Pregenerated sensors for DEFB47 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075573Ensembl transcript IDs: ENSMUST00000100492.5
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GCAGGCAAGGGAGAAGGTGAGTGTAGTAAGCAGAACTCTGCAGAGCTCGTCCATGCACTGCTTTTCCCCTaGGACAAGGCCAGCCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: AGKGEGECSKQNSAELVHALLFP*DKASLS Trigger: GGAAAGGCTGGCCTTGTCCCAGGGGAAAAGCAGTGC...ATGGACGAGCTCTGCAGAGTTCTGCTTACTACACTCACCTTCTCCCTTGCCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100492.5 |
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| CDS-3UTR GCA 90 bp | CAGGCAAGGGAGAAGGTGAGTGTAGTAAGCAGAACTCTGCAGAGCTCGTCCATGTTCCTTTCAACGAAATaGACTGCTTTTCCCCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: QAREKVSVVSRTLQSSSMFLSTK*TAFPLG Trigger: TCCCAGGGGAAAAGCAGTGCATTTCGTTGAAAGGAA...CATGGACGAGCTCTGCAGAGTTCTGCTTACTACACTCACCTTCTCCCTTGCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100492.5 |
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| CDS-3UTR GCA 90 bp | TGCAGAGCTCGTCCATGTTTTCTGGAGTTTGAAGGGCTTATCATGTTCTTCCCTTGCACGCTAGGTCTTTaGATATTCCTTTCAACGAAA | + |
|
Preference number: 4 (lower is better) Translates to: CRARPCFLEFEGLIMFFPCTLGL*IFLSTK Trigger: TTTCGTTGAAAGGAATATGCAAAGACCTAGCGTGCA...AGGGAAGAACATGATAAGCCCTTCAAACTCCAGAAAACATGGACGAGCTCTGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100492.5 |
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| CDS GCA 90 bp | CTGAGGATGTGCACGCTAGGTCTTTGCATATTCCTTTCAACGAAATaGACTGCTTTTCCCCTGGGACAAGGCCAGCCTTTCCTCTCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: LRMCTLGLCIFLSTK*TAFPLGQGQPFLSA Trigger: TGCTGAGAGGAAAGGCTGGCCTTGTCCCAGGGGAAAAGCAGTGCATTTCGTTGAAAGGAATATGCAAAGACCTAGCGTGCACATCCTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100492.5 |
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| CDS CCA 72 bp | GCATATTCCTTTCAACGAAATGCACTGCTTTTCCCCTaGGACAAGGCCAGCCTTTCCTCTCAGCATCATCAT | + |
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Preference number: 6 (lower is better) Translates to: AYSFQRNALLFP*DKASLSSQHHH Trigger: ATGATGATGCTGAGAGGAAAGGCTGGCCTTGTCCCAGGGGAAAAGCAGTGCATTTCGTTGAAAGGAATATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100492.5 |
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