Pregenerated sensors for DEFB6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050756

Ensembl transcript IDs: ENSMUST00000063112.4

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	CATATTCACGAAGAAGCAAATTCTGGCACTTATTCACATTGCTGGTTCTTGGTCCATCTGATTTTAGGATaGCCACAATGGCCACCCAGT	+
Preference number: 4 (lower is better) Translates to: HIHEEANSGTYSHCWFLVHLILG*PQWPPS Trigger: ACTGGGTGGCCATTGTGGCCATCCTAAAATCAGATG...GACCAAGAACCAGCAATGTGAATAAGTGCCAGAATTTGCTTCTTCGTGAATATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063112.4
CDS-3UTR CCA 90 bp	TTGTTTTGTGCATATTCACGAAGAAGCAAATTCTGGCACTTATTCACATTGCTGGGACTGTTGATTAATTaGGAAAAGGCTGCAAGTGGA	+
Preference number: 4 (lower is better) Translates to: LFCAYSRRSKFWHLFTLLGLLIN*EKAASG Trigger: TCCACTTGCAGCCTTTTCCCAATTAATCAACAGTCC...CAGCAATGTGAATAAGTGCCAGAATTTGCTTCTTCGTGAATATGCACAAAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063112.4
CDS-3UTR TCA 90 bp	GGGTTTGTTTTGTGCATATTCACGAAGAAGCAAATTCTGGCACTTATTCACATTATGTTACTGGACTGTTaGTTAATTGGGAAAAGGCTG	+
Preference number: 4 (lower is better) Translates to: GFVLCIFTKKQILALIHIMLLDC*LIGKRL Trigger: CAGCCTTTTCCCAATTAATCAACAGTCCAGTAACAT...AATGTGAATAAGTGCCAGAATTTGCTTCTTCGTGAATATGCACAAAACAAACCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063112.4
CDS GCA 72 bp	GATGGCCACAATGGCCACCCAGTCGAAAACCTCCATTaGATGAACGCTGGCATGAGCCTCCATAGCTCATGC	+
Preference number: 6 (lower is better) Translates to: DGHNGHPVENLH*MNAGMSLHSSC Trigger: GCATGAGCTATGGAGGCTCATGCCAGCGTTCATGCAATGGAGGTTTTCGACTGGGTGGCCATTGTGGCCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063112.4
CDS CCA 72 bp	TTTCTGCGGCAGCATCTGATTTTAGGATGGCCACAATaGCCACCCAGTCGAAAACCTCCATTGCATGAACGC	+
Preference number: 6 (lower is better) Translates to: FLRQHLILGWPQ*PPSRKPPLHER Trigger: GCGTTCATGCAATGGAGGTTTTCGACTGGGTGGCCATTGTGGCCATCCTAAAATCAGATGCTGCCGCAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063112.4
CDS TCA 72 bp	ATGAGCCTCCATAGCTCATGCATGTTACTGGACTGTTaGTTAATTGGGAAAAGGCTGCAAGTGGAGACAGCA	+
Preference number: 6 (lower is better) Translates to: MSLHSSCMLLDC*LIGKRLQVETA Trigger: TGCTGTCTCCACTTGCAGCCTTTTCCCAATTAATCAACAGTCCAGTAACATGCATGAGCTATGGAGGCTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063112.4