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Pregenerated sensors for DEFB43 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075572

Ensembl transcript IDs: ENSMUST00000100491.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GACGTGTATTTATGTGAACATGACCACCTAAGCATGAAATTGTCGTaGAGTTCCTGTTACTCATCATACCATTTATTCGTAAGTAGACAA +
Preference number: 1 (lower is better)
Translates to: DVYLCEHDHLSMKLS*SSCYSSYHLFVSRQ
Trigger: TTGTCTACTTACGAATAAATGGTATGATGAGTAACAGGAACTTCACGACAATTTCATGCTTAGGTGGTCATGTTCACATAAATACACGTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100491.2
3UTR-3UTR CCA 90 bp AGTTCCTGTTACTCATCATACCATTTATTCGTAAGTAGACAAGGAACTTGTATCTTCGGTGCCTTCTCCTaGAATCTAAGAAGACAGAGC +
Preference number: 2 (lower is better)
Translates to: SSCYSSYHLFVSRQGTCIFGAFS*NLRRQS
Trigger: GCTCTGTCTTCTTAGATTCCAGGAGAAGGCACCGAA...GATACAAGTTCCTTGTCTACTTACGAATAAATGGTATGATGAGTAACAGGAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100491.2
3UTR GCA 72 bp TTCGTAAGTAGACAAGGAACTTGTATCTGCTTTCGGTaGCTTCTCCTGGAATCTAAGAAGACAGAGCTCAAC +
Preference number: 3 (lower is better)
Translates to: FVSRQGTCICFR*LLLESKKTELN
Trigger: GTTGAGCTCTGTCTTCTTAGATTCCAGGAGAAGGCACCGAAAGCAGATACAAGTTCCTTGTCTACTTACGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100491.2
3UTR TCA 72 bp TTATGTGAACATGACCACCTAAGCATGAAATTGTCGTaGAGTTCCTGTTACTCATCATACCATTTATTCGTA +
Preference number: 3 (lower is better)
Translates to: LCEHDHLSMKLS*SSCYSSYHLFV
Trigger: TACGAATAAATGGTATGATGAGTAACAGGAACTTCACGACAATTTCATGCTTAGGTGGTCATGTTCACATAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100491.2
CDS-3UTR CCA 90 bp AAGGAACTTGTATCTGCTTTCGGTGCCTTCTCCTGGAATCTAAGAAGACAGAGCTCTCAAGGAAGCTCCTaGCCAGAGGAACTATGGATA +
Preference number: 4 (lower is better)
Translates to: KELVSAFGAFSWNLRRQSSQGSS*PEELWI
Trigger: TATCCATAGTTCCTCTGGCCAGGAGCTTCCTTGAGA...GCTCTGTCTTCTTAGATTCCAGGAGAAGGCACCGAAAGCAGATACAAGTTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100491.2
CDS-3UTR TCA 90 bp AGTTCCTGTTACTCATCATACCATTTATTCGTAAGTAGACAAGGAACTTGTATCCTATGGATAACAAGGTaGGGACCCCCAGGATGGAGA +
Preference number: 4 (lower is better)
Translates to: SSCYSSYHLFVSRQGTCILWITR*GPPGWR
Trigger: TCTCCATCCTGGGGGTCCTCACCTTGTTATCCATAG...GATACAAGTTCCTTGTCTACTTACGAATAAATGGTATGATGAGTAACAGGAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100491.2
CDS TCA 90 bp GGCGTATTCGTTAGCTTTGCACTTCATCCTGCAGTGGCGGTGCTTTaGACAGTCCTGATTCTCAAGGAAGCTCCTGGCCAGAGGAACTAT +
Preference number: 5 (lower is better)
Translates to: GVFVSFALHPAVAVL*TVLILKEAPGQRNY
Trigger: ATAGTTCCTCTGGCCAGGAGCTTCCTTGAGAATCAGGACTGTTCAAAGCACCGCCACTGCAGGATGAAGTGCAAAGCTAACGAATACGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100491.2
CDS-3UTR CAA 90 bp ACTTGTATCTGCTTTCGGTGCCTTCTCCTGGAATCTAAGAAGACAGAGCTCAACTGCAGTGGCGGTGCTTaGAACAGTCCTGATTCTCAA +
Preference number: 5 (lower is better)
Translates to: TCICFRCLLLESKKTELNCSGGA*NSPDSQ
Trigger: TTGAGAATCAGGACTGTTCAAAGCACCGCCACTGCA...GTTGAGCTCTGTCTTCTTAGATTCCAGGAGAAGGCACCGAAAGCAGATACAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100491.2
CDS-3UTR CAA 90 bp AGTTCCTGTTACTCATCATACCATTTATTCGTAAGTAGACAAGGAACTTGTATCCACATCTTCTTCTTCTaGGATTCCTTCTTCTTCACC +
Preference number: 5 (lower is better)
Translates to: SSCYSSYHLFVSRQGTCIHIFFF*DSFFFT
Trigger: GGTGAAGAAGAAGGAATCCAAGAAGAAGAAGATGTG...GATACAAGTTCCTTGTCTACTTACGAATAAATGGTATGATGAGTAACAGGAACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100491.2
CDS TCA 72 bp CACTTCATCCTGCAGTGGCGGTGCTTTGAACAGTCCTaGTTCTCAAGGAAGCTCCTGGCCAGAGGAACTATG +
Preference number: 6 (lower is better)
Translates to: HFILQWRCFEQS*FSRKLLARGTM
Trigger: CATAGTTCCTCTGGCCAGGAGCTTCCTTGAGAATCAGGACTGTTCAAAGCACCGCCACTGCAGGATGAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100491.2
CDS TCA 72 bp GTTAGCTTTGCACTTCATCCTGCAGTGGCGGTGCTTTaGACAGTCCTGATTCTCAAGGAAGCTCCTGGCCAG +
Preference number: 6 (lower is better)
Translates to: VSFALHPAVAVL*TVLILKEAPGQ
Trigger: CTGGCCAGGAGCTTCCTTGAGAATCAGGACTGTTCAAAGCACCGCCACTGCAGGATGAAGTGCAAAGCTAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100491.2