Pregenerated sensors for DEFB5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039785Ensembl transcript IDs: ENSMUST00000110763.2
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCAACTTACTGGATTGTTGATTGTTTTGCTAAAGACACCTGCAAGTaGAGACAGCAGCACCAGGAGAAATGCAAAGAGAAGGTAATGGAT | + |
|
Preference number: 5 (lower is better) Translates to: ATYWIVDCFAKDTCK*RQQHQEKCKEKVMD Trigger: ATCCATTACCTTCTCTTTGCATTTCTCCTGGTGCTGCTGTCTCCACTTGCAGGTGTCTTTAGCAAAACAATCAACAATCCAGTAAGTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110763.2 |
||
| CDS CCA 90 bp | CTTGCACAGATACCTGCATATGCCTCCAATCATACAGCAACTTACTaGATTGTTGATTGTTTTGCTAAAGACACCTGCAAGTGGAGACAG | + |
|
Preference number: 5 (lower is better) Translates to: LAQIPAYASNHTATY*IVDCFAKDTCKWRQ Trigger: CTGTCTCCACTTGCAGGTGTCTTTAGCAAAACAATCAACAATCCAGTAAGTTGCTGTATGATTGGAGGCATATGCAGGTATCTGTGCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110763.2 |
||
| CDS CAA 90 bp | CACAGATACCTGCATATGCCTCCAATCATACAGCAACTTACTGGATaGTTGATTGTTTTGCTAAAGACACCTGCAAGTGGAGACAGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: HRYLHMPPIIQQLTG*LIVLLKTPASGDSS Trigger: GCTGCTGTCTCCACTTGCAGGTGTCTTTAGCAAAACAATCAACAATCCAGTAAGTTGCTGTATGATTGGAGGCATATGCAGGTATCTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110763.2 |
||
| CDS CAA 72 bp | CTGCATATGCCTCCAATCATACAGCAACTTACTGGATaGTTGATTGTTTTGCTAAAGACACCTGCAAGTGGA | + |
|
Preference number: 6 (lower is better) Translates to: LHMPPIIQQLTG*LIVLLKTPASG Trigger: TCCACTTGCAGGTGTCTTTAGCAAAACAATCAACAATCCAGTAAGTTGCTGTATGATTGGAGGCATATGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110763.2 |
||