Pregenerated sensors for DEFB7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037790Ensembl transcript IDs: ENSMUST00000047851.4
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR GCA 90 bp | GGAACTTTAATTTGGTTTAAGTTTTGTCCATCTTCATGGAGGAACAAATTCTGGTATGAAAAAGGCCAATaGACCGTTGCAGGCATTCGC | + |
Preference number: 4 (lower is better) Translates to: GTLIWFKFCPSSWRNKFWYEKGQ*TVAGIR Trigger: GCGAATGCCTGCAACGGTGCATTGGCCTTTTTCATA...CCAGAATTTGTTCCTCCATGAAGATGGACAAAACTTAAACCAAATTAAAGTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS-3UTR CCA 90 bp | GGAACTTTAATTTGGTTTAAGTTTTGTCCATCTTCATGGAGGAACAAATTCTGGGCTAAAAGCTGCAAATaGAGACAGCAACACCAGGAG | + |
Preference number: 4 (lower is better) Translates to: GTLIWFKFCPSSWRNKFWAKSCK*RQQHQE Trigger: CTCCTGGTGTTGCTGTCTCCATTTGCAGCTTTTAGC...CCAGAATTTGTTCCTCCATGAAGATGGACAAAACTTAAACCAAATTAAAGTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS-3UTR GCA 90 bp | GGAACTTTAATTTGGTTTAAGTTTTGTCCATCTTCATGGAGGAACAAATTCTGGGTCTTGGCTAAAAGCTaGAAATGGAGACAGCAACAC | + |
Preference number: 4 (lower is better) Translates to: GTLIWFKFCPSSWRNKFWVLAKS*KWRQQH Trigger: GTGTTGCTGTCTCCATTTGCAGCTTTTAGCCAAGAC...CCAGAATTTGTTCCTCCATGAAGATGGACAAAACTTAAACCAAATTAAAGTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS-3UTR TCA 90 bp | GGAACTTTAATTTGGTTTAAGTTTTGTCCATCTTCATGGAGGAACAAATTCTGGCAAGTTCCAATCTTATaGAAAAGGCCAATGCACCGT | + |
Preference number: 4 (lower is better) Translates to: GTLIWFKFCPSSWRNKFWQVPIL*KRPMHR Trigger: ACGGTGCATTGGCCTTTTTCATAAGATTGGAACTTG...CCAGAATTTGTTCCTCCATGAAGATGGACAAAACTTAAACCAAATTAAAGTTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS-3UTR GCA 90 bp | GGAACTTTAATTTGGTTTAAGTTTTGTCCATCTTCATGGAGGAACAAATTCTGGCAACACCAGGAGAAATaGGAACAGAACATAATGGAT | + |
Preference number: 4 (lower is better) Translates to: GTLIWFKFCPSSWRNKFWQHQEK*EQNIMD Trigger: ATCCATTATGTTCTGTTCGCATTTCTCCTGGTGTTG...CCAGAATTTGTTCCTCCATGAAGATGGACAAAACTTAAACCAAATTAAAGTTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS-3UTR CCA 90 bp | GGAACTTTAATTTGGTTTAAGTTTTGTCCATCTTCATGGAGGAACAAATTCTGGCTTTGTCTTCTTCTCTaGGATTTGAAACTTGCAGCA | + |
Preference number: 4 (lower is better) Translates to: GTLIWFKFCPSSWRNKFWLCLLL*DLKLAA Trigger: TGCTGCAAGTTTCAAATCCCAGAGAAGAAGACAAAG...CCAGAATTTGTTCCTCCATGAAGATGGACAAAACTTAAACCAAATTAAAGTTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS-3UTR TCA 90 bp | GGAACTTTAATTTGGTTTAAGTTTTGTCCATCTTCATGGAGGAACAAATTCTGGTTCTTCTCTGGGATTTaGAACTTGCAGCATTTGAAA | + |
Preference number: 4 (lower is better) Translates to: GTLIWFKFCPSSWRNKFWFFSGI*NLQHLK Trigger: TTTCAAATGCTGCAAGTTTCAAATCCCAGAGAAGAA...CCAGAATTTGTTCCTCCATGAAGATGGACAAAACTTAAACCAAATTAAAGTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS GCA 90 bp | TTCCCGATAGCAAGCTCGTTTACTGTTGATGTCTTGGCTAAAAGCTaGAAATGGAGACAGCAACACCAGGAGAAATGCGAACAGAACATA | + |
Preference number: 5 (lower is better) Translates to: FPIASSFTVDVLAKS*KWRQQHQEKCEQNI Trigger: TATGTTCTGTTCGCATTTCTCCTGGTGTTGCTGTCTCCATTTGCAGCTTTTAGCCAAGACATCAACAGTAAACGAGCTTGCTATCGGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS TCA 90 bp | ACAGGATCTTTGTCTTCTTCTCTGGGATTTGAAACTTGCAGCATTTaGAACGAAAATTACAAGTTCCAATCTTATGAAAAAGGCCAATGC | + |
Preference number: 5 (lower is better) Translates to: TGSLSSSLGFETCSI*NENYKFQSYEKGQC Trigger: GCATTGGCCTTTTTCATAAGATTGGAACTTGTAATTTTCGTTTCAAATGCTGCAAGTTTCAAATCCCAGAGAAGAAGACAAAGATCCTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS CAA 90 bp | GCATTCGCCTCCTTCCCGATAGCAAGCTCGTTTACTGTTGATGTCTaGGCTAAAAGCTGCAAATGGAGACAGCAACACCAGGAGAAATGC | + |
Preference number: 6 (lower is better) Translates to: AFASFPIASSFTVDV*AKSCKWRQQHQEKC Trigger: GCATTTCTCCTGGTGTTGCTGTCTCCATTTGCAGCTTTTAGCCAAGACATCAACAGTAAACGAGCTTGCTATCGGGAAGGAGGCGAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS CAA 72 bp | TCCTTCCCGATAGCAAGCTCGTTTACTGTTGATGTCTaGGCTAAAAGCTGCAAATGGAGACAGCAACACCAG | + |
Preference number: 6 (lower is better) Translates to: SFPIASSFTVDV*AKSCKWRQQHQ Trigger: CTGGTGTTGCTGTCTCCATTTGCAGCTTTTAGCCAAGACATCAACAGTAAACGAGCTTGCTATCGGGAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS GCA 72 bp | GCAAGCTCGTTTACTGTTGATGTCTTGGCTAAAAGCTaGAAATGGAGACAGCAACACCAGGAGAAATGCGAA | + |
Preference number: 6 (lower is better) Translates to: ASSFTVDVLAKS*KWRQQHQEKCE Trigger: TTCGCATTTCTCCTGGTGTTGCTGTCTCCATTTGCAGCTTTTAGCCAAGACATCAACAGTAAACGAGCTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS CCA 72 bp | TCGTTTACTGTTGATGTCTTGGCTAAAAGCTGCAAATaGAGACAGCAACACCAGGAGAAATGCGAACAGAAC | + |
Preference number: 6 (lower is better) Translates to: SFTVDVLAKSCK*RQQHQEKCEQN Trigger: GTTCTGTTCGCATTTCTCCTGGTGTTGCTGTCTCCATTTGCAGCTTTTAGCCAAGACATCAACAGTAAACGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |
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CDS TCA 72 bp | CAGCATTTGAAACGAAAATTACAAGTTCCAATCTTATaGAAAAGGCCAATGCACCGTTGCAGGCATTCGCCT | + |
Preference number: 6 (lower is better) Translates to: QHLKRKLQVPIL*KRPMHRCRHSP Trigger: AGGCGAATGCCTGCAACGGTGCATTGGCCTTTTTCATAAGATTGGAACTTGTAATTTTCGTTTCAAATGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047851.4 |