RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DELE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024442

Ensembl transcript IDs: ENSMUST00000025314.7, ENSMUST00000235904.2, ENSMUST00000236078.2

Found 218 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGAATGCTGGGATTGGGTGTGTCTCACCATGCCCAGCAGCCTGGTaGTTCTTAAGGCCATGGAACTGTGGGCACCAGTCTGTCTTCAGG +
Preference number: 1 (lower is better)
Translates to: LNAGIGCVSPCPAAW*FLRPWNCGHQSVFR
Trigger: CCTGAAGACAGACTGGTGCCCACAGTTCCATGGCCTTAAGAACCACCAGGCTGCTGGGCATGGTGAGACACACCCAATCCCAGCATTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR TCA 90 bp GTGTTGACAGTTCTCAGGGCTCCCAGGAAGCCTCTGCTGCCTCAATaGAGAACCTCCATCTTGATGCAGGGCTTCTTGGCACAGCCTCTG +
Preference number: 1 (lower is better)
Translates to: VLTVLRAPRKPLLPQ*RTSILMQGFLAQPL
Trigger: CAGAGGCTGTGCCAAGAAGCCCTGCATCAAGATGGAGGTTCTTCATTGAGGCAGCAGAGGCTTCCTGGGAGCCCTGAGAACTGTCAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR GCA 90 bp GTAGACCAGGCTGGCCTCAAACTCATAGATATCTGCCTGCCTCTCTaGATCCTGAATGCTGGGATTGGGTGTGTCTCACCATGCCCAGCA +
Preference number: 1 (lower is better)
Translates to: VDQAGLKLIDICLPL*ILNAGIGCVSPCPA
Trigger: TGCTGGGCATGGTGAGACACACCCAATCCCAGCATTCAGGATGCAGAGAGGCAGGCAGATATCTATGAGTTTGAGGCCAGCCTGGTCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR CCA 90 bp CTCACCATGCCCAGCAGCCTGGTGGTTCTTAAGGCCATGGAACTGTaGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGAGTAAGGTTC +
Preference number: 1 (lower is better)
Translates to: LTMPSSLVVLKAMEL*APVCLQEPKQGVRF
Trigger: GAACCTTACTCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCACAGTTCCATGGCCTTAAGAACCACCAGGCTGCTGGGCATGGTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR CCA 90 bp ACTCATAGATATCTGCCTGCCTCTCTGCATCCTGAATGCTGGGATTaGGTGTGTCTCACCATGCCCAGCAGCCTGGTGGTTCTTAAGGCC +
Preference number: 1 (lower is better)
Translates to: THRYLPASLHPECWD*VCLTMPSSLVVLKA
Trigger: GGCCTTAAGAACCACCAGGCTGCTGGGCATGGTGAGACACACCCAATCCCAGCATTCAGGATGCAGAGAGGCAGGCAGATATCTATGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR TCA 90 bp GGTCTCCACTCTCTGGCTCCAAGACTCCAGGTGCCTAATCTCCACTaGTCTGGTAGACCAGGCTGGCCTCAAACTCATAGATATCTGCCT +
Preference number: 1 (lower is better)
Translates to: GLHSLAPRLQVPNLH*SGRPGWPQTHRYLP
Trigger: AGGCAGATATCTATGAGTTTGAGGCCAGCCTGGTCTACCAGATCAGTGGAGATTAGGCACCTGGAGTCTTGGAGCCAGAGAGTGGAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR CCA 90 bp CCTCAAACTCATAGATATCTGCCTGCCTCTCTGCATCCTGAATGCTaGGATTGGGTGTGTCTCACCATGCCCAGCAGCCTGGTGGTTCTT +
Preference number: 1 (lower is better)
Translates to: PQTHRYLPASLHPEC*DWVCLTMPSSLVVL
Trigger: AAGAACCACCAGGCTGCTGGGCATGGTGAGACACACCCAATCCCAGCATTCAGGATGCAGAGAGGCAGGCAGATATCTATGAGTTTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR TCA 90 bp CTTGGTAATCCTCCCTCAGCATCCAGAGTGATGTTATCGGATGTGTaGGCTTCCTGGCTTCCACCACAGGTTCTTAACCGAGGATGTTTG +
Preference number: 1 (lower is better)
Translates to: LGNPPSASRVMLSDV*ASWLPPQVLNRGCL
Trigger: CAAACATCCTCGGTTAAGAACCTGTGGTGGAAGCCAGGAAGCTCACACATCCGATAACATCACTCTGGATGCTGAGGGAGGATTACCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR TCA 90 bp GGAATGCTGGTGTTGACAGTTCTCAGGGCTCCCAGGAAGCCTCTGCTGCCTCAAGTGCCTAATCTCCACTaGTCTGGTAGACCAGGCTGG +
Preference number: 2 (lower is better)
Translates to: GMLVLTVLRAPRKPLLPQVPNLH*SGRPGW
Trigger: CCAGCCTGGTCTACCAGATCAGTGGAGATTAGGCAC...TTGAGGCAGCAGAGGCTTCCTGGGAGCCCTGAGAACTGTCAACACCAGCATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR CAA 90 bp GAACAGCTAAACTGCATGCCGAGCGGGGATGGGATGCAGTTTCCGTaGGGCTGCCAAGTAGGTCAGTGTTTTCTGGCTCCTCCCAAGAAC +
Preference number: 2 (lower is better)
Translates to: EQLNCMPSGDGMQFP*GCQVGQCFLAPPKN
Trigger: GTTCTTGGGAGGAGCCAGAAAACACTGACCTACTTGGCAGCCCAACGGAAACTGCATCCCATCCCCGCTCGGCATGCAGTTTAGCTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR GCA 90 bp TGTTATCGGATGTGTGAGCTTCCTGGCTTCCACCACAGGTTCTTAACCGAGGATGGGTGTGTCTCACCATaGCCAGCAGCCTGGTGGTTC +
Preference number: 2 (lower is better)
Translates to: CYRMCELPGFHHRFLTEDGCVSP*PAAWWF
Trigger: GAACCACCAGGCTGCTGGGCATGGTGAGACACACCC...ATCCTCGGTTAAGAACCTGTGGTGGAAGCCAGGAAGCTCACACATCCGATAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR TCA 90 bp AATGCTGGTGTTGACAGTTCTCAGGGCTCCCAGGAAGCCTCTGCTGCCTCAATGTCCTCAGTCGACAACTaGGGAGATGTGGTTGACATC +
Preference number: 2 (lower is better)
Translates to: NAGVDSSQGSQEASAASMSSVDN*GDVVDI
Trigger: GATGTCAACCACATCTCCTCAGTTGTCGACTGAGGA...CATTGAGGCAGCAGAGGCTTCCTGGGAGCCCTGAGAACTGTCAACACCAGCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR CCA 90 bp GGGAATGCTGGTGTTGACAGTTCTCAGGGCTCCCAGGAAGCCTCTGCTGCCTCAAACTGGCCTCTTCTTTaGGACTCAAATTGTGGTATC +
Preference number: 2 (lower is better)
Translates to: GNAGVDSSQGSQEASAASNWPLL*DSNCGI
Trigger: GATACCACAATTTGAGTCCCAAAGAAGAGGCCAGTT...TGAGGCAGCAGAGGCTTCCTGGGAGCCCTGAGAACTGTCAACACCAGCATTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR TCA 90 bp ATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCTCTGGGGGTGGTGGTGGTaGTTTGAGACAGGGTTTCTC +
Preference number: 2 (lower is better)
Translates to: ISLPDLSQKELMVSTLWLWGWWW*FETGFL
Trigger: GAGAAACCCTGTCTCAAATCACCACCACCACCCCCA...GAGCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
3UTR-3UTR TCA 90 bp ATTCTCCTGCCTCAGCCTCTTGCGTGTATGTGTGGGCTTGTTTTTGGGCACAGACCTCTGCTGCCTCAATaGAGAACCTCCATCTTGATG +
Preference number: 2 (lower is better)
Translates to: ILLPQPLACMCGLVFGHRPLLPQ*RTSILM
Trigger: CATCAAGATGGAGGTTCTTCATTGAGGCAGCAGAGG...TCTGTGCCCAAAAACAAGCCCACACATACACGCAAGAGGCTGAGGCAGGAGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR TCA 90 bp CAGCCTCTGCTGCTGTGTACTTTGAGTCTGACCTTTCCCAAAAAGAACTCATGGCTGAGGAGATGTGGTTaGCATCCAGTCACTGCTTCC +
Preference number: 2 (lower is better)
Translates to: QPLLLCTLSLTFPKKNSWLRRCG*HPVTAS
Trigger: GGAAGCAGTGACTGGATGTCAACCACATCTCCTCAG...CCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACACAGCAGCAGAGGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR CCA 90 bp AAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGAACTGGCCTCTTCTTTaGGACTCAAATTGTGGTATC +
Preference number: 2 (lower is better)
Translates to: KARVFTHVPLPYGAGEVLNWPLL*DSNCGI
Trigger: GATACCACAATTTGAGTCCCAAAGAAGAGGCCAGTT...CAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR-3UTR CCA 90 bp CAGCCTCTGCTGCTGTGTACTTTGAGTCTGACCTTTCCCAAAAAGAACTCATGGCTGCATCCTGAATGCTaGGATTGGGTGTGTCTCACC +
Preference number: 2 (lower is better)
Translates to: QPLLLCTLSLTFPKKNSWLHPEC*DWVCLT
Trigger: GGTGAGACACACCCAATCCCAGCATTCAGGATGCAG...CCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACACAGCAGCAGAGGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR CCA 90 bp GTATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCAAGCCTTGGCTGTCCTaGAACTCACCTGGTAGACCA +
Preference number: 2 (lower is better)
Translates to: VYPYLTFPKKNSWSPLSGKPWLS*NSPGRP
Trigger: TGGTCTACCAGGTGAGTTCCAGGACAGCCAAGGCTT...GCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATATAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
3UTR CAA 90 bp ATCTTGATGCAGGGCTTCTTGGCACAGCCTCTGCTGCTGTGTACTTaGAGTCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCT +
Preference number: 2 (lower is better)
Translates to: ILMQGFLAQPLLLCT*SLTFPKKNSWSPLS
Trigger: AGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACACAGCAGCAGAGGCTGTGCCAAGAAGCCCTGCATCAAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR CCA 90 bp ACAGGAGCCAAGTTACCAGAGGACCCGGACAAACTGCTGAGTCATGTGCAGTTCCTTAAAGGAAAGGAGTaGTCCTCTAGCTTACTGTGT +
Preference number: 2 (lower is better)
Translates to: TGAKLPEDPDKLLSHVQFLKGKE*SSSLLC
Trigger: ACACAGTAAGCTAGAGGACCACTCCTTTCCTTTAAG...GAACTGCACATGACTCAGCAGTTTGTCCGGGTCCTCTGGTAACTTGGCTCCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
3UTR-3UTR TCA 90 bp GTATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCGTGGTGGTGGTGATTTaGGACAGGGTTTCTCTGTAT +
Preference number: 2 (lower is better)
Translates to: VYPYLTFPKKNSWSPLSGVVVVI*DRVSLY
Trigger: ATACAGAGAAACCCTGTCTCAAATCACCACCACCAC...GCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATATAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
3UTR-3UTR CCA 90 bp GTATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCACAACTGAGGAGATGTaGTTGACATCCAGTCACTGC +
Preference number: 2 (lower is better)
Translates to: VYPYLTFPKKNSWSPLSGTTEEM*LTSSHC
Trigger: GCAGTGACTGGATGTCAACCACATCTCCTCAGTTGT...GCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATATAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
3UTR-3UTR CCA 90 bp TTGAGTCAGTTTTTCACTGTAGGCCTTGAACTCAAGACAATTCTCCTGCCTCAGAAGGCCATGGAACTGTaGGCACCAGTCTGTCTTCAG +
Preference number: 2 (lower is better)
Translates to: LSQFFTVGLELKTILLPQKAMEL*APVCLQ
Trigger: CTGAAGACAGACTGGTGCCCACAGTTCCATGGCCTT...CTGAGGCAGGAGAATTGTCTTGAGTTCAAGGCCTACAGTGAAAAACTGACTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR TCA 90 bp TGGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGAGTAAGGTTCTTTCTATGGAAATTGTGGTATCTCTaGGAACTCTCAGGCTCCATC +
Preference number: 2 (lower is better)
Translates to: WAPVCLQEPKQGVRFFLWKLWYL*ELSGSI
Trigger: GATGGAGCCTGAGAGTTCTCAGAGATACCACAATTT...CCATAGAAAGAACCTTACTCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR-3UTR CCA 90 bp TTGAGTCAGTTTTTCACTGTAGGCCTTGAACTCAAGACAATTCTCCTGCCTCAGGTGTGGGCTTGTTTTTaGGCACAGAGTAGATGGGGT +
Preference number: 2 (lower is better)
Translates to: LSQFFTVGLELKTILLPQVWACF*AQSRWG
Trigger: ACCCCATCTACTCTGTGCCCAAAAACAAGCCCACAC...CTGAGGCAGGAGAATTGTCTTGAGTTCAAGGCCTACAGTGAAAAACTGACTCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR TCA 90 bp GTATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCAGGTTCTTTCTATGGTaGAATGGCTGCATCTCAATC +
Preference number: 2 (lower is better)
Translates to: VYPYLTFPKKNSWSPLSGRFFLW*NGCISI
Trigger: GATTGAGATGCAGCCATTTCACCATAGAAAGAACCT...GCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATATAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
3UTR-3UTR TCA 90 bp CTACACAGGACAGAATTTTCAAGGAAGCACACGGCCATCCGACTGAAGACATTTGAGCAGATGCTAGAGTaGCTAAGACAGAACTCAAGA +
Preference number: 2 (lower is better)
Translates to: LHRTEFSRKHTAIRLKTFEQMLE*LRQNSR
Trigger: TCTTGAGTTCTGTCTTAGTCACTCTAGCATCTGCTC...AAATGTCTTCAGTCGGATGGCCGTGTGCTTCCTTGAAAATTCTGTCCTGTGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
3UTR-3UTR TCA 90 bp TGTACTTTGAGTCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCAGGTTCTTTCTATGGTaGAATGGCTGCATCTCAATC +
Preference number: 2 (lower is better)
Translates to: CTLSLTFPKKNSWSPLSGRFFLW*NGCISI
Trigger: GATTGAGATGCAGCCATTTCACCATAGAAAGAACCT...GCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR-3UTR GCA 90 bp TTGAGTCAGTTTTTCACTGTAGGCCTTGAACTCAAGACAATTCTCCTGCCTCAGAAACTCATAGATATCTaGCTGCCTCTCTGCATCCTG +
Preference number: 2 (lower is better)
Translates to: LSQFFTVGLELKTILLPQKLIDI*LPLCIL
Trigger: CAGGATGCAGAGAGGCAGGCAGATATCTATGAGTTT...CTGAGGCAGGAGAATTGTCTTGAGTTCAAGGCCTACAGTGAAAAACTGACTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR CCA 72 bp TATCTGCCTGCCTCTCTGCATCCTGAATGCTGGGATTaGGTGTGTCTCACCATGCCCAGCAGCCTGGTGGTT +
Preference number: 3 (lower is better)
Translates to: YLPASLHPECWD*VCLTMPSSLVV
Trigger: AACCACCAGGCTGCTGGGCATGGTGAGACACACCCAATCCCAGCATTCAGGATGCAGAGAGGCAGGCAGATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR TCA 72 bp GGAAGCCTCTGCTGCCTCAATGAAGAACCTCCATCTTaGTGCAGGGCTTCTTGGCACAGCCTCTGCTGCTGT +
Preference number: 3 (lower is better)
Translates to: GSLCCLNEEPPS*CRASWHSLCCC
Trigger: ACAGCAGCAGAGGCTGTGCCAAGAAGCCCTGCATCAAGATGGAGGTTCTTCATTGAGGCAGCAGAGGCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR GCA 72 bp AGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTaGCGGGGAGGTACTGATGGTTCCTGGGAAGGTAAG +
Preference number: 3 (lower is better)
Translates to: SPGLYTRSSSLW*RGGTDGSWEGK
Trigger: CTTACCTTCCCAGGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR GCA 72 bp TGCATCCTGAATGCTGGGATTGGGTGTGTCTCACCATaGCCAGCAGCCTGGTGGTTCTTAAGGCCATGGAAC +
Preference number: 3 (lower is better)
Translates to: CILNAGIGCVSP*PAAWWFLRPWN
Trigger: GTTCCATGGCCTTAAGAACCACCAGGCTGCTGGGCATGGTGAGACACACCCAATCCCAGCATTCAGGATGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR CCA 72 bp CAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATaGTGCCGGGGAGGTACTGATGGTTCCTGGGAAGGT +
Preference number: 3 (lower is better)
Translates to: QSPGLYTRSSSL*CRGGTDGSWEG
Trigger: ACCTTCCCAGGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR CCA 72 bp CATAGATATCTGCCTGCCTCTCTGCATCCTGAATGCTaGGATTGGGTGTGTCTCACCATGCCCAGCAGCCTG +
Preference number: 3 (lower is better)
Translates to: HRYLPASLHPEC*DWVCLTMPSSL
Trigger: CAGGCTGCTGGGCATGGTGAGACACACCCAATCCCAGCATTCAGGATGCAGAGAGGCAGGCAGATATCTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR CCA 72 bp GGGCAACTTCAAGGTCACGCCCTTAAAGGAAAGGAGTaGTCCTCTAGCTTACTGTGTCCTCCCTCCCAGCTC +
Preference number: 3 (lower is better)
Translates to: GQLQGHALKGKE*SSSLLCPPSQL
Trigger: GAGCTGGGAGGGAGGACACAGTAAGCTAGAGGACCACTCCTTTCCTTTAAGGGCGTGACCTTGAAGTTGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
3UTR GCA 72 bp ACTCATAGATATCTGCCTGCCTCTCTGCATCCTGAATaGTGGGATTGGGTGTGTCTCACCATGCCCAGCAGC +
Preference number: 3 (lower is better)
Translates to: THRYLPASLHPE*WDWVCLTMPSS
Trigger: GCTGCTGGGCATGGTGAGACACACCCAATCCCAGCATTCAGGATGCAGAGAGGCAGGCAGATATCTATGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR TCA 72 bp CCTCCCTCAGCATCCAGAGTGATGTTATCGGATGTGTaGGCTTCCTGGCTTCCACCACAGGTTCTTAACCGA +
Preference number: 3 (lower is better)
Translates to: PPSASRVMLSDV*ASWLPPQVLNR
Trigger: TCGGTTAAGAACCTGTGGTGGAAGCCAGGAAGCTCACACATCCGATAACATCACTCTGGATGCTGAGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR GCA 72 bp GCTGGCCTCAAACTCATAGATATCTGCCTGCCTCTCTaGATCCTGAATGCTGGGATTGGGTGTGTCTCACCA +
Preference number: 3 (lower is better)
Translates to: AGLKLIDICLPL*ILNAGIGCVSP
Trigger: TGGTGAGACACACCCAATCCCAGCATTCAGGATGCAGAGAGGCAGGCAGATATCTATGAGTTTGAGGCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR CCA 72 bp GACAATTCTCCTGCCTCAGCCTCTTGCGTGTATGTGTaGGCTTGTTTTTGGGCACAGAGTAGATGGGGTGCA +
Preference number: 3 (lower is better)
Translates to: DNSPASASCVYV*ACFWAQSRWGA
Trigger: TGCACCCCATCTACTCTGTGCCCAAAAACAAGCCCACACATACACGCAAGAGGCTGAGGCAGGAGAATTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR CCA 72 bp CCTCCACAGCATCATGGCTTTCCAAATGACCTCAGTTaGCTTAGTGAGACTCCTGGGAATGCTGGTGTTGAC +
Preference number: 3 (lower is better)
Translates to: PPQHHGFPNDLS*LSETPGNAGVD
Trigger: GTCAACACCAGCATTCCCAGGAGTCTCACTAAGCCAACTGAGGTCATTTGGAAAGCCATGATGCTGTGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR GCA 72 bp CAGGCTAGCCTGAAATTCAAAAGATCTGCTTGTCTCTaGCTCCAGTGCGTTGGGATTGAAGTTGCACACCAC +
Preference number: 3 (lower is better)
Translates to: QASLKFKRSACL*LQCVGIEVAHH
Trigger: GTGGTGTGCAACTTCAATCCCAACGCACTGGAGGCAGAGACAAGCAGATCTTTTGAATTTCAGGCTAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
3UTR CCA 72 bp GACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTaGCTCCAAGACTCCAGGTGCCTAATCTCCACTGAT +
Preference number: 3 (lower is better)
Translates to: DLSQKELMVSTL*LQDSRCLISTD
Trigger: ATCAGTGGAGATTAGGCACCTGGAGTCTTGGAGCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR TCA 72 bp CTGGCCTCTTCTTTGGGACTCAAATTGTGGTATCTCTaGGAACTCTCAGGCTCCATCTTTAAGGAGGAGGTC +
Preference number: 3 (lower is better)
Translates to: LASSLGLKLWYL*ELSGSIFKEEV
Trigger: GACCTCCTCCTTAAAGATGGAGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR TCA 72 bp GGACAGAATTTTCAAGGAAGCACACGGCCATCCGACTaGAGACATTTCTCAGCCTCCTCTATAACAGATAGC +
Preference number: 3 (lower is better)
Translates to: GQNFQGSTRPSD*RHFSASSITDS
Trigger: GCTATCTGTTATAGAGGAGGCTGAGAAATGTCTTCAGTCGGATGGCCGTGTGCTTCCTTGAAAATTCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
3UTR TCA 72 bp AAGATCTGCTTGTCTCTGCCTCCAGTGCGTTGGGATTaGAGTTGCACACCACTATACCTGTCCAGTTTACTA +
Preference number: 3 (lower is better)
Translates to: KICLSLPPVRWD*SCTPLYLSSLL
Trigger: TAGTAAACTGGACAGGTATAGTGGTGTGCAACTTCAATCCCAACGCACTGGAGGCAGAGACAAGCAGATCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
3UTR GCA 72 bp CTGAAATTCAAAAGATCTGCTTGTCTCTGCCTCCAGTaGGTTGGGATTGAAGTTGCACACCACTATACCTGT +
Preference number: 3 (lower is better)
Translates to: LKFKRSACLCLQ*VGIEVAHHYTC
Trigger: ACAGGTATAGTGGTGTGCAACTTCAATCCCAACGCACTGGAGGCAGAGACAAGCAGATCTTTTGAATTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
3UTR TCA 72 bp ACCATCTGTTTTATTAAACACTTGTATATCCCTACCTaGCCTTTCCCAAAAAGAACTCATGGTCTCCACTCT +
Preference number: 3 (lower is better)
Translates to: TICFIKHLYIPT*PFPKRTHGLHS
Trigger: AGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATATACAAGTGTTTAATAAAACAGATGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
3UTR TCA 72 bp AACGCTGTATATTATGTGGGCAGGTATAAACATCACTaGATAAACTCGTTTGAGTCAGTTTTTCACTGTAGG +
Preference number: 3 (lower is better)
Translates to: NAVYYVGRYKHH*INSFESVFHCR
Trigger: CCTACAGTGAAAAACTGACTCAAACGAGTTTATTCAGTGATGTTTATACCTGCCCACATAATATACAGCGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GCAGCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGAGAGGGGCGTGGAAGTaGATCTGCCTCGCCAGGTGC +
Preference number: 4 (lower is better)
Translates to: AAKARVFTHVPLPYGAGERGAWK*ICLARC
Trigger: GCACCTGGCGAGGCAGATCCACTTCCACGCCCCTCT...CTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp GGAATGCTGGTGTTGACAGTTCTCAGGGCTCCCAGGAAGCCTCTGCTGCCTCAAGCACTGGGATGGAGCTaGGGGATGGTCTTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: GMLVLTVLRAPRKPLLPQALGWS*GMVFLA
Trigger: GGCCAGGAAGACCATCCCTCAGCTCCATCCCAGTGC...TTGAGGCAGCAGAGGCTTCCTGGGAGCCCTGAGAACTGTCAACACCAGCATTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp GATTGGGTGTGTCTCACCATGCCCAGCAGCCTGGTGGTTCTTAAGGCCATGGAAGGCATGAGGGAGGCCTaGGGCACCAGCCAACAGGGT +
Preference number: 4 (lower is better)
Translates to: DWVCLTMPSSLVVLKAMEGMREA*GTSQQG
Trigger: ACCCTGTTGGCTGGTGCCTCAGGCCTCCCTCATGCC...TTCCATGGCCTTAAGAACCACCAGGCTGCTGGGCATGGTGAGACACACCCAATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GCAGCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGAGGGATGGTCTTCCTaGCCCTGCCTTGGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: AAKARVFTHVPLPYGAGEEGWSS*PCLGSL
Trigger: CAGGGAACCAAGGCAGGGCCAGGAAGACCATCCCTC...CTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGATGGTTCCCCTGTCGTGGCCAGGTaGCTGGGCCCTGCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: GLYTRSSSLWCRGGTDGSPVVAR*LGPAAS
Trigger: GGAAGCAGCAGGGCCCAGCCACCTGGCCACGACAGG...GGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp TTCTCCTGCCTCAGCCTCTTGCGTGTATGTGTGGGCTTGTTTTTGGGCACAGAGGGCATGAGGGAGGCCTaGGGCACCAGCCAACAGGGT +
Preference number: 4 (lower is better)
Translates to: FSCLSLLRVCVGLFLGTEGMREA*GTSQQG
Trigger: ACCCTGTTGGCTGGTGCCTCAGGCCTCCCTCATGCC...CTCTGTGCCCAAAAACAAGCCCACACATACACGCAAGAGGCTGAGGCAGGAGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp GGAATGCTGGTGTTGACAGTTCTCAGGGCTCCCAGGAAGCCTCTGCTGCCTCAAGGGGTGCCTCTGCCATaGTCGAGACACAAGCCCACA +
Preference number: 4 (lower is better)
Translates to: GMLVLTVLRAPRKPLLPQGVPLP*SRHKPT
Trigger: TGTGGGCTTGTGTCTCGAGCATGGCAGAGGCACCCC...TTGAGGCAGCAGAGGCTTCCTGGGAGCCCTGAGAACTGTCAACACCAGCATTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp GCAGCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGCAGGTGGCTGGGCCCTaGTGCTTCCACGTTAAAGAG +
Preference number: 4 (lower is better)
Translates to: AAKARVFTHVPLPYGAGEQVAGP*CFHVKE
Trigger: CTCTTTAACGTGGAAGCAGCAGGGCCCAGCCACCTG...CTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTAGAGGGATGGTCTTCCTaGCCCTGCCTTGGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: AKARVFTHVPLPYGAGEVEGWSS*PCLGSL
Trigger: CAGGGAACCAAGGCAGGGCCAGGAAGACCATCCCTC...TACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp CGCAGCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGATGGAGCTGAGGGATaGTCTTCCTGGCCCTGCCTT +
Preference number: 4 (lower is better)
Translates to: RSQSPGLYTRSSSLWCRGDGAEG*SSWPCL
Trigger: AAGGCAGGGCCAGGAAGACCATCCCTCAGCTCCATC...TCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGCTGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp ATTCTCCTGCCTCAGCCTCTTGCGTGTATGTGTGGGCTTGTTTTTGGGCACAGACCTGTCGTGGCCAGGTaGCTGGGCCCTGCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: ILLPQPLACMCGLVFGHRPVVAR*LGPAAS
Trigger: GGAAGCAGCAGGGCCCAGCCACCTGGCCACGACAGG...TCTGTGCCCAAAAACAAGCCCACACATACACGCAAGAGGCTGAGGCAGGAGAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp CGCAGCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGATGTCTGAGACCCATCTaGACTGGTGGGTTTGGGCGT +
Preference number: 4 (lower is better)
Translates to: RSQSPGLYTRSSSLWCRGCLRPI*TGGFGR
Trigger: ACGCCCAAACCCACCAGTTCAGATGGGTCTCAGACA...TCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGCTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp GGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGATGGTTCCGCACTGGGATGGAGCTaGGGGATGGTCTTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: GLYTRSSSLWCRGGTDGSALGWS*GMVFLA
Trigger: GGCCAGGAAGACCATCCCTCAGCTCCATCCCAGTGC...GGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp TCCCTCCCAGCTCCCAGGAGAGCAGATGCTAGAGTGACTAAGACAGAACTCAAGGCACTGGGATGGAGCTaGGGGATGGTCTTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: SLPAPRRADARVTKTELKALGWS*GMVFLA
Trigger: GGCCAGGAAGACCATCCCTCAGCTCCATCCCAGTGC...CTTGAGTTCTGTCTTAGTCACTCTAGCATCTGCTCTCCTGGGAGCTGGGAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR GCA 90 bp TCCCTCCCAGCTCCCAGGAGAGCAGATGCTAGAGTGACTAAGACAGAACTCAAGGCGTGGAAGTGGATCTaGCTCGCCAGGTGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: SLPAPRRADARVTKTELKAWKWI*LARCKA
Trigger: GGCCTTGCACCTGGCGAGGCAGATCCACTTCCACGC...CTTGAGTTCTGTCTTAGTCACTCTAGCATCTGCTCTCCTGGGAGCTGGGAGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR GCA 90 bp TTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGATGGTTCCTGGGCCCTGGGGGTGCCTCTaGCATGCTCGAGACACAAGC +
Preference number: 4 (lower is better)
Translates to: FTHVPLPYGAGEVLMVPGPWGCL*HARDTS
Trigger: GCTTGTGTCTCGAGCATGGCAGAGGCACCCCCAGGG...CCCAGGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp GGAATGCTGGTGTTGACAGTTCTCAGGGCTCCCAGGAAGCCTCTGCTGCCTCAACAGGTGGCTGGGCCCTaGTGCTTCCACGTTAAAGAG +
Preference number: 4 (lower is better)
Translates to: GMLVLTVLRAPRKPLLPQQVAGP*CFHVKE
Trigger: CTCTTTAACGTGGAAGCAGCAGGGCCCAGCCACCTG...TTGAGGCAGCAGAGGCTTCCTGGGAGCCCTGAGAACTGTCAACACCAGCATTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp AAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGCGAGATGGCCACTTCTaGAGAGGAGGCCGAGGTTCC +
Preference number: 4 (lower is better)
Translates to: KARVFTHVPLPYGAGEVLRDGHF*RGGRGS
Trigger: GGAACCTCGGCCTCCTCTGCAGAAGTGGCCATCTCG...CAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTATCTGAGGGAAGGCACTaGGATGGAGCTGAGGGATGG +
Preference number: 4 (lower is better)
Translates to: AKARVFTHVPLPYGAGEVSEGRH*DGAEGW
Trigger: CCATCCCTCAGCTCCATCCCAGTGCCTTCCCTCAGA...TACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp CGCAGCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAACCCCAAGGAAAGCTTaGGCCTCTGTCAAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: RSQSPGLYTRSSSLWCRGTPRKA*ASVKPE
Trigger: CTCTGGCTTGACAGAGGCCCAAGCTTTCCTTGGGGT...TCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGCTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp TTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGATGGTTCCTGGGTGGGGGCACCATGGCTaGCTCCGAGATGGCCACTTC +
Preference number: 4 (lower is better)
Translates to: FTHVPLPYGAGEVLMVPGWGHHG*LRDGHF
Trigger: GAAGTGGCCATCTCGGAGCCAGCCATGGTGCCCCCA...CCCAGGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp AAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGCCAAGAGCGTTCAGCTaGCTGAGGTCCTGCTACCAG +
Preference number: 4 (lower is better)
Translates to: KARVFTHVPLPYGAGEVLPRAFS*LRSCYQ
Trigger: CTGGTAGCAGGACCTCAGCCAGCTGAACGCTCTTGG...CAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GATTGGGTGTGTCTCACCATGCCCAGCAGCCTGGTGGTTCTTAAGGCCATGGAAGATGGAGCTGAGGGATaGTCTTCCTGGCCCTGCCTT +
Preference number: 4 (lower is better)
Translates to: DWVCLTMPSSLVVLKAMEDGAEG*SSWPCL
Trigger: AAGGCAGGGCCAGGAAGACCATCCCTCAGCTCCATC...TTCCATGGCCTTAAGAACCACCAGGCTGCTGGGCATGGTGAGACACACCCAATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp CTTAAGGCCATGGAACTGTGGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGAACTTCAGTCCTGTCGTaGCCAGGTGGCTGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: LKAMELWAPVCLQEPKQGTSVLS*PGGWAL
Trigger: CAGGGCCCAGCCACCTGGCCACGACAGGACTGAAGT...TCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCACAGTTCCATGGCCTTAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp AAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGCTCTCGCTCAGGGTCTaGCAAAGAGCCTGGACTTTG +
Preference number: 4 (lower is better)
Translates to: KARVFTHVPLPYGAGEVLLSLRV*QRAWTL
Trigger: CAAAGTCCAGGCTCTTTGTCAGACCCTGAGCGAGAG...CAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp TTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGATGGTTCCTGGGCCAGAGTCTGCAGCCTaGTTCAGCAGAGAGACTGCC +
Preference number: 4 (lower is better)
Translates to: FTHVPLPYGAGEVLMVPGPESAA*FSRETA
Trigger: GGCAGTCTCTCTGCTGAAGCAGGCTGCAGACTCTGG...CCCAGGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp CTTAAGGCCATGGAACTGTGGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGATGGCTGGCTCCGAGATaGCCACTTCTGCAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: LKAMELWAPVCLQEPKQGWLAPR*PLLQRR
Trigger: CCTCCTCTGCAGAAGTGGCCATCTCGGAGCCAGCCA...TCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCACAGTTCCATGGCCTTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR CAA 72 bp TCAGTTGGCTTAGTGAGACTCCTGGGAATGCTGGTGTaGACAGTTCTCAGGGCTCCCAGGAAGCCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: SVGLVRLLGMLV*TVLRAPRKPLL
Trigger: CAGCAGAGGCTTCCTGGGAGCCCTGAGAACTGTCAACACCAGCATTCCCAGGAGTCTCACTAAGCCAACTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp ACAGGAGCCAAGTTACCAGAGGACCCGGACAAACTGCTGAGTCATGTGCAGTTCTGTCTGAGACCCATCTaGACTGGTGGGTTTGGGCGT +
Preference number: 4 (lower is better)
Translates to: TGAKLPEDPDKLLSHVQFCLRPI*TGGFGR
Trigger: ACGCCCAAACCCACCAGTTCAGATGGGTCTCAGACA...GAACTGCACATGACTCAGCAGTTTGTCCGGGTCCTCTGGTAACTTGGCTCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR TCA 90 bp ATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCTCCCAGTGCTTGAGGCATaGGGGAGGCCTGAGGCACCA +
Preference number: 4 (lower is better)
Translates to: ISLPDLSQKELMVSTLWLPVLEA*GRPEAP
Trigger: TGGTGCCTCAGGCCTCCCTCATGCCTCAAGCACTGG...GAGCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
CDS-3UTR TCA 90 bp CAGCCTCTGCTGCTGTGTACTTTGAGTCTGACCTTTCCCAAAAAGAACTCATGGCCAGTGCTTGAGGCATaGGGGAGGCCTGAGGCACCA +
Preference number: 4 (lower is better)
Translates to: QPLLLCTLSLTFPKKNSWPVLEA*GRPEAP
Trigger: TGGTGCCTCAGGCCTCCCTCATGCCTCAAGCACTGG...CCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACACAGCAGCAGAGGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp GATTGGGTGTGTCTCACCATGCCCAGCAGCCTGGTGGTTCTTAAGGCCATGGAAGCCCACATTGTACTGTaGTTTGCTGTAGCCACGGTC +
Preference number: 4 (lower is better)
Translates to: DWVCLTMPSSLVVLKAMEAHIVL*FAVATV
Trigger: GACCGTGGCTACAGCAAAGCACAGTACAATGTGGGC...TTCCATGGCCTTAAGAACCACCAGGCTGCTGGGCATGGTGAGACACACCCAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp TGGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGAGTAAGGTTCTTTCTATGGCCCTGGGGGTGCCTCTaGCATGCTCGAGACACAAGC +
Preference number: 4 (lower is better)
Translates to: WAPVCLQEPKQGVRFFLWPWGCL*HARDTS
Trigger: GCTTGTGTCTCGAGCATGGCAGAGGCACCCCCAGGG...CCATAGAAAGAACCTTACTCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp CTTAAGGCCATGGAACTGTGGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGACCAGAGTCTGCAGCCTaGTTCAGCAGAGAGACTGCC +
Preference number: 4 (lower is better)
Translates to: LKAMELWAPVCLQEPKQGPESAA*FSRETA
Trigger: GGCAGTCTCTCTGCTGAAGCAGGCTGCAGACTCTGG...TCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCACAGTTCCATGGCCTTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp AAGAACCTCCATCTTGATGCAGGGCTTCTTGGCACAGCCTCTGCTGCTGTGTACGAGAATCCCCATTGCTaGCCGCCAGCCAGAGGTATT +
Preference number: 4 (lower is better)
Translates to: KNLHLDAGLLGTASAAVYENPHC*PPARGI
Trigger: AATACCTCTGGCTGGCGGCCAGCAATGGGGATTCTC...GTACACAGCAGCAGAGGCTGTGCCAAGAAGCCCTGCATCAAGATGGAGGTTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp AACTGGCCTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTTCGTGGCCAGGTGGCTaGGCCCTGCTGCTTCCACGT +
Preference number: 4 (lower is better)
Translates to: NWPLLWDSNCGISENSQASWPGG*ALLLPR
Trigger: ACGTGGAAGCAGCAGGGCCCAGCCACCTGGCCACGA...AGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGGCCAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp TTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGATGGTTCCTGGGTGCAGAGGGAGGGGCTaGAGAAAGACTTCAGTCCTG +
Preference number: 4 (lower is better)
Translates to: FTHVPLPYGAGEVLMVPGCRGRG*RKTSVL
Trigger: CAGGACTGAAGTCTTTCTCCAGCCCCTCCCTCTGCA...CCCAGGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GCTGCCTCAATGAAGAACCTCCATCTTGATGCAGGGCTTCTTGGCACAGCCTCTTGCAGAGGGAGGGGCTaGAGAAAGACTTCAGTCCTG +
Preference number: 4 (lower is better)
Translates to: AASMKNLHLDAGLLGTASCRGRG*RKTSVL
Trigger: CAGGACTGAAGTCTTTCTCCAGCCCCTCCCTCTGCA...AGAGGCTGTGCCAAGAAGCCCTGCATCAAGATGGAGGTTCTTCATTGAGGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp AAGTCGACCTTGTGGCTTATAAACCCCCATAAAGGGCAACTTCAAGGTCACGCCTCTCAGGGAGCTATCTaGGGGAAGGCACTGGGATGG +
Preference number: 4 (lower is better)
Translates to: KSTLWLINPHKGQLQGHASQGAI*GKALGW
Trigger: CCATCCCAGTGCCTTCCCTCAGATAGCTCCCTGAGA...GGCGTGACCTTGAAGTTGCCCTTTATGGGGGTTTATAAGCCACAAGGTCGACTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR GCA 90 bp TGTACTTTGAGTCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCGCGTGGAAGTGGATCTaGCTCGCCAGGTGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: CTLSLTFPKKNSWSPLSGAWKWI*LARCKA
Trigger: GGCCTTGCACCTGGCGAGGCAGATCCACTTCCACGC...GCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp CTTAAGGCCATGGAACTGTGGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGAGCTGTAGCCACGGTCTaGGGCTTTCTGGAAGTAGGA +
Preference number: 4 (lower is better)
Translates to: LKAMELWAPVCLQEPKQGAVATV*GFLEVG
Trigger: TCCTACTTCCAGAAAGCCGCAGACCGTGGCTACAGC...TCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCACAGTTCCATGGCCTTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp ATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCTCGGGGTGCCTCTGCCATaGTCGAGACACAAGCCCACA +
Preference number: 4 (lower is better)
Translates to: ISLPDLSQKELMVSTLWLGVPLP*SRHKPT
Trigger: TGTGGGCTTGTGTCTCGAGCATGGCAGAGGCACCCC...GAGCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
CDS-3UTR GCA 90 bp CAGCCTCTGCTGCTGTGTACTTTGAGTCTGACCTTTCCCAAAAAGAACTCATGGCGAGATGGCCACTTCTaGAGAGGAGGCCGAGGTTCC +
Preference number: 4 (lower is better)
Translates to: QPLLLCTLSLTFPKKNSWRDGHF*RGGRGS
Trigger: GGAACCTCGGCCTCCTCTGCAGAAGTGGCCATCTCG...CCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACACAGCAGCAGAGGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGATGGTTCCGAGACCCATCTGAACTaGTGGGTTTGGGCGTTATCC +
Preference number: 4 (lower is better)
Translates to: GLYTRSSSLWCRGGTDGSETHLN*WVWALS
Trigger: GGATAACGCCCAAACCCACCAGTTCAGATGGGTCTC...GGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp TTCTCCTGCCTCAGCCTCTTGCGTGTATGTGTGGGCTTGTTTTTGGGCACAGAGGAGACCCATCTGAACTaGTGGGTTTGGGCGTTATCC +
Preference number: 4 (lower is better)
Translates to: FSCLSLLRVCVGLFLGTEETHLN*WVWALS
Trigger: GGATAACGCCCAAACCCACCAGTTCAGATGGGTCTC...CTCTGTGCCCAAAAACAAGCCCACACATACACGCAAGAGGCTGAGGCAGGAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp ACAGGAGCCAAGTTACCAGAGGACCCGGACAAACTGCTGAGTCATGTGCAGTTCGAGACCCATCTGAACTaGTGGGTTTGGGCGTTATCC +
Preference number: 4 (lower is better)
Translates to: TGAKLPEDPDKLLSHVQFETHLN*WVWALS
Trigger: GGATAACGCCCAAACCCACCAGTTCAGATGGGTCTC...GAACTGCACATGACTCAGCAGTTTGTCCGGGTCCTCTGGTAACTTGGCTCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp GGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGATGGTTCCGTCCCGCAGTGTGTTTaGGGAGACATGAGCAGACAT +
Preference number: 4 (lower is better)
Translates to: GLYTRSSSLWCRGGTDGSVPQCV*GDMSRH
Trigger: ATGTCTGCTCATGTCTCCCCAAACACACTGCGGGAC...GGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GCTGCCTCAATGAAGAACCTCCATCTTGATGCAGGGCTTCTTGGCACAGCCTCTGTCCCGCAGTGTGTTTaGGGAGACATGAGCAGACAT +
Preference number: 4 (lower is better)
Translates to: AASMKNLHLDAGLLGTASVPQCV*GDMSRH
Trigger: ATGTCTGCTCATGTCTCCCCAAACACACTGCGGGAC...AGAGGCTGTGCCAAGAAGCCCTGCATCAAGATGGAGGTTCTTCATTGAGGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp AACTGGCCTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTAGAGGGGCGTGGAAGTaGATCTGCCTCGCCAGGTGC +
Preference number: 4 (lower is better)
Translates to: NWPLLWDSNCGISENSQARGAWK*ICLARC
Trigger: GCACCTGGCGAGGCAGATCCACTTCCACGCCCCTCT...AGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGGCCAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp ACCTTGTGGCTTATAAACCCCCATAAAGGGCAACTTCAAGGTCACGCCCTTAAAAGAGGGGCGTGGAAGTaGATCTGCCTCGCCAGGTGC +
Preference number: 4 (lower is better)
Translates to: TLWLINPHKGQLQGHALKRGAWK*ICLARC
Trigger: GCACCTGGCGAGGCAGATCCACTTCCACGCCCCTCT...TTTAAGGGCGTGACCTTGAAGTTGCCCTTTATGGGGGTTTATAAGCCACAAGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp TCGACCTTGTGGCTTATAAACCCCCATAAAGGGCAACTTCAAGGTCACGCCCTTCCAAGAGCGTTCAGCTaGCTGAGGTCCTGCTACCAG +
Preference number: 4 (lower is better)
Translates to: STLWLINPHKGQLQGHALPRAFS*LRSCYQ
Trigger: CTGGTAGCAGGACCTCAGCCAGCTGAACGCTCTTGG...AAGGGCGTGACCTTGAAGTTGCCCTTTATGGGGGTTTATAAGCCACAAGGTCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp TCGACCTTGTGGCTTATAAACCCCCATAAAGGGCAACTTCAAGGTCACGCCCTTGATGGAGCTGAGGGATaGTCTTCCTGGCCCTGCCTT +
Preference number: 4 (lower is better)
Translates to: STLWLINPHKGQLQGHALDGAEG*SSWPCL
Trigger: AAGGCAGGGCCAGGAAGACCATCCCTCAGCTCCATC...AAGGGCGTGACCTTGAAGTTGCCCTTTATGGGGGTTTATAAGCCACAAGGTCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp CCCATAAAGGGCAACTTCAAGGTCACGCCCTTAAAGGAAAGGAGTGGTCCTCTATCTGAGGGAAGGCACTaGGATGGAGCTGAGGGATGG +
Preference number: 4 (lower is better)
Translates to: PIKGNFKVTPLKERSGPLSEGRH*DGAEGW
Trigger: CCATCCCTCAGCTCCATCCCAGTGCCTTCCCTCAGA...TAGAGGACCACTCCTTTCCTTTAAGGGCGTGACCTTGAAGTTGCCCTTTATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp GCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTAGGAAGTCAAAGTCACTaGGCTCTTCTTCAGGCAGAT +
Preference number: 4 (lower is better)
Translates to: AKARVFTHVPLPYGAGEVGSQSH*ALLQAD
Trigger: ATCTGCCTGAAGAAGAGCCCAGTGACTTTGACTTCC...TACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GCAGCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGCCAGAGGAAGAGCCTTaGCCTTGTCTTGTTCATTTT +
Preference number: 4 (lower is better)
Translates to: AAKARVFTHVPLPYGAGEPEEEP*PCLVHF
Trigger: AAAATGAACAAGACAAGGCCAAGGCTCTTCCTCTGG...CTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GGGAATGCTGGTGTTGACAGTTCTCAGGGCTCCCAGGAAGCCTCTGCTGCCTCACTGTTCATCCAGGTGTaGTTCCTTAGTAAAGAGCAC +
Preference number: 4 (lower is better)
Translates to: GNAGVDSSQGSQEASAASLFIQV*FLSKEH
Trigger: GTGCTCTTTACTAAGGAACCACACCTGGATGAACAG...TGAGGCAGCAGAGGCTTCCTGGGAGCCCTGAGAACTGTCAACACCAGCATTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp CTTAAGGCCATGGAACTGTGGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGAGAGAATCCCCATTGCTaGCCGCCAGCCAGAGGTATT +
Preference number: 4 (lower is better)
Translates to: LKAMELWAPVCLQEPKQGENPHC*PPARGI
Trigger: AATACCTCTGGCTGGCGGCCAGCAATGGGGATTCTC...TCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCACAGTTCCATGGCCTTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GTATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCTGGCTGGCTCCGAGATaGCCACTTCTGCAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: VYPYLTFPKKNSWSPLSGWLAPR*PLLQRR
Trigger: CCTCCTCTGCAGAAGTGGCCATCTCGGAGCCAGCCA...GCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATATAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
CDS-3UTR CCA 90 bp AACTGGCCTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTTGGGGGCACCATGGCTaGCTCCGAGATGGCCACTTC +
Preference number: 4 (lower is better)
Translates to: NWPLLWDSNCGISENSQAWGHHG*LRDGHF
Trigger: GAAGTGGCCATCTCGGAGCCAGCCATGGTGCCCCCA...AGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGGCCAGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp TGGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGAGTAAGGTTCTTTCTATGGTCTCAGGGAGCTATCTaGGGGAAGGCACTGGGATGG +
Preference number: 4 (lower is better)
Translates to: WAPVCLQEPKQGVRFFLWSQGAI*GKALGW
Trigger: CCATCCCAGTGCCTTCCCTCAGATAGCTCCCTGAGA...CCATAGAAAGAACCTTACTCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp CTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTCCATCTTGCGTGGAAGTGGATCTaGCTCGCCAGGTGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: LFFGTQIVVSLRTLRLHLAWKWI*LARCKA
Trigger: GGCCTTGCACCTGGCGAGGCAGATCCACTTCCACGC...AAGATGGAGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp AACTGGCCTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTACAGGGTGTTCAGGCTaGAGAGGGAGGGGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: NWPLLWDSNCGISENSQATGCSG*RGRGWR
Trigger: TCTCCAGCCCCTCCCTCTGCAGCCTGAACACCCTGT...AGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGGCCAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp TGTACTTTGAGTCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCACAGGGTGTTCAGGCTaGAGAGGGAGGGGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: CTLSLTFPKKNSWSPLSGTGCSG*RGRGWR
Trigger: TCTCCAGCCCCTCCCTCTGCAGCCTGAACACCCTGT...GCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp ATAAACCCCCATAAAGGGCAACTTCAAGGTCACGCCCTTAAAGGAAAGGAGTGGTTCCTGGCCCTGCCTTaGTTCCCTGAGGCCAGTGTT +
Preference number: 4 (lower is better)
Translates to: INPHKGQLQGHALKGKEWFLALP*FPEASV
Trigger: AACACTGGCCTCAGGGAACCAAGGCAGGGCCAGGAA...CCACTCCTTTCCTTTAAGGGCGTGACCTTGAAGTTGCCCTTTATGGGGGTTTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp CTACACAGGACAGAATTTTCAAGGAAGCACACGGCCATCCGACTGAAGACATTTGAGGGATGGTCTTCCTaGCCCTGCCTTGGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: LHRTEFSRKHTAIRLKTFEGWSS*PCLGSL
Trigger: CAGGGAACCAAGGCAGGGCCAGGAAGACCATCCCTC...AAATGTCTTCAGTCGGATGGCCGTGTGCTTCCTTGAAAATTCTGTCCTGTGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp CAAGTAGGTCAGTGTTTTCTGGCTCCTCCCAAGAACGCTGTATATTATGTGGGCTCTGAGGGAAGGCACTaGGATGGAGCTGAGGGATGG +
Preference number: 4 (lower is better)
Translates to: QVGQCFLAPPKNAVYYVGSEGRH*DGAEGW
Trigger: CCATCCCTCAGCTCCATCCCAGTGCCTTCCCTCAGA...GCCCACATAATATACAGCGTTCTTGGGAGGAGCCAGAAAACACTGACCTACTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp GCTGCTGTGTACTTTGAGTCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTAACATGCCTCCGAAGTaGGGAGTGTGGGTGCCACCA +
Preference number: 4 (lower is better)
Translates to: AAVYFESDLSQKELMVSTNMPPK*GVWVPP
Trigger: TGGTGGCACCCACACTCCTCACTTCGGAGGCATGTT...AGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACACAGCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp GCTGCTGTGTACTTTGAGTCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTTCTCAGGGAGCTATCTaGGGGAAGGCACTGGGATGG +
Preference number: 4 (lower is better)
Translates to: AAVYFESDLSQKELMVSTSQGAI*GKALGW
Trigger: CCATCCCAGTGCCTTCCCTCAGATAGCTCCCTGAGA...AGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACACAGCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp CAAGTAGGTCAGTGTTTTCTGGCTCCTCCCAAGAACGCTGTATATTATGTGGGCCTCTCGCTCAGGGTCTaGCAAAGAGCCTGGACTTTG +
Preference number: 4 (lower is better)
Translates to: QVGQCFLAPPKNAVYYVGLSLRV*QRAWTL
Trigger: CAAAGTCCAGGCTCTTTGTCAGACCCTGAGCGAGAG...GCCCACATAATATACAGCGTTCTTGGGAGGAGCCAGAAAACACTGACCTACTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR GCA 90 bp ATGCAGGGCTTCTTGGCACAGCCTCTGCTGCTGTGTACTTTGAGTCTGACCTTTTTCATTCCCCATAGCTaGTGCCTGCTGGTAGCACTT +
Preference number: 4 (lower is better)
Translates to: MQGFLAQPLLLCTLSLTFFIPHS*CLLVAL
Trigger: AAGTGCTACCAGCAGGCAGCAGCTATGGGGAATGAA...AAAGGTCAGACTCAAAGTACACAGCAGCAGAGGCTGTGCCAAGAAGCCCTGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp CCTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTCCATCTCCAAGAGCGTTCAGCTaGCTGAGGTCCTGCTACCAG +
Preference number: 4 (lower is better)
Translates to: PLLWDSNCGISENSQAPSPRAFS*LRSCYQ
Trigger: CTGGTAGCAGGACCTCAGCCAGCTGAACGCTCTTGG...AGATGGAGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp AACTGGCCTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTTTCCTGGCCCTGCCTTaGTTCCCTGAGGCCAGTGTT +
Preference number: 4 (lower is better)
Translates to: NWPLLWDSNCGISENSQAFLALP*FPEASV
Trigger: AACACTGGCCTCAGGGAACCAAGGCAGGGCCAGGAA...AGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGGCCAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp TTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGATGGTTCCTGGGGAAAGAGTTGCTGAATaGAAGTCACAGCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: FTHVPLPYGAGEVLMVPGERVAE*KSQPPP
Trigger: TGGAGGAGGCTGTGACTTCCATTCAGCAACTCTTTC...CCCAGGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp GTATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCACCCCAAGGAAAGCTTaGGCCTCTGTCAAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: VYPYLTFPKKNSWSPLSGTPRKA*ASVKPE
Trigger: CTCTGGCTTGACAGAGGCCCAAGCTTTCCTTGGGGT...GCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATATAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
CDS-3UTR TCA 90 bp CCTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTCCATCTTGTCTGAGACCCATCTaGACTGGTGGGTTTGGGCGT +
Preference number: 4 (lower is better)
Translates to: PLLWDSNCGISENSQAPSCLRPI*TGGFGR
Trigger: ACGCCCAAACCCACCAGTTCAGATGGGTCTCAGACA...AGATGGAGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR TCA 90 bp CTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTCCATCTTAACATGCCTCCGAAGTaGGGAGTGTGGGTGCCACCA +
Preference number: 4 (lower is better)
Translates to: LFFGTQIVVSLRTLRLHLNMPPK*GVWVPP
Trigger: TGGTGGCACCCACACTCCTCACTTCGGAGGCATGTT...AAGATGGAGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp CTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTCCATCTTTTCCTGGCCCTGCCTTaGTTCCCTGAGGCCAGTGTT +
Preference number: 4 (lower is better)
Translates to: LFFGTQIVVSLRTLRLHLFLALP*FPEASV
Trigger: AACACTGGCCTCAGGGAACCAAGGCAGGGCCAGGAA...AAGATGGAGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
3UTR CAA 72 bp CAGGGCTTCTTGGCACAGCCTCTGCTGCTGTGTACTTaGAGTCTGACCTTTCCCAAAAAGAACTCATGGTCT +
Preference number: 4 (lower is better)
Translates to: QGFLAQPLLLCT*SLTFPKKNSWS
Trigger: AGACCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACACAGCAGCAGAGGCTGTGCCAAGAAGCCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp ATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCTCTTTGCAACAGACACCTaGCATAGCGGTACTGAGCCA +
Preference number: 4 (lower is better)
Translates to: ISLPDLSQKELMVSTLWLFATDT*HSGTEP
Trigger: TGGCTCAGTACCGCTATGCCAGGTGTCTGTTGCAAA...GAGCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
CDS-3UTR TCA 90 bp TTATTTTCTACAGCCTACACAGGACAGAATTTTCAAGGAAGCACACGGCCATCCAACCACTCTCTACTCTaGCTGCATCCCATCCACCCT +
Preference number: 4 (lower is better)
Translates to: LFSTAYTGQNFQGSTRPSNHSLL*LHPIHP
Trigger: AGGGTGGATGGGATGCAGTCAGAGTAGAGAGTGGTT...GGATGGCCGTGTGCTTCCTTGAAAATTCTGTCCTGTGTAGGCTGTAGAAAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR GCA 90 bp AACTGGCCTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTTTCATTCCCCATAGCTaGTGCCTGCTGGTAGCACTT +
Preference number: 4 (lower is better)
Translates to: NWPLLWDSNCGISENSQAFIPHS*CLLVAL
Trigger: AAGTGCTACCAGCAGGCAGCAGCTATGGGGAATGAA...AGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGGCCAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp TGGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGAGTAAGGTTCTTTCTATGGGGAAGTCAAAGTCACTaGGCTCTTCTTCAGGCAGAT +
Preference number: 4 (lower is better)
Translates to: WAPVCLQEPKQGVRFFLWGSQSH*ALLQAD
Trigger: ATCTGCCTGAAGAAGAGCCCAGTGACTTTGACTTCC...CCATAGAAAGAACCTTACTCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp ACCTTGTGGCTTATAAACCCCCATAAAGGGCAACTTCAAGGTCACGCCCTTAAACTTTATGAGCAAGGATaGGTCCCTGACCCCACTGAA +
Preference number: 4 (lower is better)
Translates to: TLWLINPHKGQLQGHALKLYEQG*VPDPTE
Trigger: TTCAGTGGGGTCAGGGACCCATCCTTGCTCATAAAG...TTTAAGGGCGTGACCTTGAAGTTGCCCTTTATGGGGGTTTATAAGCCACAAGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR GCA 90 bp ACACAGGACAGAATTTTCAAGGAAGCACACGGCCATCCGACTGAAGACATTTCTACTCTCTACTCTGACTaGATCCCATCCACCCTTTTC +
Preference number: 4 (lower is better)
Translates to: TQDRIFKEAHGHPTEDISTLYSD*IPSTLF
Trigger: GAAAAGGGTGGATGGGATGCAGTCAGAGTAGAGAGT...AGAAATGTCTTCAGTCGGATGGCCGTGTGCTTCCTTGAAAATTCTGTCCTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp GTATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCCCAGAGGAAGAGCCTTaGCCTTGTCTTGTTCATTTT +
Preference number: 4 (lower is better)
Translates to: VYPYLTFPKKNSWSPLSGPEEEP*PCLVHF
Trigger: AAAATGAACAAGACAAGGCCAAGGCTCTTCCTCTGG...GCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATATAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
CDS-3UTR CCA 90 bp TGTACTTTGAGTCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCGAAAGAGTTGCTGAATaGAAGTCACAGCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: CTLSLTFPKKNSWSPLSGERVAE*KSQPPP
Trigger: TGGAGGAGGCTGTGACTTCCATTCAGCAACTCTTTC...GCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGACTCAAAGTACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp TTGAGTCAGTTTTTCACTGTAGGCCTTGAACTCAAGACAATTCTCCTGCCTCAGTTTGCAACAGACACCTaGCATAGCGGTACTGAGCCA +
Preference number: 4 (lower is better)
Translates to: LSQFFTVGLELKTILLPQFATDT*HSGTEP
Trigger: TGGCTCAGTACCGCTATGCCAGGTGTCTGTTGCAAA...CTGAGGCAGGAGAATTGTCTTGAGTTCAAGGCCTACAGTGAAAAACTGACTCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
3UTR CAA 72 bp CTGCTTGTCTCTGCCTCCAGTGCGTTGGGATTGAAGTaGCACACCACTATACCTGTCCAGTTTACTACTTAT +
Preference number: 4 (lower is better)
Translates to: LLVSASSALGLK*HTTIPVQFTTY
Trigger: ATAAGTAGTAAACTGGACAGGTATAGTGGTGTGCAACTTCAATCCCAACGCACTGGAGGCAGAGACAAGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
3UTR CAA 72 bp AAAGATCTGCTTGTCTCTGCCTCCAGTGCGTTGGGATaGAAGTTGCACACCACTATACCTGTCCAGTTTACT +
Preference number: 4 (lower is better)
Translates to: KDLLVSASSALG*KLHTTIPVQFT
Trigger: AGTAAACTGGACAGGTATAGTGGTGTGCAACTTCAATCCCAACGCACTGGAGGCAGAGACAAGCAGATCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp TTATTTTCTACAGCCTACACAGGACAGAATTTTCAAGGAAGCACACGGCCATCCGGAAGTCAAAGTCACTaGGCTCTTCTTCAGGCAGAT +
Preference number: 4 (lower is better)
Translates to: LFSTAYTGQNFQGSTRPSGSQSH*ALLQAD
Trigger: ATCTGCCTGAAGAAGAGCCCAGTGACTTTGACTTCC...GGATGGCCGTGTGCTTCCTTGAAAATTCTGTCCTGTGTAGGCTGTAGAAAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp ACACAGGACAGAATTTTCAAGGAAGCACACGGCCATCCGACTGAAGACATTTCTCCAGAGGAAGAGCCTTaGCCTTGTCTTGTTCATTTT +
Preference number: 4 (lower is better)
Translates to: TQDRIFKEAHGHPTEDISPEEEP*PCLVHF
Trigger: AAAATGAACAAGACAAGGCCAAGGCTCTTCCTCTGG...AGAAATGTCTTCAGTCGGATGGCCGTGTGCTTCCTTGAAAATTCTGTCCTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp AACTGGCCTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTCTGTTCATCCAGGTGTaGTTCCTTAGTAAAGAGCAC +
Preference number: 4 (lower is better)
Translates to: NWPLLWDSNCGISENSQALFIQV*FLSKEH
Trigger: GTGCTCTTTACTAAGGAACCACACCTGGATGAACAG...AGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGGCCAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CCA 90 bp TACTACTTATTATCCTTCAGTTCACATGCAAATACCATGAGAGTAAAGAACCACCCACCATGCCACATCTaGTCTACCTACCCAAGAGAA +
Preference number: 4 (lower is better)
Translates to: YYLLSFSSHANTMRVKNHPPCHI*STYPRE
Trigger: TTCTCTTGGGTAGGTAGACCAGATGTGGCATGGTGG...GTGGTTCTTTACTCTCATGGTATTTGCATGTGAACTGAAGGATAATAAGTAGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CCA 90 bp TACTACTTATTATCCTTCAGTTCACATGCAAATACCATGAGAGTAAAGAACCACGAAAGAGTTGCTGAATaGAAGTCACAGCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: YYLLSFSSHANTMRVKNHERVAE*KSQPPP
Trigger: TGGAGGAGGCTGTGACTTCCATTCAGCAACTCTTTC...GTGGTTCTTTACTCTCATGGTATTTGCATGTGAACTGAAGGATAATAAGTAGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS GCA 90 bp GGTCCTGCTACCAGAGGGGCGTGGAAGTGGATCTGCCTCGCCAGGTaGAAGGCCAGCACCGCCAGAGTGCCCCATGAGATGGCGTCCCGC +
Preference number: 5 (lower is better)
Translates to: GPATRGAWKWICLAR*KASTARVPHEMASR
Trigger: GCGGGACGCCATCTCATGGGGCACTCTGGCGGTGCTGGCCTTGCACCTGGCGAGGCAGATCCACTTCCACGCCCCTCTGGTAGCAGGACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS GCA 90 bp GCTGGAGAAAGACTTCAGTCCTGTCGTGGCCAGGTGGCTGGGCCCTaGTGCTTCCACGTTAAAGAGGGTCCGAAGCCTCTCCCGGGCGGG +
Preference number: 5 (lower is better)
Translates to: AGERLQSCRGQVAGP*CFHVKEGPKPLPGG
Trigger: CCCGCCCGGGAGAGGCTTCGGACCCTCTTTAACGTGGAAGCAGCAGGGCCCAGCCACCTGGCCACGACAGGACTGAAGTCTTTCTCCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS TCA 90 bp GAGAGGAAGCGGTACAGGGGACTGTGCCAAGAGCGTTCAGCTGGCTaGGGTCCTGCTACCAGAGGGGCGTGGAAGTGGATCTGCCTCGCC +
Preference number: 5 (lower is better)
Translates to: ERKRYRGLCQERSAG*GPATRGAWKWICLA
Trigger: GGCGAGGCAGATCCACTTCCACGCCCCTCTGGTAGCAGGACCTCAGCCAGCTGAACGCTCTTGGCACAGTCCCCTGTACCGCTTCCTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS GCA 90 bp GGAAGTGGATCTGCCTCGCCAGGTGCAAGGCCAGCACCGCCAGAGTaGCCCATGAGATGGCGTCCCGCAGTGTGTTTGGGGAGACATGAG +
Preference number: 5 (lower is better)
Translates to: GSGSASPGARPAPPE*PMRWRPAVCLGRHE
Trigger: CTCATGTCTCCCCAAACACACTGCGGGACGCCATCTCATGGGGCACTCTGGCGGTGCTGGCCTTGCACCTGGCGAGGCAGATCCACTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS GCA 90 bp GCGGTACAGGGGACTGTGCCAAGAGCGTTCAGCTGGCTGAGGTCCTaGTACCAGAGGGGCGTGGAAGTGGATCTGCCTCGCCAGGTGCAA +
Preference number: 5 (lower is better)
Translates to: AVQGTVPRAFSWLRS*YQRGVEVDLPRQVQ
Trigger: TTGCACCTGGCGAGGCAGATCCACTTCCACGCCCCTCTGGTAGCAGGACCTCAGCCAGCTGAACGCTCTTGGCACAGTCCCCTGTACCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS GCA 90 bp GGAGAAAGACTTCAGTCCTGTCGTGGCCAGGTGGCTGGGCCCTGCTaGTTCCACGTTAAAGAGGGTCCGAAGCCTCTCCCGGGCGGGTTC +
Preference number: 5 (lower is better)
Translates to: GERLQSCRGQVAGPC*FHVKEGPKPLPGGF
Trigger: GAACCCGCCCGGGAGAGGCTTCGGACCCTCTTTAACGTGGAAGCAGCAGGGCCCAGCCACCTGGCCACGACAGGACTGAAGTCTTTCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS CCA 90 bp GCCTCGCCAGGTGCAAGGCCAGCACCGCCAGAGTGCCCCATGAGATaGCGTCCCGCAGTGTGTTTGGGGAGACATGAGCAGACATCCAGT +
Preference number: 5 (lower is better)
Translates to: ASPGARPAPPECPMR*RPAVCLGRHEQTSS
Trigger: ACTGGATGTCTGCTCATGTCTCCCCAAACACACTGCGGGACGCCATCTCATGGGGCACTCTGGCGGTGCTGGCCTTGCACCTGGCGAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS TCA 90 bp GATCTGCCTCGCCAGGTGCAAGGCCAGCACCGCCAGAGTGCCCCATaGGATGGCGTCCCGCAGTGTGTTTGGGGAGACATGAGCAGACAT +
Preference number: 5 (lower is better)
Translates to: DLPRQVQGQHRQSAP*DGVPQCVWGDMSRH
Trigger: ATGTCTGCTCATGTCTCCCCAAACACACTGCGGGACGCCATCTCATGGGGCACTCTGGCGGTGCTGGCCTTGCACCTGGCGAGGCAGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS CCA 90 bp CAGAGGGAGGGGCTGGAGAAAGACTTCAGTCCTGTCGTGGCCAGGTaGCTGGGCCCTGCTGCTTCCACGTTAAAGAGGGTCCGAAGCCTC +
Preference number: 5 (lower is better)
Translates to: QREGLEKDFSPVVAR*LGPAASTLKRVRSL
Trigger: GAGGCTTCGGACCCTCTTTAACGTGGAAGCAGCAGGGCCCAGCCACCTGGCCACGACAGGACTGAAGTCTTTCTCCAGCCCCTCCCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 90 bp AGGCCAGTGTTCCTGGGAGCTGGGCAGTCAGACCTGGGAAGAACATaGCTCCGAAGTGAGGAGTGTGGGTGCCACCAGGAAGAGGAGAGG +
Preference number: 5 (lower is better)
Translates to: RPVFLGAGQSDLGRT*LRSEECGCHQEEER
Trigger: CCTCTCCTCTTCCTGGTGGCACCCACACTCCTCACTTCGGAGGCATGTTCTTCCCAGGTCTGACTGCCCAGCTCCCAGGAACACTGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS CCA 90 bp AGAGGAGAGGAAGCGGTACAGGGGACTGTGCCAAGAGCGTTCAGCTaGCTGAGGTCCTGCTACCAGAGGGGCGTGGAAGTGGATCTGCCT +
Preference number: 5 (lower is better)
Translates to: RGEEAVQGTVPRAFS*LRSCYQRGVEVDLP
Trigger: AGGCAGATCCACTTCCACGCCCCTCTGGTAGCAGGACCTCAGCCAGCTGAACGCTCTTGGCACAGTCCCCTGTACCGCTTCCTCTCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS CCA 90 bp ACGAGGCTCCTTTCCAAGGATGGTATAGTCCTGCTGGGGGCACCATaGCTGGCTCCGAGATGGCCACTTCTGCAGAGGAGGCCGAGGTTC +
Preference number: 5 (lower is better)
Translates to: TRLLSKDGIVLLGAP*LAPRWPLLQRRPRF
Trigger: GAACCTCGGCCTCCTCTGCAGAAGTGGCCATCTCGGAGCCAGCCATGGTGCCCCCAGCAGGACTATACCATCCTTGGAAAGGAGCCTCGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp CGCAGCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGACGAGGTTCCCAGTGCTaGAGGCATGAGGGAGGCCTG +
Preference number: 5 (lower is better)
Translates to: RSQSPGLYTRSSSLWCRGRGSQC*RHEGGL
Trigger: CAGGCCTCCCTCATGCCTCAAGCACTGGGAACCTCG...TCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGCTGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp GGGAATGCTGGTGTTGACAGTTCTCAGGGCTCCCAGGAAGCCTCTGCTGCCTCATCCATCCACAGCACTTaGGGTCCCTGCTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: GNAGVDSSQGSQEASAASSIHST*GPCSSL
Trigger: CAAAGAGGAGCAGGGACCCAAAGTGCTGTGGATGGA...TGAGGCAGCAGAGGCTTCCTGGGAGCCCTGAGAACTGTCAACACCAGCATTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS GCA 90 bp TGGGCCTCGGCTGCCTTTGCCTGGGATGCGAAGTCTCGGCTAGCATaGAGGAAGTCAAAGTCACTGGGCTCTTCTTCAGGCAGATTCAGA +
Preference number: 5 (lower is better)
Translates to: WASAAFAWDAKSRLA*RKSKSLGSSSGRFR
Trigger: TCTGAATCTGCCTGAAGAAGAGCCCAGTGACTTTGACTTCCTGCATGCTAGCCGAGACTTCGCATCCCAGGCAAAGGCAGCCGAGGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS CCA 90 bp AGATTCAGAAGTCCAGATCTCAGGGAGCTATCTGAGGGAAGGCACTaGGATGGAGCTGAGGGATGGTCTTCCTGGCCCTGCCTTGGTTCC +
Preference number: 5 (lower is better)
Translates to: RFRSPDLRELSEGRH*DGAEGWSSWPCLGS
Trigger: GGAACCAAGGCAGGGCCAGGAAGACCATCCCTCAGCTCCATCCCAGTGCCTTCCCTCAGATAGCTCCCTGAGATCTGGACTTCTGAATCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS GCA 90 bp GGGGGTGCCTCTGCCATGCTCGAGACACAAGCCCACATTGTACTGTaGTTTGCTGTAGCCACGGTCTGCGGCTTTCTGGAAGTAGGAAAA +
Preference number: 5 (lower is better)
Translates to: GGASAMLETQAHIVL*FAVATVCGFLEVGK
Trigger: TTTTCCTACTTCCAGAAAGCCGCAGACCGTGGCTACAGCAAAGCACAGTACAATGTGGGCTTGTGTCTCGAGCATGGCAGAGGCACCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp TCCCTCCCAGCTCCCAGGAGAGCAGATGCTAGAGTGACTAAGACAGAACTCAAGCGTCCCGCAGTGTGTTaGGGGAGACATGAGCAGACA +
Preference number: 5 (lower is better)
Translates to: SLPAPRRADARVTKTELKRPAVC*GRHEQT
Trigger: TGTCTGCTCATGTCTCCCCAAACACACTGCGGGACG...CTTGAGTTCTGTCTTAGTCACTCTAGCATCTGCTCTCCTGGGAGCTGGGAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CAA 90 bp GCAGCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGTCTGTCCCCAGGAAGTaGAAAGTGATGGCTACACTG +
Preference number: 5 (lower is better)
Translates to: AAKARVFTHVPLPYGAGESVPRK*KVMATL
Trigger: CAGTGTAGCCATCACTTTCAACTTCCTGGGGACAGA...CTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 90 bp TGCCTCTGCCATGCTCGAGACACAAGCCCACATTGTACTGTGCTTTaGTGTAGCCACGGTCTGCGGCTTTCTGGAAGTAGGAAAAGGCTG +
Preference number: 5 (lower is better)
Translates to: CLCHARDTSPHCTVL*CSHGLRLSGSRKRL
Trigger: CAGCCTTTTCCTACTTCCAGAAAGCCGCAGACCGTGGCTACAGCAAAGCACAGTACAATGTGGGCTTGTGTCTCGAGCATGGCAGAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp TTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGATGGTTCCTGGGTCCATCCACAGCACTTaGGGTCCCTGCTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: FTHVPLPYGAGEVLMVPGSIHST*GPCSSL
Trigger: CAAAGAGGAGCAGGGACCCAAAGTGCTGTGGATGGA...CCCAGGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp GCAGCCAAAGCCCGGGTCTTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGACTGAGCTGAAAGAGTaGCTGAATGGAAGTCACAGC +
Preference number: 5 (lower is better)
Translates to: AAKARVFTHVPLPYGAGETELKE*LNGSHS
Trigger: GCTGTGACTTCCATTCAGCAACTCTTTCAGCTCAGT...CTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAAGACCCGGGCTTTGGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp ATATCCCTACCTGACCTTTCCCAAAAAGAACTCATGGTCTCCACTCTCTGGCTCCGAGGTTCCCAGTGCTaGAGGCATGAGGGAGGCCTG +
Preference number: 5 (lower is better)
Translates to: ISLPDLSQKELMVSTLWLRGSQC*RHEGGL
Trigger: CAGGCCTCCCTCATGCCTCAAGCACTGGGAACCTCG...GAGCCAGAGAGTGGAGACCATGAGTTCTTTTTGGGAAAGGTCAGGTAGGGATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025314.7
CDS GCA 90 bp GCTCTGAGAATCCCCATTGCTGGCCGCCAGCCAGAGGTATTTTACTaGTCTCTGTTCATCCAGGTGTGGTTCCTTAGTAAAGAGCACCCC +
Preference number: 5 (lower is better)
Translates to: ALRIPIAGRQPEVFY*SLFIQVWFLSKEHP
Trigger: GGGGTGCTCTTTACTAAGGAACCACACCTGGATGAACAGAGAGCAGTAAAATACCTCTGGCTGGCGGCCAGCAATGGGGATTCTCAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS CCA 90 bp GGCCGCCAGCCAGAGGTATTTTACTGCTCTCTGTTCATCCAGGTGTaGTTCCTTAGTAAAGAGCACCCCAAGGAAAGCTTGGGCCTCTGT +
Preference number: 5 (lower is better)
Translates to: GRQPEVFYCSLFIQV*FLSKEHPKESLGLC
Trigger: ACAGAGGCCCAAGCTTTCCTTGGGGTGCTCTTTACTAAGGAACCACACCTGGATGAACAGAGAGCAGTAAAATACCTCTGGCTGGCGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp TCGACCTTGTGGCTTATAAACCCCCATAAAGGGCAACTTCAAGGTCACGCCCTTGGTCCCTGCTCCTCTTaGAACCGTGGGAACCTGATC +
Preference number: 5 (lower is better)
Translates to: STLWLINPHKGQLQGHALGPCSS*NRGNLI
Trigger: GATCAGGTTCCCACGGTTCAAAGAGGAGCAGGGACC...AAGGGCGTGACCTTGAAGTTGCCCTTTATGGGGGTTTATAAGCCACAAGGTCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CAA 90 bp GATTGGGTGTGTCTCACCATGCCCAGCAGCCTGGTGGTTCTTAAGGCCATGGAACAAAGAGCCTGGACTTaGCAACAGACACCTGGCATA +
Preference number: 5 (lower is better)
Translates to: DWVCLTMPSSLVVLKAMEQRAWT*QQTPGI
Trigger: TATGCCAGGTGTCTGTTGCAAAGTCCAGGCTCTTTG...TTCCATGGCCTTAAGAACCACCAGGCTGCTGGGCATGGTGAGACACACCCAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp TGGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGAGTAAGGTTCTTTCTATGGGGTCCCTGCTCCTCTTaGAACCGTGGGAACCTGATC +
Preference number: 5 (lower is better)
Translates to: WAPVCLQEPKQGVRFFLWGPCSS*NRGNLI
Trigger: GATCAGGTTCCCACGGTTCAAAGAGGAGCAGGGACC...CCATAGAAAGAACCTTACTCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp CAAGTAGGTCAGTGTTTTCTGGCTCCTCCCAAGAACGCTGTATATTATGTGGGCGGTCCCTGCTCCTCTTaGAACCGTGGGAACCTGATC +
Preference number: 5 (lower is better)
Translates to: QVGQCFLAPPKNAVYYVGGPCSS*NRGNLI
Trigger: GATCAGGTTCCCACGGTTCAAAGAGGAGCAGGGACC...GCCCACATAATATACAGCGTTCTTGGGAGGAGCCAGAAAACACTGACCTACTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp AATGCTGGTGTTGACAGTTCTCAGGGCTCCCAGGAAGCCTCTGCTGCCTCAATGACTGAGCTGAAAGAGTaGCTGAATGGAAGTCACAGC +
Preference number: 5 (lower is better)
Translates to: NAGVDSSQGSQEASAASMTELKE*LNGSHS
Trigger: GCTGTGACTTCCATTCAGCAACTCTTTCAGCTCAGT...CATTGAGGCAGCAGAGGCTTCCTGGGAGCCCTGAGAACTGTCAACACCAGCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp TTTACACACGTTCCTCTTCCTTATGGTGCCGGGGAGGTACTGATGGTTCCTGGGTCTGTCCCCAGGAAGTaGAAAGTGATGGCTACACTG +
Preference number: 5 (lower is better)
Translates to: FTHVPLPYGAGEVLMVPGSVPRK*KVMATL
Trigger: CAGTGTAGCCATCACTTTCAACTTCCTGGGGACAGA...CCCAGGAACCATCAGTACCTCCCCGGCACCATAAGGAAGAGGAACGTGTGTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp TGGGCACCAGTCTGTCTTCAGGAACCTAAGCAAGGAGTAAGGTTCTTTCTATGGCACCCCAAGGAAAGCTaGGGCCTCTGTCAAGCCAGA +
Preference number: 5 (lower is better)
Translates to: WAPVCLQEPKQGVRFFLWHPKES*GLCQAR
Trigger: TCTGGCTTGACAGAGGCCCAAGCTTTCCTTGGGGTG...CCATAGAAAGAACCTTACTCCTTGCTTAGGTTCCTGAAGACAGACTGGTGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 90 bp TCTGTGCACCAAGGCCCTTCTCATAGCAAATTCCCAAGTGGAATCTaGTCTGAGAATCCCCATTGCTGGCCGCCAGCCAGAGGTATTTTA +
Preference number: 5 (lower is better)
Translates to: SVHQGPSHSKFPSGI*SENPHCWPPARGIL
Trigger: TAAAATACCTCTGGCTGGCGGCCAGCAATGGGGATTCTCAGAGCAGATTCCACTTGGGAATTTGCTATGAGAAGGGCCTTGGTGCACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp AACTGGCCTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTCGTCCCGCAGTGTGTTaGGGGAGACATGAGCAGACA +
Preference number: 5 (lower is better)
Translates to: NWPLLWDSNCGISENSQARPAVC*GRHEQT
Trigger: TGTCTGCTCATGTCTCCCCAAACACACTGCGGGACG...AGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGGCCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 90 bp AACCTTTATGAGCAAGGATGGGTCCCTGACCCCACTGAACCACCATaGCACATCTGGTCTACCTACCCAAGAGAAGAGAAATCTCTCGTT +
Preference number: 5 (lower is better)
Translates to: NLYEQGWVPDPTEPP*HIWSTYPREEKSLV
Trigger: AACGAGAGATTTCTCTTCTCTTGGGTAGGTAGACCAGATGTGGCATGGTGGTTCAGTGGGGTCAGGGACCCATCCTTGCTCATAAAGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS CCA 90 bp CATAGCAAATTCCCAAGTGGAATCTGCTCTGAGAATCCCCATTGCTaGCCGCCAGCCAGAGGTATTTTACTGCTCTCTGTTCATCCAGGT +
Preference number: 5 (lower is better)
Translates to: HSKFPSGICSENPHC*PPARGILLLSVHPG
Trigger: ACCTGGATGAACAGAGAGCAGTAAAATACCTCTGGCTGGCGGCCAGCAATGGGGATTCTCAGAGCAGATTCCACTTGGGAATTTGCTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp TTGAGTCAGTTTTTCACTGTAGGCCTTGAACTCAAGACAATTCTCCTGCCTCAGCGTCCCGCAGTGTGTTaGGGGAGACATGAGCAGACA +
Preference number: 5 (lower is better)
Translates to: LSQFFTVGLELKTILLPQRPAVC*GRHEQT
Trigger: TGTCTGCTCATGTCTCCCCAAACACACTGCGGGACG...CTGAGGCAGGAGAATTGTCTTGAGTTCAAGGCCTACAGTGAAAAACTGACTCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp CTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTCCATCTTCACCCCAAGGAAAGCTaGGGCCTCTGTCAAGCCAGA +
Preference number: 5 (lower is better)
Translates to: LFFGTQIVVSLRTLRLHLHPKES*GLCQAR
Trigger: TCTGGCTTGACAGAGGCCCAAGCTTTCCTTGGGGTG...AAGATGGAGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 90 bp TCTCATAGCAAATTCCCAAGTGGAATCTGCTCTGAGAATCCCCATTaGTGGCCGCCAGCCAGAGGTATTTTACTGCTCTCTGTTCATCCA +
Preference number: 5 (lower is better)
Translates to: SHSKFPSGICSENPH*WPPARGILLLSVHP
Trigger: TGGATGAACAGAGAGCAGTAAAATACCTCTGGCTGGCGGCCAGCAATGGGGATTCTCAGAGCAGATTCCACTTGGGAATTTGCTATGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp CCCATAAAGGGCAACTTCAAGGTCACGCCCTTAAAGGAAAGGAGTGGTCCTCTAACTGAGCTGAAAGAGTaGCTGAATGGAAGTCACAGC +
Preference number: 5 (lower is better)
Translates to: PIKGNFKVTPLKERSGPLTELKE*LNGSHS
Trigger: GCTGTGACTTCCATTCAGCAACTCTTTCAGCTCAGT...TAGAGGACCACTCCTTTCCTTTAAGGGCGTGACCTTGAAGTTGCCCTTTATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS-3UTR CAA 90 bp AACTGGCCTCTTCTTTGGGACTCAAATTGTGGTATCTCTGAGAACTCTCAGGCTCAAAGAGCCTGGACTTaGCAACAGACACCTGGCATA +
Preference number: 5 (lower is better)
Translates to: NWPLLWDSNCGISENSQAQRAWT*QQTPGI
Trigger: TATGCCAGGTGTCTGTTGCAAAGTCCAGGCTCTTTG...AGCCTGAGAGTTCTCAGAGATACCACAATTTGAGTCCCAAAGAAGAGGCCAGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS-3UTR CAA 90 bp ACACAGGACAGAATTTTCAAGGAAGCACACGGCCATCCGACTGAAGACATTTCTCAGGTACCCAGGAAGTaGAAAGTGATGGCTACACTG +
Preference number: 5 (lower is better)
Translates to: TQDRIFKEAHGHPTEDISQVPRK*KVMATL
Trigger: CAGTGTAGCCATCACTTTCAACTTCCTGGGTACCTG...AGAAATGTCTTCAGTCGGATGGCCGTGTGCTTCCTTGAAAATTCTGTCCTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS GCA 72 bp ACCAGAGGGGCGTGGAAGTGGATCTGCCTCGCCAGGTaGAAGGCCAGCACCGCCAGAGTGCCCCATGAGATG +
Preference number: 6 (lower is better)
Translates to: TRGAWKWICLAR*KASTARVPHEM
Trigger: CATCTCATGGGGCACTCTGGCGGTGCTGGCCTTGCACCTGGCGAGGCAGATCCACTTCCACGCCCCTCTGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS TCA 72 bp CTGCAGAGGAGGCCGAGGTTCCCAGTGCTTGAGGCATaGGGGAGGCCTGAGGCACCAGCCAACAGGGTGTTC +
Preference number: 6 (lower is better)
Translates to: LQRRPRFPVLEA*GRPEAPANRVF
Trigger: GAACACCCTGTTGGCTGGTGCCTCAGGCCTCCCTCATGCCTCAAGCACTGGGAACCTCGGCCTCCTCTGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 72 bp GGGACTGTGCCAAGAGCGTTCAGCTGGCTGAGGTCCTaGTACCAGAGGGGCGTGGAAGTGGATCTGCCTCGC +
Preference number: 6 (lower is better)
Translates to: GTVPRAFSWLRS*YQRGVEVDLPR
Trigger: GCGAGGCAGATCCACTTCCACGCCCCTCTGGTAGCAGGACCTCAGCCAGCTGAACGCTCTTGGCACAGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS GCA 72 bp CTTCAGTCCTGTCGTGGCCAGGTGGCTGGGCCCTGCTaGTTCCACGTTAAAGAGGGTCCGAAGCCTCTCCCG +
Preference number: 6 (lower is better)
Translates to: LQSCRGQVAGPC*FHVKEGPKPLP
Trigger: CGGGAGAGGCTTCGGACCCTCTTTAACGTGGAAGCAGCAGGGCCCAGCCACCTGGCCACGACAGGACTGAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS CCA 72 bp GGTGCAAGGCCAGCACCGCCAGAGTGCCCCATGAGATaGCGTCCCGCAGTGTGTTTGGGGAGACATGAGCAG +
Preference number: 6 (lower is better)
Translates to: GARPAPPECPMR*RPAVCLGRHEQ
Trigger: CTGCTCATGTCTCCCCAAACACACTGCGGGACGCCATCTCATGGGGCACTCTGGCGGTGCTGGCCTTGCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS TCA 72 bp CGGTACAGGGGACTGTGCCAAGAGCGTTCAGCTGGCTaGGGTCCTGCTACCAGAGGGGCGTGGAAGTGGATC +
Preference number: 6 (lower is better)
Translates to: RYRGLCQERSAG*GPATRGAWKWI
Trigger: GATCCACTTCCACGCCCCTCTGGTAGCAGGACCTCAGCCAGCTGAACGCTCTTGGCACAGTCCCCTGTACCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS CCA 72 bp GAAGCGGTACAGGGGACTGTGCCAAGAGCGTTCAGCTaGCTGAGGTCCTGCTACCAGAGGGGCGTGGAAGTG +
Preference number: 6 (lower is better)
Translates to: EAVQGTVPRAFS*LRSCYQRGVEV
Trigger: CACTTCCACGCCCCTCTGGTAGCAGGACCTCAGCCAGCTGAACGCTCTTGGCACAGTCCCCTGTACCGCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS GCA 72 bp AGACTTCAGTCCTGTCGTGGCCAGGTGGCTGGGCCCTaGTGCTTCCACGTTAAAGAGGGTCCGAAGCCTCTC +
Preference number: 6 (lower is better)
Translates to: RLQSCRGQVAGP*CFHVKEGPKPL
Trigger: GAGAGGCTTCGGACCCTCTTTAACGTGGAAGCAGCAGGGCCCAGCCACCTGGCCACGACAGGACTGAAGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 72 bp TTCCTGGGAGCTGGGCAGTCAGACCTGGGAAGAACATaGCTCCGAAGTGAGGAGTGTGGGTGCCACCAGGAA +
Preference number: 6 (lower is better)
Translates to: FLGAGQSDLGRT*LRSEECGCHQE
Trigger: TTCCTGGTGGCACCCACACTCCTCACTTCGGAGGCATGTTCTTCCCAGGTCTGACTGCCCAGCTCCCAGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS GCA 72 bp AAAGCTTGGGCCTCTGTCAAGCCAGAGTCTGCAGCCTaGTTCAGCAGAGAGACTGCCCTCTCTCGCTCAGGG +
Preference number: 6 (lower is better)
Translates to: KAWASVKPESAA*FSRETALSRSG
Trigger: CCCTGAGCGAGAGAGGGCAGTCTCTCTGCTGAAGCAGGCTGCAGACTCTGGCTTGACAGAGGCCCAAGCTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS CCA 72 bp CTTTCCAAGGATGGTATAGTCCTGCTGGGGGCACCATaGCTGGCTCCGAGATGGCCACTTCTGCAGAGGAGG +
Preference number: 6 (lower is better)
Translates to: LSKDGIVLLGAP*LAPRWPLLQRR
Trigger: CCTCCTCTGCAGAAGTGGCCATCTCGGAGCCAGCCATGGTGCCCCCAGCAGGACTATACCATCCTTGGAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS TCA 72 bp CTGAGCCTAGTGAGCGGCAGGGTAGGGGAGGTTGTCTaGGACCCATCTGAACTGGTGGGTTTGGGCGTTATC +
Preference number: 6 (lower is better)
Translates to: LSLVSGRVGEVV*DPSELVGLGVI
Trigger: GATAACGCCCAAACCCACCAGTTCAGATGGGTCTCAGACAACCTCCCCTACCCTGCCGCTCACTAGGCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS TCA 72 bp TGGGCAGTCAGACCTGGGAAGAACATGCCTCCGAAGTaGGGAGTGTGGGTGCCACCAGGAAGAGGAGAGGAA +
Preference number: 6 (lower is better)
Translates to: WAVRPGKNMPPK*GVWVPPGRGEE
Trigger: TTCCTCTCCTCTTCCTGGTGGCACCCACACTCCTCACTTCGGAGGCATGTTCTTCCCAGGTCTGACTGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS TCA 72 bp CTTCAGCAGAGAGACTGCCCTCTCTCGCTCAGGGTCTaGCAAAGAGCCTGGACTTTGCAACAGACACCTGGC +
Preference number: 6 (lower is better)
Translates to: LQQRDCPLSLRV*QRAWTLQQTPG
Trigger: GCCAGGTGTCTGTTGCAAAGTCCAGGCTCTTTGTCAGACCCTGAGCGAGAGAGGGCAGTCTCTCTGCTGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 72 bp GCCACGGTCTGCGGCTTTCTGGAAGTAGGAAAAGGCTaGCGTGTAGTCCCCCGTCTTTATGTTCTCTGTCCC +
Preference number: 6 (lower is better)
Translates to: ATVCGFLEVGKG*RVVPRLYVLCP
Trigger: GGGACAGAGAACATAAAGACGGGGGACTACACGGCAGCCTTTTCCTACTTCCAGAAAGCCGCAGACCGTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 72 bp ATAGCCTTGCTGAGGTCCCTGGGGGTGCCTCTGCCATaGTCGAGACACAAGCCCACATTGTACTGTGCTTTG +
Preference number: 6 (lower is better)
Translates to: IALLRSLGVPLP*SRHKPTLYCAL
Trigger: CAAAGCACAGTACAATGTGGGCTTGTGTCTCGAGCATGGCAGAGGCACCCCCAGGGACCTCAGCAAGGCTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 72 bp CATGCTCGAGACACAAGCCCACATTGTACTGTGCTTTaGTGTAGCCACGGTCTGCGGCTTTCTGGAAGTAGG +
Preference number: 6 (lower is better)
Translates to: HARDTSPHCTVL*CSHGLRLSGSR
Trigger: CCTACTTCCAGAAAGCCGCAGACCGTGGCTACAGCAAAGCACAGTACAATGTGGGCTTGTGTCTCGAGCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 72 bp TCTGCCATGCTCGAGACACAAGCCCACATTGTACTGTaGTTTGCTGTAGCCACGGTCTGCGGCTTTCTGGAA +
Preference number: 6 (lower is better)
Translates to: SAMLETQAHIVL*FAVATVCGFLE
Trigger: TTCCAGAAAGCCGCAGACCGTGGCTACAGCAAAGCACAGTACAATGTGGGCTTGTGTCTCGAGCATGGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 72 bp CAAGGCCCTTCTCATAGCAAATTCCCAAGTGGAATCTaGTCTGAGAATCCCCATTGCTGGCCGCCAGCCAGA +
Preference number: 6 (lower is better)
Translates to: QGPSHSKFPSGI*SENPHCWPPAR
Trigger: TCTGGCTGGCGGCCAGCAATGGGGATTCTCAGAGCAGATTCCACTTGGGAATTTGCTATGAGAAGGGCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 72 bp GAGCAAGGATGGGTCCCTGACCCCACTGAACCACCATaGCACATCTGGTCTACCTACCCAAGAGAAGAGAAA +
Preference number: 6 (lower is better)
Translates to: EQGWVPDPTEPP*HIWSTYPREEK
Trigger: TTTCTCTTCTCTTGGGTAGGTAGACCAGATGTGGCATGGTGGTTCAGTGGGGTCAGGGACCCATCCTTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS CCA 72 bp TGTGGTTCCTTAGTAAAGAGCACCCCAAGGAAAGCTTaGGCCTCTGTCAAGCCAGAGTCTGCAGCCTGCTTC +
Preference number: 6 (lower is better)
Translates to: CGSLVKSTPRKA*ASVKPESAACF
Trigger: GAAGCAGGCTGCAGACTCTGGCTTGACAGAGGCCCAAGCTTTCCTTGGGGTGCTCTTTACTAAGGAACCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS CAA 72 bp GTGTGGTTCCTTAGTAAAGAGCACCCCAAGGAAAGCTaGGGCCTCTGTCAAGCCAGAGTCTGCAGCCTGCTT +
Preference number: 6 (lower is better)
Translates to: VWFLSKEHPKES*GLCQARVCSLL
Trigger: AAGCAGGCTGCAGACTCTGGCTTGACAGAGGCCCAAGCTTTCCTTGGGGTGCTCTTTACTAAGGAACCACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS CCA 72 bp TGGGTCCCTGACCCCACTGAACCACCATGCCACATCTaGTCTACCTACCCAAGAGAAGAGAAATCTCTCGTT +
Preference number: 6 (lower is better)
Translates to: WVPDPTEPPCHI*STYPREEKSLV
Trigger: AACGAGAGATTTCTCTTCTCTTGGGTAGGTAGACCAGATGTGGCATGGTGGTTCAGTGGGGTCAGGGACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS CAA 72 bp ACATCCAGTGAAAGGCATCTTTCCATCCACAGCACTTaGGGTCCCTGCTCCTCTTTGAACCGTGGGAACCTG +
Preference number: 6 (lower is better)
Translates to: TSSERHLSIHST*GPCSSLNRGNL
Trigger: CAGGTTCCCACGGTTCAAAGAGGAGCAGGGACCCAAAGTGCTGTGGATGGAAAGATGCCTTTCACTGGATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS CAA 90 bp TGTCCCCAGGAAGTTGAAAGTGATGGCTACACTGAGCTGAAAGAGTaGCTGAATGGAAGTCACAGCCTCCTCCAGAGGAAGAGCCTTGGC +
Preference number: 6 (lower is better)
Translates to: CPQEVESDGYTELKE*LNGSHSLLQRKSLG
Trigger: GCCAAGGCTCTTCCTCTGGAGGAGGCTGTGACTTCCATTCAGCAACTCTTTCAGCTCAGTGTAGCCATCACTTTCAACTTCCTGGGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS CAA 90 bp GGTACCCAGGAAGTTGAAAGTGATGGCTACACTGAGCTGAAAGAGTaGCTGAATGGAAGTCACAGCCTCCTCCAGAGGAAGAGCCTTGGC +
Preference number: 6 (lower is better)
Translates to: GTQEVESDGYTELKE*LNGSHSLLQRKSLG
Trigger: GCCAAGGCTCTTCCTCTGGAGGAGGCTGTGACTTCCATTCAGCAACTCTTTCAGCTCAGTGTAGCCATCACTTTCAACTTCCTGGGTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236078.2
CDS GCA 72 bp GAAAGGCATCTTTCCATCCACAGCACTTTGGGTCCCTaGTCCTCTTTGAACCGTGGGAACCTGATCTGTCAA +
Preference number: 6 (lower is better)
Translates to: ERHLSIHSTLGP*SSLNRGNLICQ
Trigger: TTGACAGATCAGGTTCCCACGGTTCAAAGAGGAGCAGGGACCCAAAGTGCTGTGGATGGAAAGATGCCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS CCA 72 bp TTCCCAAGTGGAATCTGCTCTGAGAATCCCCATTGCTaGCCGCCAGCCAGAGGTATTTTACTGCTCTCTGTT +
Preference number: 6 (lower is better)
Translates to: FPSGICSENPHC*PPARGILLLSV
Trigger: AACAGAGAGCAGTAAAATACCTCTGGCTGGCGGCCAGCAATGGGGATTCTCAGAGCAGATTCCACTTGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 72 bp ATCCCCATTGCTGGCCGCCAGCCAGAGGTATTTTACTaGTCTCTGTTCATCCAGGTGTGGTTCCTTAGTAAA +
Preference number: 6 (lower is better)
Translates to: IPIAGRQPEVFY*SLFIQVWFLSK
Trigger: TTTACTAAGGAACCACACCTGGATGAACAGAGAGCAGTAAAATACCTCTGGCTGGCGGCCAGCAATGGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS GCA 72 bp AAATTCCCAAGTGGAATCTGCTCTGAGAATCCCCATTaGTGGCCGCCAGCCAGAGGTATTTTACTGCTCTCT +
Preference number: 6 (lower is better)
Translates to: KFPSGICSENPH*WPPARGILLLS
Trigger: AGAGAGCAGTAAAATACCTCTGGCTGGCGGCCAGCAATGGGGATTCTCAGAGCAGATTCCACTTGGGAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
CDS CAA 72 bp GAAGTTGAAAGTGATGGCTACACTGAGCTGAAAGAGTaGCTGAATGGAAGTCACAGCCTCCTCCAGAGGAAG +
Preference number: 6 (lower is better)
Translates to: EVESDGYTELKE*LNGSHSLLQRK
Trigger: CTTCCTCTGGAGGAGGCTGTGACTTCCATTCAGCAACTCTTTCAGCTCAGTGTAGCCATCACTTTCAACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2
ENSMUST00000236078.2
CDS CCA 72 bp CCAGAGGTATTTTACTGCTCTCTGTTCATCCAGGTGTaGTTCCTTAGTAAAGAGCACCCCAAGGAAAGCTTG +
Preference number: 6 (lower is better)
Translates to: PEVFYCSLFIQV*FLSKEHPKESL
Trigger: CAAGCTTTCCTTGGGGTGCTCTTTACTAAGGAACCACACCTGGATGAACAGAGAGCAGTAAAATACCTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025314.7
ENSMUST00000235904.2