Pregenerated sensors for DENND10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024993Ensembl transcript IDs: ENSMUST00000025957.9, ENSMUST00000119633.8
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TATGAAAGCATTATGGGCTGGGGGTTTAGTTTAGTGGGAAAGCAATaGCTTGCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAA | + |
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Preference number: 1 (lower is better) Translates to: YESIMGWGFSLVGKQ*LAYARPQVLAPTLQ Trigger: TTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGCAAGGCATTGCTTTCCCACTAAACTAAACCCCCAGCCCATAATGCTTTCATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR TCA 90 bp | ACCATTAAGTTTATGGCTACAGTAAGACTAAATAGGAATGAACAATaGAGGCTAGCATGTGCGATCTGTGTGGCTCCTACCATTAGGACA | + |
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Preference number: 1 (lower is better) Translates to: TIKFMATVRLNRNEQ*RLACAICVAPTIRT Trigger: TGTCCTAATGGTAGGAGCCACACAGATCGCACATGCTAGCCTTCATTGTTCATTCCTATTTAGTCTTACTGTAGCCATAAACTTAATGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR CCA 90 bp | TTTGATTCTCATGTTCCTTTACCAATATATGAAAGCATTATGGGCTaGGGGTTTAGTTTAGTGGGAAAGCAATGCCTTGCATATGCAAGG | + |
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Preference number: 1 (lower is better) Translates to: FDSHVPLPIYESIMG*GFSLVGKQCLAYAR Trigger: CCTTGCATATGCAAGGCATTGCTTTCCCACTAAACTAAACCCCCAGCCCATAATGCTTTCATATATTGGTAAAGGAACATGAGAATCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR GCA 90 bp | CTTGCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAAATAAAAACAGTAATGAAGGCTAGCATGTaGGATCTGTGTGGCTCCTAC | + |
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Preference number: 2 (lower is better) Translates to: LAYARPQVLAPTLQIKTVMKASM*DLCGSY Trigger: GTAGGAGCCACACAGATCGCACATGCTAGCCTTCAT...TACTGTTTTTATTTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGCAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR GCA 90 bp | GTATGTCAAGTCCTCCCTGTTTTTACCCAAGGACAAGAGGGAAAGGCTATTTTTGCCAAATTCCTTTACTaGAGTCACTGGAAGACACTG | + |
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Preference number: 2 (lower is better) Translates to: VCQVLPVFTQGQEGKAIFAKFLY*SHWKTL Trigger: CAGTGTCTTCCAGTGACTGCAGTAAAGGAATTTGGC...AAAAATAGCCTTTCCCTCTTGTCCTTGGGTAAAAACAGGGAGGACTTGACATAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR TCA 90 bp | GTATGTCAAGTCCTCCCTGTTTTTACCCAAGGACAAGAGGGAAAGGCTATTTTTTTGGCCTTGGCAATTTaGTTCTCATGTTCCTTTACC | + |
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Preference number: 2 (lower is better) Translates to: VCQVLPVFTQGQEGKAIFLALAI*FSCSFT Trigger: GGTAAAGGAACATGAGAATCAAATTGCCAAGGCCAA...AAAAATAGCCTTTCCCTCTTGTCCTTGGGTAAAAACAGGGAGGACTTGACATAC 42% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR GCA 90 bp | TTGATTCTCATGTTCCTTTACCAATATATGAAAGCATTATGGGCTGGGGGTTTAATGAAGGCTAGCATGTaGGATCTGTGTGGCTCCTAC | + |
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Preference number: 2 (lower is better) Translates to: LILMFLYQYMKALWAGGLMKASM*DLCGSY Trigger: GTAGGAGCCACACAGATCGCACATGCTAGCCTTCAT...TAAACCCCCAGCCCATAATGCTTTCATATATTGGTAAAGGAACATGAGAATCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR GCA 90 bp | TTGATTCTCATGTTCCTTTACCAATATATGAAAGCATTATGGGCTGGGGGTTTATTAGTGGGAAAGCAATaGCTTGCATATGCAAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: LILMFLYQYMKALWAGGLLVGKQ*LAYARP Trigger: GGGCCTTGCATATGCAAGGCATTGCTTTCCCACTAA...TAAACCCCCAGCCCATAATGCTTTCATATATTGGTAAAGGAACATGAGAATCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR CCA 90 bp | AATAACAGTGTCCTGATGATGTGGCCAAATTCCTTTACTGCAGTCACTGGAAGAAGCACTGGATCAAATTaGCAGGGAGAAAAATCACAA | + |
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Preference number: 2 (lower is better) Translates to: NNSVLMMWPNSFTAVTGRSTGSN*QGEKSQ Trigger: TTGTGATTTTTCTCCCTGCCAATTTGATCCAGTGCT...TCTTCCAGTGACTGCAGTAAAGGAATTTGGCCACATCATCAGGACACTGTTATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR GCA 90 bp | CTTGCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAAATAAAAACAGTAACAATTGTTTTTATGTaGTCTCACCTAAGATCTCAC | + |
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Preference number: 2 (lower is better) Translates to: LAYARPQVLAPTLQIKTVTIVFM*SHLRSH Trigger: GTGAGATCTTAGGTGAGAGCACATAAAAACAATTGT...TACTGTTTTTATTTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGCAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR TCA 90 bp | TTGATTCTCATGTTCCTTTACCAATATATGAAAGCATTATGGGCTGGGGGTTTAAATAGGAATGAACAATaGAGGCTAGCATGTGCGATC | + |
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Preference number: 2 (lower is better) Translates to: LILMFLYQYMKALWAGGLNRNEQ*RLACAI Trigger: GATCGCACATGCTAGCCTTCATTGTTCATTCCTATT...TAAACCCCCAGCCCATAATGCTTTCATATATTGGTAAAGGAACATGAGAATCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR TCA 90 bp | TCATTAGTTGTTAGCTCCAGTAAACAAAGTATGTCAAGTCCTCCCTGTTTTTACTTGGCCTTGGCAATTTaGTTCTCATGTTCCTTTACC | + |
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Preference number: 2 (lower is better) Translates to: SLVVSSSKQSMSSPPCFYLALAI*FSCSFT Trigger: GGTAAAGGAACATGAGAATCAAATTGCCAAGGCCAA...GTAAAAACAGGGAGGACTTGACATACTTTGTTTACTGGAGCTAACAACTAATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR GCA 90 bp | AATAACAGTGTCCTGATGATGTGGCCAAATTCCTTTACTGCAGTCACTGGAAGAACAATTGTTTTTATGTaGTCTCACCTAAGATCTCAC | + |
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Preference number: 2 (lower is better) Translates to: NNSVLMMWPNSFTAVTGRTIVFM*SHLRSH Trigger: GTGAGATCTTAGGTGAGAGCACATAAAAACAATTGT...TCTTCCAGTGACTGCAGTAAAGGAATTTGGCCACATCATCAGGACACTGTTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR CCA 90 bp | GTATGTCAAGTCCTCCCTGTTTTTACCCAAGGACAAGAGGGAAAGGCTATTTTTTATACTGAAGAAAGGTaGCCTTTCATAGTTAATGTG | + |
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Preference number: 2 (lower is better) Translates to: VCQVLPVFTQGQEGKAIFYTEER*PFIVNV Trigger: CACATTAACTATGAAAGGCCACCTTTCTTCAGTATA...AAAAATAGCCTTTCCCTCTTGTCCTTGGGTAAAAACAGGGAGGACTTGACATAC 39% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR CCA 90 bp | TCATTAGTTGTTAGCTCCAGTAAACAAAGTATGTCAAGTCCTCCCTGTTTTTACTATACTGAAGAAAGGTaGCCTTTCATAGTTAATGTG | + |
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Preference number: 2 (lower is better) Translates to: SLVVSSSKQSMSSPPCFYYTEER*PFIVNV Trigger: CACATTAACTATGAAAGGCCACCTTTCTTCAGTATA...GTAAAAACAGGGAGGACTTGACATACTTTGTTTACTGGAGCTAACAACTAATGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR CCA 72 bp | AAATTAAGAGAGGCTAATAACAGTGTCCTGATGATGTaGCCAAATTCCTTTACTGCAGTCACTGGAAGACAC | + |
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Preference number: 3 (lower is better) Translates to: KLREANNSVLMM*PNSFTAVTGRH Trigger: GTGTCTTCCAGTGACTGCAGTAAAGGAATTTGGCCACATCATCAGGACACTGTTATTAGCCTCTCTTAATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR CAA 90 bp | GTATGTCAAGTCCTCCCTGTTTTTACCCAAGGACAAGAGGGAAAGGCTATTTTTGGAGAAAAATCACAATaGTTTTTATGTGCTCTCACC | + |
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Preference number: 3 (lower is better) Translates to: VCQVLPVFTQGQEGKAIFGEKSQ*FLCALT Trigger: GGTGAGAGCACATAAAAACAATTGTGATTTTTCTCC...AAAAATAGCCTTTCCCTCTTGTCCTTGGGTAAAAACAGGGAGGACTTGACATAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 20 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR CAA 90 bp | TCATTAGTTGTTAGCTCCAGTAAACAAAGTATGTCAAGTCCTCCCTGTTTTTACCAGCACTGGATCAAATaGGCAGGGAGAAAAATCACA | + |
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Preference number: 3 (lower is better) Translates to: SLVVSSSKQSMSSPPCFYQHWIK*AGRKIT Trigger: TGTGATTTTTCTCCCTGCCAATTTGATCCAGTGCTG...GTAAAAACAGGGAGGACTTGACATACTTTGTTTACTGGAGCTAACAACTAATGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR GCA 72 bp | ACATTTTTGCAAATATGTTTCCTGGTAAGGTTTGAATaGTCTGCAACTATACTGAAGAAAGGTGGCCTTTCA | + |
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Preference number: 3 (lower is better) Translates to: TFLQICFLVRFE*SATILKKGGLS Trigger: TGAAAGGCCACCTTTCTTCAGTATAGTTGCAGAGCATTCAAACCTTACCAGGAAACATATTTGCAAAAATGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| 3UTR-3UTR CAA 90 bp | TTGAATGACCTTCTAGACAATTCTGCAGAAAACATAGCAGTTAGGCTCAAAAAGGGAGAAAAATCACAATaGTTTTTATGTGCTCTCACC | + |
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Preference number: 3 (lower is better) Translates to: LNDLLDNSAENIAVRLKKGEKSQ*FLCALT Trigger: GGTGAGAGCACATAAAAACAATTGTGATTTTTCTCC...CTTTTTGAGCCTAACTGCTATGTTTTCTGCAGAATTGTCTAGAAGGTCATTCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | GCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAAATAAAAACAGTAAAGCAGGCAGAGTCCTGGTaGACTCCTGGACAGCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: AYARPQVLAPTLQIKTVKQAESW*TPGQLL Trigger: TAGAAGCTGTCCAGGAGTTCACCAGGACTCTGCCTG...CTTTACTGTTTTTATTTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | AATAACAGTGTCCTGATGATGTGGCCAAATTCCTTTACTGCAGTCACTGGAAGACAGGCAGAGTCCTGGTaGACTCCTGGACAGCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: NNSVLMMWPNSFTAVTGRQAESW*TPGQLL Trigger: TAGAAGCTGTCCAGGAGTTCACCAGGACTCTGCCTG...TCTTCCAGTGACTGCAGTAAAGGAATTTGGCCACATCATCAGGACACTGTTATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR CCA 90 bp | CTTGCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAAATAAAAACAGTAGGCCTCTTTTGCAAGTaGAGCGATGGTGATCTCACT | + |
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Preference number: 4 (lower is better) Translates to: LAYARPQVLAPTLQIKTVGLFCK*SDGDLT Trigger: AGTGAGATCACCATCGCTCCACTTGCAAAAGAGGCC...TACTGTTTTTATTTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGCAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR CCA 90 bp | GCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAAATAAAAACAGTAAAGGTTTGCCCATCGTCATaGCCTCTTTTGCAAGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: AYARPQVLAPTLQIKTVKVCPSS*PLLQVE Trigger: CTCCACTTGCAAAAGAGGCCATGACGATGGGCAAAC...CTTTACTGTTTTTATTTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | CTTGCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAAATAAAAACAGTAATCATCAGACACTTCTaGGAATGGTGCCAGGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: LAYARPQVLAPTLQIKTVIIRHF*EWCQVS Trigger: ACTCACCTGGCACCATTCTCAGAAGTGTCTGATGAT...TACTGTTTTTATTTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGCAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR GCA 90 bp | AATAACAGTGTCCTGATGATGTGGCCAAATTCCTTTACTGCAGTCACTGGAAGACGTCATGGCCTCTTTTaGAAGTGGAGCGATGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: NNSVLMMWPNSFTAVTGRRHGLF*KWSDGD Trigger: ATCACCATCGCTCCACTTGCAAAAGAGGCCATGACG...TCTTCCAGTGACTGCAGTAAAGGAATTTGGCCACATCATCAGGACACTGTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR CCA 90 bp | AATAACAGTGTCCTGATGATGTGGCCAAATTCCTTTACTGCAGTCACTGGAAGAGGCCTCTTTTGCAAGTaGAGCGATGGTGATCTCACT | + |
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Preference number: 4 (lower is better) Translates to: NNSVLMMWPNSFTAVTGRGLFCK*SDGDLT Trigger: AGTGAGATCACCATCGCTCCACTTGCAAAAGAGGCC...TCTTCCAGTGACTGCAGTAAAGGAATTTGGCCACATCATCAGGACACTGTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | GCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAAATAAAAACAGTAAAGGAGATACAATGTCTTTaGTGGAGCCAGCAAGGTATG | + |
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Preference number: 4 (lower is better) Translates to: AYARPQVLAPTLQIKTVKEIQCL*WSQQGM Trigger: CATACCTTGCTGGCTCCATCAAAGACATTGTATCTC...CTTTACTGTTTTTATTTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | CTTGCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAAATAAAAACAGTAGAGATACAATGTCTTTaGTGGAGCCAGCAAGGTATG | + |
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Preference number: 4 (lower is better) Translates to: LAYARPQVLAPTLQIKTVEIQCL*WSQQGM Trigger: CATACCTTGCTGGCTCCATCAAAGACATTGTATCTC...TACTGTTTTTATTTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGCAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR GCA 90 bp | GTATGTCAAGTCCTCCCTGTTTTTACCCAAGGACAAGAGGGAAAGGCTATTTTTCAGCAATGTAGCCTGTaGACATCTGTAGGCCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: VCQVLPVFTQGQEGKAIFQQCSL*TSVGLL Trigger: TAGAAGGCCTACAGATGTGCACAGGCTACATTGCTG...AAAAATAGCCTTTCCCTCTTGTCCTTGGGTAAAAACAGGGAGGACTTGACATAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR CCA 90 bp | GGGTTTAGTTTAGTGGGAAAGCAATGCCTTGCATATGCAAGGCCCCAGGTTCTAGGACAGCTTCTATTTTaGGGTGATAGACAACAATTC | + |
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Preference number: 4 (lower is better) Translates to: GFSLVGKQCLAYARPQVLGQLLF*GDRQQF Trigger: GAATTGTTGTCTATCACCCCAAAATAGAAGCTGTCC...TAGAACCTGGGGCCTTGCATATGCAAGGCATTGCTTTCCCACTAAACTAAACCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR CCA 90 bp | AATAACAGTGTCCTGATGATGTGGCCAAATTCCTTTACTGCAGTCACTGGAAGATGTAAGAATGCAGGATaGTCCAATCCTGTCGATGCC | + |
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Preference number: 4 (lower is better) Translates to: NNSVLMMWPNSFTAVTGRCKNAG*SNPVDA Trigger: GGCATCGACAGGATTGGACCATCCTGCATTCTTACA...TCTTCCAGTGACTGCAGTAAAGGAATTTGGCCACATCATCAGGACACTGTTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | GGGTTTAGTTTAGTGGGAAAGCAATGCCTTGCATATGCAAGGCCCCAGGTTCTAATGGTGCCAGGTGAGTaGAGATTTCTTTTGTTTTTA | + |
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Preference number: 4 (lower is better) Translates to: GFSLVGKQCLAYARPQVLMVPGE*RFLLFL Trigger: TAAAAACAAAAGAAATCTTCACTCACCTGGCACCAT...TAGAACCTGGGGCCTTGCATATGCAAGGCATTGCTTTCCCACTAAACTAAACCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | GCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAAATAAAAACAGTAAAGGAGAATGGTGCCAGGTaGGTGAAGATTTCTTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: AYARPQVLAPTLQIKTVKENGAR*VKISFV Trigger: AACAAAAGAAATCTTCACTCACCTGGCACCATTCTC...CTTTACTGTTTTTATTTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | ATTGGCAGGGAGAAAAATCACAATTGTTTTTATGTGCTCTCACCTAAGATCTCACAAGTGGAGCGATGGTaGTCTCACTATCTGCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: IGREKNHNCFYVLSPKISQVERW*SHYLPD Trigger: ATCTGGCAGATAGTGAGATCACCATCGCTCCACTTG...TGAGATCTTAGGTGAGAGCACATAAAAACAATTGTGATTTTTCTCCCTGCCAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | GTATGTCAAGTCCTCCCTGTTTTTACCCAAGGACAAGAGGGAAAGGCTATTTTTGAGAATGGTGCCAGGTaGGTGAAGATTTCTTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: VCQVLPVFTQGQEGKAIFENGAR*VKISFV Trigger: AACAAAAGAAATCTTCACTCACCTGGCACCATTCTC...AAAAATAGCCTTTCCCTCTTGTCCTTGGGTAAAAACAGGGAGGACTTGACATAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR GCA 90 bp | TTGATTCTCATGTTCCTTTACCAATATATGAAAGCATTATGGGCTGGGGGTTTACGTCATGGCCTCTTTTaGAAGTGGAGCGATGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: LILMFLYQYMKALWAGGLRHGLF*KWSDGD Trigger: ATCACCATCGCTCCACTTGCAAAAGAGGCCATGACG...TAAACCCCCAGCCCATAATGCTTTCATATATTGGTAAAGGAACATGAGAATCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR CCA 90 bp | TTGATTCTCATGTTCCTTTACCAATATATGAAAGCATTATGGGCTGGGGGTTTAGTTTGCCCATCGTCATaGCCTCTTTTGCAAGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: LILMFLYQYMKALWAGGLVCPSS*PLLQVE Trigger: CTCCACTTGCAAAAGAGGCCATGACGATGGGCAAAC...TAAACCCCCAGCCCATAATGCTTTCATATATTGGTAAAGGAACATGAGAATCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | CTTGCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAAATAAAAACAGTAGATTGCACAATTAGTTaGCCAATCTCTTTATGCAGT | + |
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Preference number: 4 (lower is better) Translates to: LAYARPQVLAPTLQIKTVDCTIS*PISLCS Trigger: ACTGCATAAAGAGATTGGTCAACTAATTGTGCAATC...TACTGTTTTTATTTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGCAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | TTGATTCTCATGTTCCTTTACCAATATATGAAAGCATTATGGGCTGGGGGTTTATATAACCTGGCTGTCTaGTTTCTCTGGGTCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: LILMFLYQYMKALWAGGLYNLAV*FLWVFC Trigger: GCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATA...TAAACCCCCAGCCCATAATGCTTTCATATATTGGTAAAGGAACATGAGAATCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | ACAGTAATTAAAATTAAAACACTGTCCAGCACTGGATCAAATTGGCAGGGAGAATATAACCTGGCTGTCTaGTTTCTCTGGGTCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: TVIKIKTLSSTGSNWQGEYNLAV*FLWVFC Trigger: GCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATA...TTCTCCCTGCCAATTTGATCCAGTGCTGGACAGTGTTTTAATTTTAATTACTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR TCA 90 bp | CTTGCATATGCAAGGCCCCAGGTTCTAGCTCCAACACTGCAAATAAAAACAGTAATGGTGCCAGGTGAGTaGAGATTTCTTTTGTTTTTA | + |
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Preference number: 4 (lower is better) Translates to: LAYARPQVLAPTLQIKTVMVPGE*RFLLFL Trigger: TAAAAACAAAAGAAATCTTCACTCACCTGGCACCAT...TACTGTTTTTATTTGCAGTGTTGGAGCTAGAACCTGGGGCCTTGCATATGCAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR GCA 90 bp | ATTGGCAGGGAGAAAAATCACAATTGTTTTTATGTGCTCTCACCTAAGATCTCACAGCAATGTAGCCTGTaGACATCTGTAGGCCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: IGREKNHNCFYVLSPKISQQCSL*TSVGLL Trigger: TAGAAGGCCTACAGATGTGCACAGGCTACATTGCTG...TGAGATCTTAGGTGAGAGCACATAAAAACAATTGTGATTTTTCTCCCTGCCAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR CCA 90 bp | GTATGTCAAGTCCTCCCTGTTTTTACCCAAGGACAAGAGGGAAAGGCTATTTTTGGACAGCTTCTATTTTaGGGTGATAGACAACAATTC | + |
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Preference number: 4 (lower is better) Translates to: VCQVLPVFTQGQEGKAIFGQLLF*GDRQQF Trigger: GAATTGTTGTCTATCACCCCAAAATAGAAGCTGTCC...AAAAATAGCCTTTCCCTCTTGTCCTTGGGTAAAAACAGGGAGGACTTGACATAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR GCA 90 bp | TTGATTCTCATGTTCCTTTACCAATATATGAAAGCATTATGGGCTGGGGGTTTATCTCTTTATGCAGTTTaGCCATCGTCATGGCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: LILMFLYQYMKALWAGGLSLYAV*PSSWPL Trigger: AAGAGGCCATGACGATGGGCAAACTGCATAAAGAGA...TAAACCCCCAGCCCATAATGCTTTCATATATTGGTAAAGGAACATGAGAATCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR CAA 90 bp | GTATGTCAAGTCCTCCCTGTTTTTACCCAAGGACAAGAGGGAAAGGCTATTTTTTTCAGTGCCTCAACATaGAGGATGACTTTTCCCCCA | + |
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Preference number: 5 (lower is better) Translates to: VCQVLPVFTQGQEGKAIFFSAST*RMTFPP Trigger: TGGGGGAAAAGTCATCCTCAATGTTGAGGCACTGAA...AAAAATAGCCTTTCCCTCTTGTCCTTGGGTAAAAACAGGGAGGACTTGACATAC 44% GC, longest homopolymer 7 nt, total homopolymer stretches 21 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS-3UTR CAA 90 bp | GTATGTCAAGTCCTCCCTGTTTTTACCCAAGGACAAGAGGGAAAGGCTATTTTTAAAGGGTGGAGAAGTTaGTTTTCATCAGTTAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: VCQVLPVFTQGQEGKAIFKGWRS*FSSVRQ Trigger: CTGCCTAACTGATGAAAACAAACTTCTCCACCCTTT...AAAAATAGCCTTTCCCTCTTGTCCTTGGGTAAAAACAGGGAGGACTTGACATAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000025957.9 |
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| CDS-3UTR CAA 90 bp | TTGAATGACCTTCTAGACAATTCTGCAGAAAACATAGCAGTTAGGCTCAAAAAGTTCAGTGCCTCAACATaGAGGATGACTTTTCCCCCA | + |
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Preference number: 5 (lower is better) Translates to: LNDLLDNSAENIAVRLKKFSAST*RMTFPP Trigger: TGGGGGAAAAGTCATCCTCAATGTTGAGGCACTGAA...CTTTTTGAGCCTAACTGCTATGTTTTCTGCAGAATTGTCTAGAAGGTCATTCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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| CDS GCA 72 bp | ATTGCACAATTAGTTGACCAATCTCTTTATGCAGTTTaGCCATCGTCATGGCCTCTTTTGCAAGTGGAGCGA | + |
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Preference number: 6 (lower is better) Translates to: IAQLVDQSLYAV*PSSWPLLQVER Trigger: TCGCTCCACTTGCAAAAGAGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025957.9 ENSMUST00000119633.8 |
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