is better)
Translates to: EHKCEVLANLANCEAVHIQHTLS*LKECHL
Trigger: CAGGTGGCACTCTTTCAGGCAGGAGAGAGTGTGTTG...TATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTTGTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142813.2
CDS-3UTR GCA 90 bp GTGAGCACAAATGTGAAGTTCTGGCCAACTTGGCTAACTGTGAGGCTGTCCACATCTGGGAATTGCCTCTaGACCTCAGGATCCAGTTTG +
Preference number: 4 (lower is better)
Translates to: VSTNVKFWPTWLTVRLSTSGNCL*TSGSSL
Trigger: CAAACTGGATCCTGAGGTGCAGAGGCAATTCCCAGA...TGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTTGTGCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142813.2
CDS-3UTR CCA 90 bp GAGCACAAATGTGAAGTTCTGGCCAACTTGGCTAACTGTGAGGCTGTCCACATAGTCACTGTAGTCCTCTaGGAATTGCCTCTGCACCTC +
Preference number: 4 (lower is better)
Translates to: EHKCEVLANLANCEAVHIVTVVL*ELPLHL
Trigger: GAGGTGCAGAGGCAATTCCCAGAGGACTACAGTGAC...TATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTTGTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142813.2
CDS-3UTR CCA 90 bp ACCTGTGGTTGTAGAGACCTTCTTCAGCCTGTTCTTCAGGGAGGAGATCACATCTACAGAAGCAGCTCTTaGCTCCTGAAGATAAGCGGC +
Preference number: 4 (lower is better)
Translates to: TCGCRDLLQPVLQGGDHIYRSSS*LLKISG
Trigger: GCCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTA...GATGTGATCTCCTCCCTGAAGAACAGGCTGAAGAAGGTCTCTACAACCACAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150896.8
CDS-3UTR CCA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACACGTACCTGCCCAAAGTaGACTGTGATTGGTCTCCGG +
Preference number: 4 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTRTCPK*TVIGLR
Trigger: CCGGAGACCAATCACAGTCCACTTTGGGCAGGTACG...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 72 bp AAGACTCAGGTTTGGAGCTTCTCTTATAAGTTAGAGTaGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: KTQVWSFSYKLE*LVFPTPGRAGW
Trigger: CCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAACTTATAAGAGAAGCTCCAAACCTGAGTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGGACAAAGGGATTGAGTaGTGTCTGTACAAAAGGGGT +
Preference number: 4 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLDKGIE*CLYKRG
Trigger: ACCCCTTTTGTACAGACACCACTCAATCCCTTTGTC...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACATCTGGCCAAAGAGGTTaGGCATGGAGAGAGCAGAGA +
Preference number: 4 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTSGQRG*AWREQR
Trigger: TCTCTGCTCTCTCCATGCCCAACCTCTTTGGCCAGA...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
3UTR CAA 72 bp TCCTCCTCAAAGACATCGCTGAAACCTTCACCGGAATaGAGAAGGTCTAGTCGGCCATCGATAAACTGCTTG +
Preference number: 4 (lower is better)
Translates to: SSSKTSLKPSPE*RRSSRPSINCL
Trigger: CAAGCAGTTTATCGATGGCCGACTAGACCTTCTCAATTCCGGTGAAGGTTTCAGCGATGTCTTTGAGGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
3UTR CAA 72 bp TGCAGAGGACACACAGCCGTTCTCCGTGATGTCCTTTaGCTTCAAGCGGTTTTTCACCTCCTTTATTCCCAT +
Preference number: 4 (lower is better)
Translates to: CRGHTAVLRDVL*LQAVFHLLYSH
Trigger: ATGGGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAACGGCTGTGTGTCCTCTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
CDS-3UTR TCA 90 bp CTGACTTTCCTGTCGTTTCGTCGTGTAATCTGCCAAGATGTTAAGGAGCTTATACTGCACCTCAGGATCTaGAAGAGTGCCACCTGTCCT +
Preference number: 4 (lower is better)
Translates to: LTFLSFRRVICQDVKELILHLRI*KSATCP
Trigger: AGGACAGGTGGCACTCTTTCAGATCCTGAGGTGCAG...TATAAGCTCCTTAACATCTTGGCAGATTACACGACGAAACGACAGGAAAGTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143095.8
CDS-3UTR TCA 90 bp GAGCACAAATGTGAAGTTCTGGCCAACTTGGCTAACTGTGAGGCTGTCCACATAGATCCAGTTTGGAGATaGCAGAAAAGCAAGCCATGG +
Preference number: 4 (lower is better)
Translates to: EHKCEVLANLANCEAVHIDPVWR*QKSKPW
Trigger: CCATGGCTTGCTTTTCTGTCATCTCCAAACTGGATC...TATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTTGTGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142813.2
CDS-3UTR GCA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACAGGCGTTCATACAGCATaGTGGCGTACAGATGCAACA +
Preference number: 4 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTGVHTA*WRTDAT
Trigger: TGTTGCATCTGTACGCCAGCATGCTGTATGAACGCC...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp TGTGCAGAGTTTCAAGAAGTTCATTCCACTGACTTTCCTGTCGTTTCGTCGTGTGTCACTGTAGTCCTCTaGGAATTGCCTCTGCACCTC +
Preference number: 4 (lower is better)
Translates to: CAEFQEVHSTDFPVVSSCVTVVL*ELPLHL
Trigger: GAGGTGCAGAGGCAATTCCCAGAGGACTACAGTGAC...ACACGACGAAACGACAGGAAAGTCAGTGGAATGAACTTCTTGAAACTCTGCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143095.8
CDS-3UTR CCA 90 bp TACAGCATGCTGGCGTACAGATGCAACATGTTGTTCACATCCACAGCCACAAAAAAGTTCTGGCCAACTTaGCTAACTGTGAGGCTGTCC +
Preference number: 4 (lower is better)
Translates to: YSMLAYRCNMLFTSTATKKFWPT*LTVRLS
Trigger: GGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTT...TTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTA
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000150896.8
CDS-3UTR TCA 90 bp GTTCTCCGTGATGTCCTTTTGCTTCAAGCGGTTTTTCACCTCCTTTATTCCCATGTCTGTAGAACTTCCTaGAAGAGTGCCACCTGTCCT +
Preference number: 4 (lower is better)
Translates to: VLRDVLLLQAVFHLLYSHVCRTS*KSATCP
Trigger: AGGACAGGTGGCACTCTTTCAGGAAGTTCTACAGAC...ATGGGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
CDS-3UTR GCA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGTTTCGTCGTGTAATCTaGCAAGATGTTAAGGAGCTT +
Preference number: 4 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLFRRVI*QDVKEL
Trigger: AAGCTCCTTAACATCTTGGCAGATTACACGACGAAA...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GGGAGGAGATCACATCATTTGGGAGGCTCTGGAGGTCATCAAAAGGGGTTTCCATTCAAATGTAGTCTCTaGGTTTTGCTTGATCCTGGA +
Preference number: 4 (lower is better)
Translates to: GRRSHHLGGSGGHQKGFPFKCSL*VLLDPG
Trigger: TCCAGGATCAAGCAAAACCCAGAGACTACATTTGAA...TGGAAACCCCTTTTGATGACCTCCAGAGCCTCCCAAATGATGTGATCTCCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000150896.8
3UTR CAA 72 bp GCTCCTGAAGATAAGCGGCAGAACCCGAATCTCTGTTaGCTGTCAATGTCAGTGAGCACAAATGTGAAGTTC +
Preference number: 4 (lower is better)
Translates to: APEDKRQNPNLC*LSMSVSTNVKF
Trigger: GAACTTCACATTTGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000143095.8
CDS-3UTR TCA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACAAGCTTAGTATATGGATaGGCAAGCTTCAAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTSLVYG*ASFKAA
Trigger: TGCAGCCTTGAAGCTTGCTCATCCATATACTAAGCT...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR GCA 90 bp GGGAAGTCTGTGCAGAGTTTCAAGAAGTTCATTCCACTGACTTTCCTGTCGTTTTCTGGGAATTGCCTCTaGACCTCAGGATCTGAAAGA +
Preference number: 4 (lower is better)
Translates to: GKSVQSFKKFIPLTFLSFSGNCL*TSGSER
Trigger: TCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCAGA...AAACGACAGGAAAGTCAGTGGAATGAACTTCTTGAAACTCTGCACAGACTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143095.8
CDS-3UTR CCA 90 bp TGGAGGTCATCAAAAGGGGTTTCCAGGGTGTTGGTGTCCACGTTCAAGATCACATTCAAATGTAGTCTCTaGGTTTTGCTTGATCCTGGA +
Preference number: 4 (lower is better)
Translates to: WRSSKGVSRVLVSTFKITFKCSL*VLLDPG
Trigger: TCCAGGATCAAGCAAAACCCAGAGACTACATTTGAA...TGTGATCTTGAACGTGGACACCAACACCCTGGAAACCCCTTTTGATGACCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000150896.8
CDS-3UTR CCA 90 bp AGTTGGTGGTTAGGTGAAGACTCAGGAAAGAGTATATTGCTAGAGAGGTTTGGAGGGTTTCCAGGGTGTTaGTGTCCACGTTCAAGATCA +
Preference number: 4 (lower is better)
Translates to: SWWLGEDSGKSILLERFGGFPGC*CPRSRS
Trigger: TGATCTTGAACGTGGACACCAACACCCTGGAAACCC...TCCAAACCTCTCTAGCAATATACTCTTTCCTGAGTCTTCACCTAACCACCAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GAGCACAAATGTGAAGTTCTGGCCAACTTGGCTAACTGTGAGGCTGTCCACATACAGAAAAGCAAGCCATaGCAAACGATCTTTGTTCTG +
Preference number: 4 (lower is better)
Translates to: EHKCEVLANLANCEAVHIQKSKP*QTIFVL
Trigger: CAGAACAAAGATCGTTTGCCATGGCTTGCTTTTCTG...TATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTTGTGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142813.2
CDS-3UTR GCA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACATTCTATTCTCAGGTATaGTGGGAAGCTCTCTGCTAT +
Preference number: 4 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTFYSQV*WEALCY
Trigger: ATAGCAGAGAGCTTCCCAGCATACCTGAGAATAGAA...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CCA 90 bp GAAGTTCTGGCCAACTTGGCTAACTGTGAGGCTGTCCACATAGAAGGGAAAACATTCAAATGTAGTCTCTaGGTTTTGCTTGATCCTGGA +
Preference number: 4 (lower is better)
Translates to: EVLANLANCEAVHIEGKTFKCSL*VLLDPG
Trigger: TCCAGGATCAAGCAAAACCCAGAGACTACATTTGAA...TGTTTTCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142813.2
3UTR CAA 72 bp CGTTCATACAGCATGCTGGCGTACAGATGCAACATGTaGTTCACATCCACAGCCACAAAATATTCTGTCAGA +
Preference number: 4 (lower is better)
Translates to: RSYSMLAYRCNM*FTSTATKYSVR
Trigger: TCTGACAGAATATTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140552.8
CDS-3UTR CCA 90 bp TCTCTGTTTGCTGTCAATGTCAGTGAGCACAAATGTGAAGTTCTGGCCAACTTGTTCAAATGTAGTCTCTaGGTTTTGCTTGATCCTGGA +
Preference number: 4 (lower is better)
Translates to: SLFAVNVSEHKCEVLANLFKCSL*VLLDPG
Trigger: TCCAGGATCAAGCAAAACCCAGAGACTACATTTGAA...CAAGTTGGCCAGAACTTCACATTTGTGCTCACTGACATTGACAGCAAACAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140552.8
ENSMUST00000143095.8
CDS-3UTR CCA 90 bp AGTTGGTGGTTAGGTGAAGACTCAGGAAAGAGTATATTGCTAGAGAGGTTTGGATTCAAATGTAGTCTCTaGGTTTTGCTTGATCCTGGA +
Preference number: 4 (lower is better)
Translates to: SWWLGEDSGKSILLERFGFKCSL*VLLDPG
Trigger: TCCAGGATCAAGCAAAACCCAGAGACTACATTTGAA...TCCAAACCTCTCTAGCAATATACTCTTTCCTGAGTCTTCACCTAACCACCAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp GGAGGGGGCAGAGTCCCTTTGCCCCATGAAGCCTGGCTAGAAATGGGACGTTGGCTCCAGGCTCTTGGCTaGGCCCAGCGGCTGCAGTGG +
Preference number: 5 (lower is better)
Translates to: GGGRVPLPHEAWLEMGRWLQALG*AQRLQW
Trigger: CCACTGCAGCCGCTGGGCCAAGCCAAGAGCCTGGAG...CCAACGTCCCATTTCTAGCCAGGCTTCATGGGGCAAAGGGACTCTGCCCCCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCCAGAGGGCTGCGGGGTaGGCTGTAGGCTCTGGGGCG +
Preference number: 5 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSQRAAG*AVGSGA
Trigger: CGCCCCAGAGCCTACAGCCAACCCCGCAGCCCTCTG...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp ACGCTCAGAGGCCACGTGTATCTTCACTCCATGGGGGAACCTGGGGAGCCCTGGAAAGCAGCCTGGGCCTaGAGGAAGGCTCTGGCCACC +
Preference number: 5 (lower is better)
Translates to: TLRGHVYLHSMGEPGEPWKAAWA*RKALAT
Trigger: GGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGCTTT...CCAGGGCTCCCCAGGTTCCCCCATGGAGTGAAGATACACGTGGCCTCTGAGCGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS GCA 90 bp TTGGGGGCCCGGAGATCCTCCAGGCTCTTGGCTTGGCCCAGCGGCTaGAGTGGTGCCTCCACGTCTAGGCTGCTGAAGACATCTTCTAGA +
Preference number: 5 (lower is better)
Translates to: LGARRSSRLLAWPSG*SGASTSRLLKTSSR
Trigger: TCTAGAAGATGTCTTCAGCAGCCTAGACGTGGAGGCACCACTGCAGCCGCTGGGCCAAGCCAAGAGCCTGGAGGATCTCCGGGCCCCCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS GCA 90 bp GACAGGAGGGCTGGACTCAGAGCGGCTTGTCTTTCCCGGTCCATCTaGAGTGGCTCTGAAGAGAAGTCACCAAGTGGGCCGCCAGCAGCC +
Preference number: 5 (lower is better)
Translates to: DRRAGLRAACLSRSI*SGSEEKSPSGPPAA
Trigger: GGCTGCTGGCGGCCCACTTGGTGACTTCTCTTCAGAGCCACTGCAGATGGACCGGGAAAGACAAGCCGCTCTGAGTCCAGCCCTCCTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS CCA 90 bp CCAGTCTCTGGTAATCAAAGCTCCCTGGCTGTTCCCGCAAGTCTTTaGGGGCCCGGAGATCCTCCAGGCTCTTGGCTTGGCCCAGCGGCT +
Preference number: 5 (lower is better)
Translates to: PVSGNQSSLAVPASL*GPGDPPGSWLGPAA
Trigger: AGCCGCTGGGCCAAGCCAAGAGCCTGGAGGATCTCCGGGCCCCCAAAGACTTGCGGGAACAGCCAGGGAGCTTTGATTACCAGAGACTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS TCA 90 bp TGGACTCAGAGCGGCTTGTCTTTCCCGGTCCATCTGCAGTGGCTCTaGAGAGAAGTCACCAAGTGGGCCGCCAGCAGCCTGGAGCTTGGC +
Preference number: 5 (lower is better)
Translates to: WTQSGLSFPVHLQWL*REVTKWAASSLELG
Trigger: GCCAAGCTCCAGGCTGCTGGCGGCCCACTTGGTGACTTCTCTTCAGAGCCACTGCAGATGGACCGGGAAAGACAAGCCGCTCTGAGTCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS CCA 90 bp GGTCTTTCTGCCTTGTGGCCTGGGAATGGTGATGCTGCCCGGAGTTaGGATGGGAGTCTCCTCCTTGATGCTGGGGCTCAGGATGCCCTC +
Preference number: 5 (lower is better)
Translates to: GLSALWPGNGDAARS*DGSLLLDAGAQDAL
Trigger: GAGGGCATCCTGAGCCCCAGCATCAAGGAGGAGACTCCCATCCCAACTCCGGGCAGCATCACCATTCCCAGGCCACAAGGCAGAAAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp GGAGGGGGCAGAGTCCCTTTGCCCCATGAAGCCTGGCTAGAAATGGGACGTTGGGTGGCTGCTCAGGGCTaGAGACAGATGTCCTCCTGC +
Preference number: 5 (lower is better)
Translates to: GGGRVPLPHEAWLEMGRWVAAQG*RQMSSC
Trigger: GCAGGAGGACATCTGTCTCAAGCCCTGAGCAGCCAC...CCAACGTCCCATTTCTAGCCAGGCTTCATGGGGCAAAGGGACTCTGCCCCCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp AAAGCTGTGCTTACACAGGTTGTTACTGACATCTGCCCTGTGGGGTGGGGCCCAGGGCCGGGGCTGGGCTaGGGCTCACATCTTGCTTGG +
Preference number: 5 (lower is better)
Translates to: KAVLTQVVTDICPVGWGPGPGLG*GSHLAW
Trigger: CCAAGCAAGATGTGAGCCCAAGCCCAGCCCCGGCCC...TGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCACAGCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS TCA 90 bp TGGCTTGGCCCAGCGGCTGCAGTGGTGCCTCCACGTCTAGGCTGCTaGAGACATCTTCTAGAAGGTCAATGCTGGCAGCTCGGTCAGGTG +
Preference number: 5 (lower is better)
Translates to: WLGPAAAVVPPRLGC*RHLLEGQCWQLGQV
Trigger: CACCTGACCGAGCTGCCAGCATTGACCTTCTAGAAGATGTCTTCAGCAGCCTAGACGTGGAGGCACCACTGCAGCCGCTGGGCCAAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS-3UTR CAA 90 bp ACGCTCAGAGGCCACGTGTATCTTCACTCCATGGGGGAACCTGGGGAGCCCTGGGTAGTCCTCTGGGAATaGCCTCTGCACCTCAGGATC +
Preference number: 5 (lower is better)
Translates to: TLRGHVYLHSMGEPGEPWVVLWE*PLHLRI
Trigger: GATCCTGAGGTGCAGAGGCAATTCCCAGAGGACTAC...CCAGGGCTCCCCAGGTTCCCCCATGGAGTGAAGATACACGTGGCCTCTGAGCGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp ACGCTCAGAGGCCACGTGTATCTTCACTCCATGGGGGAACCTGGGGAGCCCTGGGGGGTTTCCAGGGTGTaGGTGTCCACGTTCAAGATC +
Preference number: 5 (lower is better)
Translates to: TLRGHVYLHSMGEPGEPWGVSRV*VSTFKI
Trigger: GATCTTGAACGTGGACACCAACACCCTGGAAACCCC...CCAGGGCTCCCCAGGTTCCCCCATGGAGTGAAGATACACGTGGCCTCTGAGCGT
60% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp AAACCCACACAGGGTGCCAAGGGTGGCGGCAGGCAGCTCTTCTGGGATGGCCATGGGATGGCATGGTCTTaGGCAGTGGATCTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: KPTQGAKGGGRQLFWDGHGMAWS*AVDLLQ
Trigger: CTGCAGAAGATCCACTGCCAAAGACCATGCCATCCC...ATGGCCATCCCAGAAGAGCTGCCTGCCGCCACCCTTGGCACCCTGTGTGGGTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS GCA 90 bp CGGTCAGGTGGAGCAGGGGTAGGTCCCCAGGGTTCTCGAACTAGCTaGTCTGGACTCTCGGTCTCATCACCTTCTGCGCTGTCTGATTCT +
Preference number: 5 (lower is better)
Translates to: RSGGAGVGPQGSRTS*SGLSVSSPSALSDS
Trigger: AGAATCAGACAGCGCAGAAGGTGATGAGACCGAGAGTCCAGAGCAGCTAGTTCGAGAACCCTGGGGACCTACCCCTGCTCCACCTGACCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS CCA 90 bp CCTCTCACTTCTGCACAGGTCCAGTCTCTGGTAATCAAAGCTCCCTaGCTGTTCCCGCAAGTCTTTGGGGGCCCGGAGATCCTCCAGGCT +
Preference number: 5 (lower is better)
Translates to: PLTSAQVQSLVIKAP*LFPQVFGGPEILQA
Trigger: AGCCTGGAGGATCTCCGGGCCCCCAAAGACTTGCGGGAACAGCCAGGGAGCTTTGATTACCAGAGACTGGACCTGTGCAGAAGTGAGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS-3UTR CAA 90 bp AAGTTAGAGTTGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTGAGGTTATGGAGGGCTaGCTGGGGATGGCCATGTCG +
Preference number: 5 (lower is better)
Translates to: KLELLVFPTPGRAGWGWVEVMEG*LGMAMS
Trigger: CGACATGGCCATCCCCAGCAAGCCCTCCATAACCTC...AACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCAACTCTAACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS CCA 90 bp GGTCCCAAAAGGCCTGGCTGGTGTAGAGCTCAGGGGCATGGAGGGTaGTACTACTGGCACAGATGGGACAAAGGGATTGAGTGGTGTCTG +
Preference number: 5 (lower is better)
Translates to: GPKRPGWCRAQGHGG*YYWHRWDKGIEWCL
Trigger: CAGACACCACTCAATCCCTTTGTCCCATCTGTGCCAGTAGTACCACCCTCCATGCCCCTGAGCTCTACACCAGCCAGGCCTTTTGGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp GACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCCTTCCACAGTGATGTaGCTCTTGGGTCTCCTGACG +
Preference number: 5 (lower is better)
Translates to: DLGSGISALSRSWREWGGPSTVM*LLGLLT
Trigger: CGTCAGGAGACCCAAGAGCAACATCACTGTGGAAGG...CCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp TGCTTACACAGGTTGTTACTGACATCTGCCCTGTGGGGTGGGGCCCAGCAAAGGATGGGAGTCTCCTCCTaGATGCTGGGGCTCAGGATG +
Preference number: 5 (lower is better)
Translates to: CLHRLLLTSALWGGAQQRMGVSS*MLGLRM
Trigger: CATCCTGAGCCCCAGCATCAAGGAGGAGACTCCCAT...CCTTTGCTGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGCAGCAGCCCTGGCACTaGAGCGGGCCAGAGGCAATG +
Preference number: 5 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLQQPWH*SGPEAM
Trigger: CATTGCCTCTGGCCCGCTCAAGTGCCAGGGCTGCTG...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS TCA 90 bp ATGGCTGTGGCCATTCAAAGGGAGCAGAGAAGAGAAGGCTTTCAGTaGAGCCAGTGCTGGGGGCCTCTTCCCGTCGGCATTCCTCATCAG +
Preference number: 5 (lower is better)
Translates to: MAVAIQREQRREGFQ*SQCWGPLPVGIPHQ
Trigger: CTGATGAGGAATGCCGACGGGAAGAGGCCCCCAGCACTGGCTTCACTGAAAGCCTTCTCTTCTCTGCTCCCTTTGAATGGCCACAGCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136460.2
CDS CCA 90 bp GGGGATGGCCATGTCGTCCTGACCCAGACTCCAGAGCTTAGTATATaGATGAGCAAGCTTCAAGGCTGCAGCCATGCTAAGGCCCCTCTC +
Preference number: 5 (lower is better)
Translates to: GDGHVVLTQTPELSI*MSKLQGCSHAKAPL
Trigger: GAGAGGGGCCTTAGCATGGCTGCAGCCTTGAAGCTTGCTCATCCATATACTAAGCTCTGGAGTCTGGGTCAGGACGACATGGCCATCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS CCA 90 bp AGGCCTGGCTGGTGTAGAGCTCAGGGGCATGGAGGGTGGTACTACTaGCACAGATGGGACAAAGGGATTGAGTGGTGTCTGTACAAAAGG +
Preference number: 5 (lower is better)
Translates to: RPGWCRAQGHGGWYY*HRWDKGIEWCLYKR
Trigger: CCTTTTGTACAGACACCACTCAATCCCTTTGTCCCATCTGTGCCAGTAGTACCACCCTCCATGCCCCTGAGCTCTACACCAGCCAGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp TGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTTGCTGACCATCCATCGATAAACTGCTaGAAGAGCTGCAACTGTGTG +
Preference number: 5 (lower is better)
Translates to: CWCSQPLEELAGAGFADHPSINC*KSCNCV
Trigger: CACACAGTTGCAGCTCTTCAAGCAGTTTATCGATGG...ATGGTCAGCAAACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp TGCTGGTGTTCCCAACCCCTGGAAGAGCTGGCTGGGGCTGGGTTTGCTGACCATCTCCGTGATGTCCTTTaGCTTCAAGCGGTTTTTCAC +
Preference number: 5 (lower is better)
Translates to: CWCSQPLEELAGAGFADHLRDVL*LQAVFH
Trigger: GTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAG...ATGGTCAGCAAACCCAGCCCCAGCCAGCTCTTCCAGGGGTTGGGAACACCAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp AGGTATGAGGGTGGCAGAGAGCTGAGGGCGGCTCCTAAGACTCAGGTTTGGAGCGGGCTCACATCTTGCTaGGTTTTTCGCAGCAAATCC +
Preference number: 5 (lower is better)
Translates to: RYEGGRELRAAPKTQVWSGLTSC*VFRSKS
Trigger: GGATTTGCTGCGAAAAACCAAGCAAGATGTGAGCCC...GCTCCAAACCTGAGTCTTAGGAGCCGCCCTCAGCTCTCTGCCACCCTCATACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS GCA 90 bp CCTTCTGCGCTGTCTGATTCTTTCAATGTCCGGTATGGCTGTGGCTaGTCAGGGCTTGAGACAGATGTCCTCCTGCCTTCCACAGTGATG +
Preference number: 5 (lower is better)
Translates to: PSALSDSFNVRYGCG*SGLETDVLLPSTVM
Trigger: CATCACTGTGGAAGGCAGGAGGACATCTGTCTCAAGCCCTGAGCAGCCACAGCCATACCGGACATTGAAAGAATCAGACAGCGCAGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp ACTTGGGCTCAGGAATTTCTGCGCTGTCGAGAAGCTGGAGAGAGTGGGGAGGGCAACCCGAATCTCTGTTaGCTGTCAATGTCAGTGAGC +
Preference number: 5 (lower is better)
Translates to: TWAQEFLRCREAGESGEGNPNLC*LSMSVS
Trigger: GCTCACTGACATTGACAGCAAACAGAGATTCGGGTT...GCCCTCCCCACTCTCTCCAGCTTCTCGACAGCGCAGAAATTCCTGAGCCCAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS GCA 90 bp ACCCAGACTCCAGAGCTTAGTATATGGATGAGCAAGCTTCAAGGCTaGAGCCATGCTAAGGCCCCTCTCACTTCTGCACAGGTCCAGTCT +
Preference number: 5 (lower is better)
Translates to: TQTPELSIWMSKLQG*SHAKAPLTSAQVQS
Trigger: AGACTGGACCTGTGCAGAAGTGAGAGGGGCCTTAGCATGGCTGCAGCCTTGAAGCTTGCTCATCCATATACTAAGCTCTGGAGTCTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS-3UTR CAA 90 bp TGCTTACACAGGTTGTTACTGACATCTGCCCTGTGGGGTGGGGCCCAGCAAAGGGCATACTCTCCCATGTaGATTTCCTCCTCAAAGACA +
Preference number: 5 (lower is better)
Translates to: CLHRLLLTSALWGGAQQRAYSPM*ISSSKT
Trigger: TGTCTTTGAGGAGGAAATCAACATGGGAGAGTATGC...CCTTTGCTGGGCCCCACCCCACAGGGCAGATGTCAGTAACAACCTGTGTAAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACAAAGTTCTGTGGGACCTaGGGGGACAGCTCTGGGGAG +
Preference number: 5 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTKFCGT*GDSSGE
Trigger: CTCCCCAGAGCTGTCCCCCAAGGTCCCACAGAACTT...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp GAAGTTCTGGCCAACTTGGCTAACTGTGAGGCTGTCCACATAGAAGGGAAAACAGTAGTCCTCTGGGAATaGCCTCTGCACCTCAGGATC +
Preference number: 5 (lower is better)
Translates to: EVLANLANCEAVHIEGKTVVLWE*PLHLRI
Trigger: GATCCTGAGGTGCAGAGGCAATTCCCAGAGGACTAC...TGTTTTCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142813.2
CDS-3UTR CAA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGATACAGAAGCAGCTCTaGGCTCCTGAAGATAAGCGG +
Preference number: 5 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLIQKQL*APEDKR
Trigger: CCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTAT...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp ATCAAAAGGGGTTTCCAGGGTGTTGGTGTCCACGTTCAAGATCACAACATCATCGTAGTCCTCTGGGAATaGCCTCTGCACCTCAGGATC +
Preference number: 5 (lower is better)
Translates to: IKRGFQGVGVHVQDHNIIVVLWE*PLHLRI
Trigger: GATCCTGAGGTGCAGAGGCAATTCCCAGAGGACTAC...GATGATGTTGTGATCTTGAACGTGGACACCAACACCCTGGAAACCCCTTTTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150896.8
CDS-3UTR CAA 90 bp CCCCATGAAGCCTGGCTAGAAATGGGACGTTGGGGAGGCACAGTATTAGACAGTGATGGGACAAAGGGATaGAGTGGTGTCTGTACAAAA +
Preference number: 5 (lower is better)
Translates to: PHEAWLEMGRWGGTVLDSDGTKG*SGVCTK
Trigger: TTTTGTACAGACACCACTCAATCCCTTTGTCCCATC...ACTGTCTAATACTGTGCCTCCCCAACGTCCCATTTCTAGCCAGGCTTCATGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp GGTCATCAAAAGGGGTTTCCAGGGTGTTGGTGTCCACGTTCAAGATCACAACATATACAGAAGCAGCTCTaGGCTCCTGAAGATAAGCGG +
Preference number: 5 (lower is better)
Translates to: GHQKGFPGCWCPRSRSQHIQKQL*APEDKR
Trigger: CCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTAT...ATGTTGTGATCTTGAACGTGGACACCAACACCCTGGAAACCCCTTTTGATGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150896.8
CDS-3UTR CAA 90 bp AGCTTCTTGACTCCTCTTGGGCTATGGGAGGATAGGATACAGCTGGTCCAGTTGTACAGATGCAACATGTaGTTCACATCCACAGCCACA +
Preference number: 5 (lower is better)
Translates to: SFLTPLGLWEDRIQLVQLYRCNM*FTSTAT
Trigger: TGTGGCTGTGGATGTGAACAACATGTTGCATCTGTA...CAACTGGACCAGCTGTATCCTATCCTCCCATAGCCCAAGAGGAGTCAAGAAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS TCA 90 bp AGTCCTCTGGGAATTGCCTCTGCACCTCAGGATCCAGTTTGGAGATaGCAGAAAAGCAAGCCATGGCAAACGATCTTTGTTCTGAAGATC +
Preference number: 5 (lower is better)
Translates to: SPLGIASAPQDPVWR*QKSKPWQTIFVLKI
Trigger: GATCTTCAGAACAAAGATCGTTTGCCATGGCTTGCTTTTCTGTCATCTCCAAACTGGATCCTGAGGTGCAGAGGCAATTCCCAGAGGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142813.2
CDS-3UTR CAA 90 bp CTGACTTTCCTGTCGTTTCGTCGTGTAATCTGCCAAGATGTTAAGGAGCTTATAGTAGTCCTCTGGGAATaGCCTCTGCACCTCAGGATC +
Preference number: 5 (lower is better)
Translates to: LTFLSFRRVICQDVKELIVVLWE*PLHLRI
Trigger: GATCCTGAGGTGCAGAGGCAATTCCCAGAGGACTAC...TATAAGCTCCTTAACATCTTGGCAGATTACACGACGAAACGACAGGAAAGTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143095.8
CDS-3UTR CAA 90 bp CTATGGGAGGATAGGATACAGCTGGTCCAGTTGACATATAGTGCAAAACCCACAGCTTGGGCTCACATCTaGCTTGGTTTTTCGCAGCAA +
Preference number: 5 (lower is better)
Translates to: LWEDRIQLVQLTYSAKPTAWAHI*LGFSQQ
Trigger: TTGCTGCGAAAAACCAAGCAAGATGTGAGCCCAAGC...TGTGGGTTTTGCACTATATGTCAACTGGACCAGCTGTATCCTATCCTCCCATAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS-3UTR CAA 90 bp GAAGTTCTGGCCAACTTGGCTAACTGTGAGGCTGTCCACATAGAAGGGAAAACAACCTCAGGATCCAGTTaGGAGATGACAGAAAAGCAA +
Preference number: 5 (lower is better)
Translates to: EVLANLANCEAVHIEGKTTSGSS*EMTEKQ
Trigger: TTGCTTTTCTGTCATCTCCAAACTGGATCCTGAGGT...TGTTTTCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142813.2
CDS TCA 90 bp TTTGGAGATGACAGAAAAGCAAGCCATGGCAAACGATCTTTGTTCTaGAGATCAGGAATAACTTCTAATACAACACACTCTCTCCTGCCT +
Preference number: 5 (lower is better)
Translates to: FGDDRKASHGKRSLF*RSGITSNTTHSLLP
Trigger: AGGCAGGAGAGAGTGTGTTGTATTAGAAGTTATTCCTGATCTTCAGAACAAAGATCGTTTGCCATGGCTTGCTTTTCTGTCATCTCCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142813.2
CDS CCA 72 bp GTCACCAAGTGGGCCGCCAGCAGCCTGGAGCTTGGCTaGCCGGGCAGTGGGTGGTGGAGGCACGATGCCCAG +
Preference number: 6 (lower is better)
Translates to: VTKWAASSLELG*PGSGWWRHDAQ
Trigger: CTGGGCATCGTGCCTCCACCACCCACTGCCCGGCCAGCCAAGCTCCAGGCTGCTGGCGGCCCACTTGGTGAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS CCA 72 bp GCTGGGCTGGGTGGCTGCAGAAGTTCTGTGGGACCTTaGGGGACAGCTCTGGGGAGCAGCCCTGACAGGAGG +
Preference number: 6 (lower is better)
Translates to: AGLGGCRSSVGP*GTALGSSPDRR
Trigger: CCTCCTGTCAGGGCTGCTCCCCAGAGCTGTCCCCCAAGGTCCCACAGAACTTCTGCAGCCACCCAGCCCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS GCA 72 bp CGGAGATCCTCCAGGCTCTTGGCTTGGCCCAGCGGCTaGAGTGGTGCCTCCACGTCTAGGCTGCTGAAGACA +
Preference number: 6 (lower is better)
Translates to: RRSSRLLAWPSG*SGASTSRLLKT
Trigger: TGTCTTCAGCAGCCTAGACGTGGAGGCACCACTGCAGCCGCTGGGCCAAGCCAAGAGCCTGGAGGATCTCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS CCA 72 bp GTAGGAACAGAGGGCTGCGGGGTTGGCTGTAGGCTCTaGGGCGGTCTGGGAGGCAACAGTGGGGATTCACCA +
Preference number: 6 (lower is better)
Translates to: VGTEGCGVGCRL*GGLGGNSGDSP
Trigger: TGGTGAATCCCCACTGTTGCCTCCCAGACCGCCCCAGAGCCTACAGCCAACCCCGCAGCCCTCTGTTCCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS GCA 72 bp GAGCTGAGGGCTTCTCAGGGGAGGTTATGGAGGGCTTaGTGGGGATGGCCATGTCGTCCTGACCCAGACTCC +
Preference number: 6 (lower is better)
Translates to: ELRASQGRLWRA*WGWPCRPDPDS
Trigger: GGAGTCTGGGTCAGGACGACATGGCCATCCCCAGCAAGCCCTCCATAACCTCCCCTGAGAAGCCCTCAGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS TCA 72 bp GCTCAGGGGTCTTTCTGCCTTGTGGCCTGGGAATGGTaGTGCTGCCCGGAGTTGGGATGGGAGTCTCCTCCT +
Preference number: 6 (lower is better)
Translates to: AQGSFCLVAWEW*CCPELGWESPP
Trigger: AGGAGGAGACTCCCATCCCAACTCCGGGCAGCATCACCATTCCCAGGCCACAAGGCAGAAAGACCCCTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS TCA 72 bp AGCGGCTTGTCTTTCCCGGTCCATCTGCAGTGGCTCTaGAGAGAAGTCACCAAGTGGGCCGCCAGCAGCCTG +
Preference number: 6 (lower is better)
Translates to: SGLSFPVHLQWL*REVTKWAASSL
Trigger: CAGGCTGCTGGCGGCCCACTTGGTGACTTCTCTTCAGAGCCACTGCAGATGGACCGGGAAAGACAAGCCGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS GCA 72 bp GGAGCAGGGGTAGGTCCCCAGGGTTCTCGAACTAGCTaGTCTGGACTCTCGGTCTCATCACCTTCTGCGCTG +
Preference number: 6 (lower is better)
Translates to: GAGVGPQGSRTS*SGLSVSSPSAL
Trigger: CAGCGCAGAAGGTGATGAGACCGAGAGTCCAGAGCAGCTAGTTCGAGAACCCTGGGGACCTACCCCTGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS CCA 72 bp GGTAATCAAAGCTCCCTGGCTGTTCCCGCAAGTCTTTaGGGGCCCGGAGATCCTCCAGGCTCTTGGCTTGGC +
Preference number: 6 (lower is better)
Translates to: GNQSSLAVPASL*GPGDPPGSWLG
Trigger: GCCAAGCCAAGAGCCTGGAGGATCTCCGGGCCCCCAAAGACTTGCGGGAACAGCCAGGGAGCTTTGATTACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS CCA 72 bp CTGAGGGCTTCTCAGGGGAGGTTATGGAGGGCTTGCTaGGGATGGCCATGTCGTCCTGACCCAGACTCCAGA +
Preference number: 6 (lower is better)
Translates to: LRASQGRLWRAC*GWPCRPDPDSR
Trigger: TCTGGAGTCTGGGTCAGGACGACATGGCCATCCCCAGCAAGCCCTCCATAACCTCCCCTGAGAAGCCCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS CCA 72 bp GCCAAGTGGCTGCAGGGGACTAGTGTGGGCACCCATTaGGATCTGGCCAAAGAGGTTGGGCATGGAGAGAGC +
Preference number: 6 (lower is better)
Translates to: AKWLQGTSVGTH*DLAKEVGHGES
Trigger: GCTCTCTCCATGCCCAACCTCTTTGGCCAGATCCCAATGGGTGCCCACACTAGTCCCCTGCAGCCACTTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS TCA 72 bp CCAGCGGCTGCAGTGGTGCCTCCACGTCTAGGCTGCTaGAGACATCTTCTAGAAGGTCAATGCTGGCAGCTC +
Preference number: 6 (lower is better)
Translates to: PAAAVVPPRLGC*RHLLEGQCWQL
Trigger: GAGCTGCCAGCATTGACCTTCTAGAAGATGTCTTCAGCAGCCTAGACGTGGAGGCACCACTGCAGCCGCTGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000136460.2
CDS CCA 72 bp AGGCCTGGCTGGTGTAGAGCTCAGGGGCATGGAGGGTaGTACTACTGGCACAGATGGGACAAAGGGATTGAG +
Preference number: 6 (lower is better)
Translates to: RPGWCRAQGHGG*YYWHRWDKGIE
Trigger: CTCAATCCCTTTGTCCCATCTGTGCCAGTAGTACCACCCTCCATGCCCCTGAGCTCTACACCAGCCAGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS CCA 72 bp TGGTGTAGAGCTCAGGGGCATGGAGGGTGGTACTACTaGCACAGATGGGACAAAGGGATTGAGTGGTGTCTG +
Preference number: 6 (lower is better)
Translates to: WCRAQGHGGWYY*HRWDKGIEWCL
Trigger: CAGACACCACTCAATCCCTTTGTCCCATCTGTGCCAGTAGTACCACCCTCCATGCCCCTGAGCTCTACACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS TCA 72 bp CTCTGGACTCTCGGTCTCATCACCTTCTGCGCTGTCTaGTTCTTTCAATGTCCGGTATGGCTGTGGCTGCTC +
Preference number: 6 (lower is better)
Translates to: LWTLGLITFCAV*FFQCPVWLWLL
Trigger: GAGCAGCCACAGCCATACCGGACATTGAAAGAATCAGACAGCGCAGAAGGTGATGAGACCGAGAGTCCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS GCA 72 bp CTGTCTGATTCTTTCAATGTCCGGTATGGCTGTGGCTaGTCAGGGCTTGAGACAGATGTCCTCCTGCCTTCC +
Preference number: 6 (lower is better)
Translates to: LSDSFNVRYGCG*SGLETDVLLPS
Trigger: GGAAGGCAGGAGGACATCTGTCTCAAGCCCTGAGCAGCCACAGCCATACCGGACATTGAAAGAATCAGACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS CCA 72 bp GCTCAGGGGCATGGAGGGTGGTACTACTGGCACAGATaGGACAAAGGGATTGAGTGGTGTCTGTACAAAAGG +
Preference number: 6 (lower is better)
Translates to: AQGHGGWYYWHR*DKGIEWCLYKR
Trigger: CCTTTTGTACAGACACCACTCAATCCCTTTGTCCCATCTGTGCCAGTAGTACCACCCTCCATGCCCCTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS TCA 72 bp TTTCAATGTCCGGTATGGCTGTGGCTGCTCAGGGCTTaGGACAGATGTCCTCCTGCCTTCCACAGTGATGTT +
Preference number: 6 (lower is better)
Translates to: FQCPVWLWLLRA*DRCPPAFHSDV
Trigger: AACATCACTGTGGAAGGCAGGAGGACATCTGTCTCAAGCCCTGAGCAGCCACAGCCATACCGGACATTGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS TCA 72 bp CTCTGGACTCTCGGTCTCATCACCTTCTGCGCTGTCTaGTTCTTTCAATGTCCGGTATGGCTGTGGCCATTC +
Preference number: 6 (lower is better)
Translates to: LWTLGLITFCAV*FFQCPVWLWPF
Trigger: GAATGGCCACAGCCATACCGGACATTGAAAGAATCAGACAGCGCAGAAGGTGATGAGACCGAGAGTCCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136460.2
CDS CCA 72 bp TGGTACTACTGGCACAGATGGGACAAAGGGATTGAGTaGTGTCTGTACAAAAGGGGTGGGTGTCACTGTTGG +
Preference number: 6 (lower is better)
Translates to: WYYWHRWDKGIE*CLYKRGGCHCW
Trigger: CCAACAGTGACACCCACCCCTTTTGTACAGACACCACTCAATCCCTTTGTCCCATCTGTGCCAGTAGTACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102787.10
CDS CAA 72 bp AATGTCAGTGAGCACAAATGTGAAGTTCTGGCCAACTaGGCTAACTGTGAGGCTGTCCACATAGAAGGGAAA +
Preference number: 6 (lower is better)
Translates to: NVSEHKCEVLAN*ANCEAVHIEGK
Trigger: TTTCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTTGTGCTCACTGACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102787.10
ENSMUST00000150896.8