Pregenerated sensors for DEK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021377Ensembl transcript IDs: ENSMUST00000021807.13, ENSMUST00000129352.3, ENSMUST00000135278.8, ENSMUST00000224150.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTTCTATGACACTTAGAGTTAACACAACCACATTGATGACACTTTaGGGGCAAAGCAGAACTGGACAGTCCTCAGTGCCATCACCACTG | + |
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Preference number: 1 (lower is better) Translates to: ISMTLRVNTTTLMTL*GQSRTGQSSVPSPL Trigger: CAGTGGTGATGGCACTGAGGACTGTCCAGTTCTGCTTTGCCCTCAAAGTGTCATCAATGTGGTTGTGTTAACTCTAAGTGTCATAGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR TCA 90 bp | CATATTGAAGTCAAGTATGTGAAAATACCTGTTAATGCTCAAATCTaGTCTGTGATGGGAAGATTAAACACTCAGCTGGTACATCTAGTG | + |
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Preference number: 1 (lower is better) Translates to: HIEVKYVKIPVNAQI*SVMGRLNTQLVHLV Trigger: CACTAGATGTACCAGCTGAGTGTTTAATCTTCCCATCACAGATCAGATTTGAGCATTAACAGGTATTTTCACATACTTGACTTCAATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR-3UTR TCA 90 bp | TGCCCTATGATGAACAGACTGCCGCTATGTTTTCACACTGACAGAAGGCGTATTTCAGATCTTCAAATCTaGGAACAAGCCATCTGTCCG | + |
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Preference number: 2 (lower is better) Translates to: CPMMNRLPLCFHTDRRRISDLQI*EQAICP Trigger: CGGACAGATGGCTTGTTCTCAGATTTGAAGATCTGA...AATACGCCTTCTGTCAGTGTGAAAACATAGCGGCAGTCTGTTCATCATAGGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR-3UTR TCA 90 bp | CTGTCAGTTCACTTATATATAAATCCATGTGTGCTCACGCCTTCCCAGTTTTTGTCCGACTCGGTCATCTaGACAGCTGTGCCCTATGAT | + |
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Preference number: 2 (lower is better) Translates to: LSVHLYINPCVLTPSQFLSDSVI*TAVPYD Trigger: ATCATAGGGCACAGCTGTTCAGATGACCGAGTCGGA...CAAAAACTGGGAAGGCGTGAGCACACATGGATTTATATATAAGTGAACTGACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR-3UTR GCA 90 bp | TCAAATCTGATCTGTGATGGGAAGATTAAACACTCAGCTGGTACATCTAGTGTCTCATCTGAACAGCTGTaGCCTATGATGAACAGACTG | + |
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Preference number: 2 (lower is better) Translates to: SNLICDGKIKHSAGTSSVSSEQL*PMMNRL Trigger: CAGTCTGTTCATCATAGGGCACAGCTGTTCAGATGA...GACACTAGATGTACCAGCTGAGTGTTTAATCTTCCCATCACAGATCAGATTTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR-3UTR TCA 90 bp | TATGTTAACACGCAAAAGAGTCAGCAGCAAGTTCTACCAACAATAGCCTTAAAATCAGATCTTCAAATCTaGGAACAAGCCATCTGTCCG | + |
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Preference number: 2 (lower is better) Translates to: YVNTQKSQQQVLPTIALKSDLQI*EQAICP Trigger: CGGACAGATGGCTTGTTCTCAGATTTGAAGATCTGA...TTTTAAGGCTATTGTTGGTAGAACTTGCTGCTGACTCTTTTGCGTGTTAACATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021807.13 ENSMUST00000224150.2 |
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| 3UTR-3UTR TCA 90 bp | CACCAACTCTGGTTACACTTGATGCTTTTAATCATAATTATGAAGGTAACCAGGCGCCTTCCCAGTTTTTaGAGCTGTGATGTGTTTATC | + |
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Preference number: 2 (lower is better) Translates to: HQLWLHLMLLIIIMKVTRRLPSF*SCDVFI Trigger: GATAAACACATCACAGCTTCAAAAACTGGGAAGGCG...CCTGGTTACCTTCATAATTATGATTAAAAGCATCAAGTGTAACCAGAGTTGGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR-3UTR TCA 90 bp | CACCAACTCTGGTTACACTTGATGCTTTTAATCATAATTATGAAGGTAACCAGGGTCATGCCAACAACTTaGCGTATATACACATGCAGA | + |
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Preference number: 2 (lower is better) Translates to: HQLWLHLMLLIIIMKVTRVMPTT*RIYTCR Trigger: TCTGCATGTGTATATACGTCAAGTTGTTGGCATGAC...CCTGGTTACCTTCATAATTATGATTAAAAGCATCAAGTGTAACCAGAGTTGGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR-3UTR TCA 90 bp | TTGTCCACACCAACTCTGGTTACACTTGATGCTTTTAATCATAATTATGAAGGTTCACTGCTGCCTGGATaGACACTGACATTTAGTTAC | + |
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Preference number: 2 (lower is better) Translates to: LSTPTLVTLDAFNHNYEGSLLPG*TLTFSY Trigger: GTAACTAAATGTCAGTGTTCATCCAGGCAGCAGTGA...ACCTTCATAATTATGATTAAAAGCATCAAGTGTAACCAGAGTTGGTGTGGACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR TCA 72 bp | AAAGCAGAACTGGACAGTCCTCAGTGCCATCACCACTaGACTCTGCGCTGTCACTGCTGCCTGGATGAACAC | + |
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Preference number: 3 (lower is better) Translates to: KAELDSPQCHHH*TLRCHCCLDEH Trigger: GTGTTCATCCAGGCAGCAGTGACAGCGCAGAGTTCAGTGGTGATGGCACTGAGGACTGTCCAGTTCTGCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR GCA 72 bp | AACTGGACAGTCCTCAGTGCCATCACCACTGAACTCTaGGCTGTCACTGCTGCCTGGATGAACACTGACATT | + |
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Preference number: 3 (lower is better) Translates to: NWTVLSAITTEL*AVTAAWMNTDI Trigger: AATGTCAGTGTTCATCCAGGCAGCAGTGACAGCGCAGAGTTCAGTGGTGATGGCACTGAGGACTGTCCAGTT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR GCA 72 bp | GCAGAAAAGGTTCCGACTCGGTCATCTGAACAGCTGTaGCCTATGATGAACAGACTGCCGCTATGTTTTCAC | + |
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Preference number: 3 (lower is better) Translates to: AEKVPTRSSEQL*PMMNRLPLCFH Trigger: GTGAAAACATAGCGGCAGTCTGTTCATCATAGGGCACAGCTGTTCAGATGACCGAGTCGGAACCTTTTCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR CCA 72 bp | AACCACATTGATGACACTTTGAGGGCAAAGCAGAACTaGACAGTCCTCAGTGCCATCACCACTGAACTCTGC | + |
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Preference number: 3 (lower is better) Translates to: NHIDDTLRAKQN*TVLSAITTELC Trigger: GCAGAGTTCAGTGGTGATGGCACTGAGGACTGTCCAGTTCTGCTTTGCCCTCAAAGTGTCATCAATGTGGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR TCA 72 bp | ATATACACATGCAGAAAAGGTTCCGACTCGGTCATCTaGACAGCTGTGCCCTATGATGAACAGACTGCCGCT | + |
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Preference number: 3 (lower is better) Translates to: IYTCRKGSDSVI*TAVPYDEQTAA Trigger: AGCGGCAGTCTGTTCATCATAGGGCACAGCTGTTCAGATGACCGAGTCGGAACCTTTTCTGCATGTGTATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR TCA 72 bp | ACACTTAGAGTTAACACAACCACATTGATGACACTTTaGGGGCAAAGCAGAACTGGACAGTCCTCAGTGCCA | + |
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Preference number: 3 (lower is better) Translates to: TLRVNTTTLMTL*GQSRTGQSSVP Trigger: TGGCACTGAGGACTGTCCAGTTCTGCTTTGCCCTCAAAGTGTCATCAATGTGGTTGTGTTAACTCTAAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR TCA 72 bp | TCACCACTGAACTCTGCGCTGTCACTGCTGCCTGGATaGACACTGACATTTAGTTACAAGTTTAAAGACACA | + |
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Preference number: 3 (lower is better) Translates to: SPLNSALSLLPG*TLTFSYKFKDT Trigger: TGTGTCTTTAAACTTGTAACTAAATGTCAGTGTTCATCCAGGCAGCAGTGACAGCGCAGAGTTCAGTGGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR TCA 72 bp | AAAATAACATCTGTCACTTCTGTCATGCCAACAACTTaGCGTATATACACATGCAGAAAAGGTTCCGACTCG | + |
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Preference number: 3 (lower is better) Translates to: KITSVTSVMPTT*RIYTCRKGSDS Trigger: CGAGTCGGAACCTTTTCTGCATGTGTATATACGTCAAGTTGTTGGCATGACAGAAGTGACAGATGTTATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR TCA 72 bp | CCATGTGTGCTCACGCCTTCCCAGTTTTTGAAGCTGTaGTGTGTTTATCCTCATTATAAAATTTCTATGACA | + |
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Preference number: 3 (lower is better) Translates to: PCVLTPSQFLKL*CVYPHYKISMT Trigger: TGTCATAGAAATTTTATAATGAGGATAAACACATCACAGCTTCAAAAACTGGGAAGGCGTGAGCACACATGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR CCA 72 bp | TACTTTCAGAGATACCTATGTTGTCCACACCAACTCTaGTTACACTTGATGCTTTTAATCATAATTATGAAG | + |
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Preference number: 3 (lower is better) Translates to: YFQRYLCCPHQL*LHLMLLIIIMK Trigger: CTTCATAATTATGATTAAAAGCATCAAGTGTAACCAGAGTTGGTGTGGACAACATAGGTATCTCTGAAAGTA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS-3UTR TCA 90 bp | TCTGAACAGCTGTGCCCTATGATGAACAGACTGCCGCTATGTTTTCACACTGACATTTCACAAAGTTTCTaGCCCTTCCCTTGTGTCACT | + |
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Preference number: 4 (lower is better) Translates to: SEQLCPMMNRLPLCFHTDISQSF*PFPCVT Trigger: AGTGACACAAGGGAAGGGTCAGAAACTTTGTGAAAT...GTCAGTGTGAAAACATAGCGGCAGTCTGTTCATCATAGGGCACAGCTGTTCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS-3UTR GCA 90 bp | TGCCCTATGATGAACAGACTGCCGCTATGTTTTCACACTGACAGAAGGCGTATTTGTAAGGAAGACACTTaGATCGTCAGTCTCTCTACT | + |
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Preference number: 4 (lower is better) Translates to: CPMMNRLPLCFHTDRRRICKEDT*IVSLST Trigger: AGTAGAGAGACTGACGATGCAAGTGTCTTCCTTACA...AATACGCCTTCTGTCAGTGTGAAAACATAGCGGCAGTCTGTTCATCATAGGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS-3UTR TCA 90 bp | TTGTCCACACCAACTCTGGTTACACTTGATGCTTTTAATCATAATTATGAAGGTCGAATGGAAAGCCACTaGACTGACCCACGTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LSTPTLVTLDAFNHNYEGRMESH*TDPRSS Trigger: AGAAGAACGTGGGTCAGTTCAGTGGCTTTCCATTCG...ACCTTCATAATTATGATTAAAAGCATCAAGTGTAACCAGAGTTGGTGTGGACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS-3UTR TCA 90 bp | CTGTCAGTTCACTTATATATAAATCCATGTGTGCTCACGCCTTCCCAGTTTTTGACTACTAGACTCATCTaGCAGAATTTCAGGGCATTT | + |
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Preference number: 4 (lower is better) Translates to: LSVHLYINPCVLTPSQFLTTRLI*QNFRAF Trigger: AAATGCCCTGAAATTCTGTCAGATGAGTCTAGTAGT...CAAAAACTGGGAAGGCGTGAGCACACATGGATTTATATATAAGTGAACTGACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS-3UTR GCA 90 bp | CTTCTTGGTGGTACTGCTGTCTGCCTTCTTAACATTAGCACTCTTCACAGATTTTCAGGGCATTTAGTTTaGTTTGACTTCCTTGTTGTT | + |
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Preference number: 4 (lower is better) Translates to: LLGGTAVCLLNISTLHRFSGHLV*FDFLVV Trigger: AACAACAAGGAAGTCAAAGCAAACTAAATGCCCTGA...AAATCTGTGAAGAGTGCTAATGTTAAGAAGGCAGACAGCAGTACCACCAAGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224150.2 |
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| CDS-3UTR GCA 90 bp | CTGTCAGTTCACTTATATATAAATCCATGTGTGCTCACGCCTTCCCAGTTTTTGACCTCTTTGCAAATCTaGTTCATTGTGACTTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: LSVHLYINPCVLTPSQFLTSLQI*FIVTSS Trigger: GGAAGAAGTCACAATGAAGCAGATTTGCAAAGAGGT...CAAAAACTGGGAAGGCGTGAGCACACATGGATTTATATATAAGTGAACTGACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS-3UTR TCA 90 bp | TCTTTGCAAATCTGCTTCATTGTGACTTCTTCCAAGTTAGCATCAGCCAGTAATGCATTTAGTTTGCTTTaGCTTCCTTGTTGTTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: SLQICFIVTSSKLASASNAFSLL*LPCCSR Trigger: TCTGGAACAACAAGGAAGTCAAAGCAAACTAAATGC...ATTACTGGCTGATGCTAACTTGGAAGAAGTCACAATGAAGCAGATTTGCAAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224150.2 |
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| CDS-3UTR GCA 90 bp | ATCTGTCACTTCTGTCATGCCAACAACTTGACGTATATACACATGCAGAAAAGGTCAGGGCATTTAGTTTaGTTTGACTTCCTTGTTGTT | + |
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Preference number: 4 (lower is better) Translates to: ICHFCHANNLTYIHMQKRSGHLV*FDFLVV Trigger: AACAACAAGGAAGTCAAAGCAAACTAAATGCCCTGA...CCTTTTCTGCATGTGTATATACGTCAAGTTGTTGGCATGACAGAAGTGACAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| 3UTR CAA 72 bp | AAAAATAACATCTGTCACTTCTGTCATGCCAACAACTaGACGTATATACACATGCAGAAAAGGTTCCGACTC | + |
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Preference number: 4 (lower is better) Translates to: KNNICHFCHANN*TYIHMQKRFRL Trigger: GAGTCGGAACCTTTTCTGCATGTGTATATACGTCAAGTTGTTGGCATGACAGAAGTGACAGATGTTATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS-3UTR TCA 90 bp | TTGTCCACACCAACTCTGGTTACACTTGATGCTTTTAATCATAATTATGAAGGTGCATTTAGTTTGCTTTaGCTTCCTTGTTGTTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: LSTPTLVTLDAFNHNYEGAFSLL*LPCCSR Trigger: TCTGGAACAACAAGGAAGTCAAAGCAAACTAAATGC...ACCTTCATAATTATGATTAAAAGCATCAAGTGTAACCAGAGTTGGTGTGGACAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS-3UTR GCA 90 bp | TTGTCCACACCAACTCTGGTTACACTTGATGCTTTTAATCATAATTATGAAGGTATTTTGGTAATGGTTTaGCAGAAGGCTTTGGATGCA | + |
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Preference number: 4 (lower is better) Translates to: LSTPTLVTLDAFNHNYEGILVMV*QKALDA Trigger: TGCATCCAAAGCCTTCTGGCAAACCATTACCAAAAT...ACCTTCATAATTATGATTAAAAGCATCAAGTGTAACCAGAGTTGGTGTGGACAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS-3UTR CCA 90 bp | CACCAACTCTGGTTACACTTGATGCTTTTAATCATAATTATGAAGGTAACCAGGTCCTTCTTTTTATACTaGGTACTGCCTTTTTCGAAT | + |
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Preference number: 4 (lower is better) Translates to: HQLWLHLMLLIIIMKVTRSFFLY*VLPFSN Trigger: ATTCGAAAAAGGCAGTACCCAGTATAAAAAGAAGGA...CCTGGTTACCTTCATAATTATGATTAAAAGCATCAAGTGTAACCAGAGTTGGTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS CCA 90 bp | CATCATCGTCTTCGTCATCCTCCTCCTCCTCCTCACTCTCTTCCCTaGGACCCGGCATCTCGGGTTCCTTCTCGGATGAGGGCGGCACGG | + |
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Preference number: 5 (lower is better) Translates to: HHRLRHPPPPPHSLP*DPASRVPSRMRAAR Trigger: CCGTGCCGCCCTCATCCGAGAAGGAACCCGAGATGCCGGGTCCCAGGGAAGAGAGTGAGGAGGAGGAGGAGGATGACGAAGACGATGATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS TCA 90 bp | CCTTCTTTTTATACTGGGTACTGCCTTTTTCGAATGGAAAGCCACTaGACTGACCCACGTTCTTCTTCAACGAGGACACTGTGCCCGGCC | + |
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Preference number: 5 (lower is better) Translates to: PSFYTGYCLFRMESH*TDPRSSSTRTLCPA Trigger: GGCCGGGCACAGTGTCCTCGTTGAAGAAGAACGTGGGTCAGTTCAGTGGCTTTCCATTCGAAAAAGGCAGTACCCAGTATAAAAAGAAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS TCA 90 bp | TTTTTATACTGGGTACTGCCTTTTTCGAATGGAAAGCCACTGAACTaGCCCACGTTCTTCTTCAACGAGGACACTGTGCCCGGCCTGTTG | + |
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Preference number: 5 (lower is better) Translates to: FLYWVLPFSNGKPLN*PTFFFNEDTVPGLL Trigger: CAACAGGCCGGGCACAGTGTCCTCGTTGAAGAAGAACGTGGGTCAGTTCAGTGGCTTTCCATTCGAAAAAGGCAGTACCCAGTATAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS-3UTR CAA 90 bp | CAGCTGTGCCCTATGATGAACAGACTGCCGCTATGTTTTCACACTGACAGAAGGGCTTTGACTTCCTTGTaGTTCCAGAACTGTTCCGTT | + |
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Preference number: 5 (lower is better) Translates to: QLCPMMNRLPLCFHTDRRALTSL*FQNCSV Trigger: AACGGAACAGTTCTGGAACAACAAGGAAGTCAAAGC...CCTTCTGTCAGTGTGAAAACATAGCGGCAGTCTGTTCATCATAGGGCACAGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS GCA 90 bp | TTCCCTTGTGTCACTGTAAATGGCTCTCTCTGTAAGGAAGACACTTaGATCGTCAGTCTCTCTACTTTCTTCTTCTCTCTCTTGCCTTCC | + |
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Preference number: 5 (lower is better) Translates to: FPCVTVNGSLCKEDT*IVSLSTFFFSLLPS Trigger: GGAAGGCAAGAGAGAGAAGAAGAAAGTAGAGAGACTGACGATGCAAGTGTCTTCCTTACAGAGAGAGCCATTTACAGTGACACAAGGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS CCA 90 bp | CAACATTTCTTCCTTCTTTTTATACTGGGTACTGCCTTTTTCGAATaGAAAGCCACTGAACTGACCCACGTTCTTCTTCAACGAGGACAC | + |
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Preference number: 5 (lower is better) Translates to: QHFFLLFILGTAFFE*KATELTHVLLQRGH Trigger: GTGTCCTCGTTGAAGAAGAACGTGGGTCAGTTCAGTGGCTTTCCATTCGAAAAAGGCAGTACCCAGTATAAAAAGAAGGAAGAAATGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS-3UTR CAA 90 bp | TCAAATCTGATCTGTGATGGGAAGATTAAACACTCAGCTGGTACATCTAGTGTCTTCTTCTTCTCTCTCTaGCCTTCCACGATAAGACTC | + |
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Preference number: 5 (lower is better) Translates to: SNLICDGKIKHSAGTSSVFFFSL*PSTIRL Trigger: GAGTCTTATCGTGGAAGGCAAGAGAGAGAAGAAGAA...GACACTAGATGTACCAGCTGAGTGTTTAATCTTCCCATCACAGATCAGATTTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS GCA 90 bp | GTTCGCTGTTCACGCCTGACCTCTCTAAATCAAGAACCTCACAGATaGTCTTTAACATGGCATTTCGAAACTTTTTCAACATTTCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: VRCSRLTSLNQEPHR*SLTWHFETFSTFLP Trigger: AGGAAGAAATGTTGAAAAAGTTTCGAAATGCCATGTTAAAGAGCATCTGTGAGGTTCTTGATTTAGAGAGGTCAGGCGTGAACAGCGAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS-3UTR CAA 90 bp | TTCTTGGTGGTACTGCTGTCTGCCTTCTTAACATTAGCACTCTTCACAGATTTTTTTGCTTTGACTTCCTaGTTGTTCCAGAACTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: FLVVLLSAFLTLALFTDFFALTS*LFQNCS Trigger: GGAACAGTTCTGGAACAACAAGGAAGTCAAAGCAAA...AAAATCTGTGAAGAGTGCTAATGTTAAGAAGGCAGACAGCAGTACCACCAAGAA 41% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000224150.2 |
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| CDS-3UTR CAA 90 bp | TCTTTGCAAATCTGCTTCATTGTGACTTCTTCCAAGTTAGCATCAGCCAGTAATCTCACAGCAGAAAGGTaGTACTCCTCTTCACTTTCT | + |
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Preference number: 5 (lower is better) Translates to: SLQICFIVTSSKLASASNLTAER*YSSSLS Trigger: AGAAAGTGAAGAGGAGTACAACCTTTCTGCTGTGAG...ATTACTGGCTGATGCTAACTTGGAAGAAGTCACAATGAAGCAGATTTGCAAAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224150.2 |
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| CDS-3UTR CAA 90 bp | TTGTCCACACCAACTCTGGTTACACTTGATGCTTTTAATCATAATTATGAAGGTTTTCTGACCCTTCCCTaGTGTCACTGTAAATGGCTC | + |
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Preference number: 5 (lower is better) Translates to: LSTPTLVTLDAFNHNYEGFLTLP*CHCKWL Trigger: GAGCCATTTACAGTGACACAAGGGAAGGGTCAGAAA...ACCTTCATAATTATGATTAAAAGCATCAAGTGTAACCAGAGTTGGTGTGGACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS-3UTR CAA 90 bp | TATGTTAACACGCAAAAGAGTCAGCAGCAAGTTCTACCAACAATAGCCTTAAAAGATTTTGGTAATGGTTaGCCAGAAGGCTTTGGATGC | + |
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Preference number: 5 (lower is better) Translates to: YVNTQKSQQQVLPTIALKDFGNG*PEGFGC Trigger: GCATCCAAAGCCTTCTGGCAAACCATTACCAAAATC...TTTTAAGGCTATTGTTGGTAGAACTTGCTGCTGACTCTTTTGCGTGTTAACATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS GCA 90 bp | TCATCACTACTAGACTCATCTGACAGAATTTCAGGGCATTTAGTTTaGTTTGACTTCCTTGTTGTTCCAGAACTGTTCCGTTCCTTTTTA | + |
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Preference number: 5 (lower is better) Translates to: SSLLDSSDRISGHLV*FDFLVVPELFRSFL Trigger: TAAAAAGGAACGGAACAGTTCTGGAACAACAAGGAAGTCAAAGCAAACTAAATGCCCTGAAATTCTGTCAGATGAGTCTAGTAGTGATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000224150.2 |
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| CDS-3UTR CAA 90 bp | GTCAACAGTTTACTACTGTCAGTTCACTTATATATAAATCCATGTGTGCTCACGTTTGCTTTGACTTCCTaGTTGTTCCAGAACTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: VNSLLLSVHLYINPCVLTFALTS*LFQNCS Trigger: GGAACAGTTCTGGAACAACAAGGAAGTCAAAGCAAA...CGTGAGCACACATGGATTTATATATAAGTGAACTGACAGTAGTAAACTGTTGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS-3UTR CAA 90 bp | TTGTCCACACCAACTCTGGTTACACTTGATGCTTTTAATCATAATTATGAAGGTGTTTGCCAGAAGGCTTaGGATGCATTAAGAAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: LSTPTLVTLDAFNHNYEGVCQKA*DALRSS Trigger: TGAACTTCTTAATGCATCCAAAGCCTTCTGGCAAAC...ACCTTCATAATTATGATTAAAAGCATCAAGTGTAACCAGAGTTGGTGTGGACAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021807.13 |
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| CDS TCA 72 bp | TTCCCTGGGACCCGGCATCTCGGGTTCCTTCTCGGATaGGGGCGGCACGGGGGCGTCCTCTCCCTCCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: FPGTRHLGFLLG*GRHGGVLSLRS Trigger: GCTGCGGAGGGAGAGGACGCCCCCGTGCCGCCCTCATCCGAGAAGGAACCCGAGATGCCGGGTCCCAGGGAA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS CCA 72 bp | CTTCGTCATCCTCCTCCTCCTCCTCACTCTCTTCCCTaGGACCCGGCATCTCGGGTTCCTTCTCGGATGAGG | + |
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Preference number: 6 (lower is better) Translates to: LRHPPPPPHSLP*DPASRVPSRMR Trigger: CCTCATCCGAGAAGGAACCCGAGATGCCGGGTCCCAGGGAAGAGAGTGAGGAGGAGGAGGAGGATGACGAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS TCA 72 bp | TGGGTACTGCCTTTTTCGAATGGAAAGCCACTGAACTaGCCCACGTTCTTCTTCAACGAGGACACTGTGCCC | + |
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Preference number: 6 (lower is better) Translates to: WVLPFSNGKPLN*PTFFFNEDTVP Trigger: GGGCACAGTGTCCTCGTTGAAGAAGAACGTGGGTCAGTTCAGTGGCTTTCCATTCGAAAAAGGCAGTACCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS TCA 72 bp | TATACTGGGTACTGCCTTTTTCGAATGGAAAGCCACTaGACTGACCCACGTTCTTCTTCAACGAGGACACTG | + |
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Preference number: 6 (lower is better) Translates to: YTGYCLFRMESH*TDPRSSSTRTL Trigger: CAGTGTCCTCGTTGAAGAAGAACGTGGGTCAGTTCAGTGGCTTTCCATTCGAAAAAGGCAGTACCCAGTATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS CCA 72 bp | TTCCTTCTTTTTATACTGGGTACTGCCTTTTTCGAATaGAAAGCCACTGAACTGACCCACGTTCTTCTTCAA | + |
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Preference number: 6 (lower is better) Translates to: FLLFILGTAFFE*KATELTHVLLQ Trigger: TTGAAGAAGAACGTGGGTCAGTTCAGTGGCTTTCCATTCGAAAAAGGCAGTACCCAGTATAAAAAGAAGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS GCA 72 bp | TCACGCCTGACCTCTCTAAATCAAGAACCTCACAGATaGTCTTTAACATGGCATTTCGAAACTTTTTCAACA | + |
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Preference number: 6 (lower is better) Translates to: SRLTSLNQEPHR*SLTWHFETFST Trigger: TGTTGAAAAAGTTTCGAAATGCCATGTTAAAGAGCATCTGTGAGGTTCTTGATTTAGAGAGGTCAGGCGTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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| CDS CCA 72 bp | TCTCTAAATCAAGAACCTCACAGATGCTCTTTAACATaGCATTTCGAAACTTTTTCAACATTTCTTCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: SLNQEPHRCSLT*HFETFSTFLPS Trigger: AGAAGGAAGAAATGTTGAAAAAGTTTCGAAATGCCATGTTAAAGAGCATCTGTGAGGTTCTTGATTTAGAGA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021807.13 ENSMUST00000129352.3 ENSMUST00000135278.8 |
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