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Pregenerated sensors for DEFB42 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054763

Ensembl transcript IDs: ENSMUST00000067990.8, ENSMUST00000111203.2, ENSMUST00000186438.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCAGCGTCACCCTTATGCGTCACGTCCACTTTTTCTTGAGCTCTTaGGCCTCACAGACAGATTGGGAGTGTTTAATCATTCACATGGCC +
Preference number: 1 (lower is better)
Translates to: ASVTLMRHVHFFLSS*ASQTDWECLIIHMA
Trigger: GGCCATGTGAATGATTAAACACTCCCAATCTGTCTGTGAGGCCCAAGAGCTCAAGAAAAAGTGGACGTGACGCATAAGGGTGACGCTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067990.8
ENSMUST00000111203.2
ENSMUST00000186438.2
3UTR CAA 90 bp GGCCAGCGTCACCCTTATGCGTCACGTCCACTTTTTCTTGAGCTCTaGGGCCTCACAGACAGATTGGGAGTGTTTAATCATTCACATGGC +
Preference number: 2 (lower is better)
Translates to: GQRHPYASRPLFLEL*GLTDRLGVFNHSHG
Trigger: GCCATGTGAATGATTAAACACTCCCAATCTGTCTGTGAGGCCCAAGAGCTCAAGAAAAAGTGGACGTGACGCATAAGGGTGACGCTGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067990.8
ENSMUST00000111203.2
ENSMUST00000186438.2
3UTR CAA 90 bp GGTGCCATTTATTGCAAAGCTTCTTACAAAATGCCATCTGGGCTTTaGCCAGTAAACAGACACGTGGCCAGCGTCACCCTTATGCGTCAC +
Preference number: 2 (lower is better)
Translates to: GAIYCKASYKMPSGL*PVNRHVASVTLMRH
Trigger: GTGACGCATAAGGGTGACGCTGGCCACGTGTCTGTTTACTGGCAAAAGCCCAGATGGCATTTTGTAAGAAGCTTTGCAATAAATGGCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067990.8
3UTR CAA 90 bp GCGTCACGTCCACTTTTTCTTGAGCTCTTGGGCCTCACAGACAGATaGGGAGTGTTTAATCATTCACATGGCCTTTTAACTGGAGCTGTG +
Preference number: 2 (lower is better)
Translates to: ASRPLFLELLGLTDR*GVFNHSHGLLTGAV
Trigger: CACAGCTCCAGTTAAAAGGCCATGTGAATGATTAAACACTCCCAATCTGTCTGTGAGGCCCAAGAGCTCAAGAAAAAGTGGACGTGACGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067990.8
ENSMUST00000111203.2
ENSMUST00000186438.2
3UTR-3UTR TCA 90 bp ATTTATTGCAAAGCTTCTTACAAAATGCCATCTGGGCTTTTGCCAGTAAACAGAACGTCCACTTTTTCTTaGGCTCTTGGGCCTCACAGA +
Preference number: 2 (lower is better)
Translates to: IYCKASYKMPSGLLPVNRTSTFS*ALGPHR
Trigger: TCTGTGAGGCCCAAGAGCTCAAGAAAAAGTGGACGT...TCTGTTTACTGGCAAAAGCCCAGATGGCATTTTGTAAGAAGCTTTGCAATAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000067990.8
ENSMUST00000186438.2
3UTR-3UTR CAA 90 bp AGCTTCTTACAAAATGCCATCTGGGCTTTTGCCAGTAAACAGACACGTGGCCAGCACGTCCACTTTTTCTaGAGCTCTTGGGCCTCACAG +
Preference number: 3 (lower is better)
Translates to: SFLQNAIWAFASKQTRGQHVHFF*SSWASQ
Trigger: CTGTGAGGCCCAAGAGCTCAAGAAAAAGTGGACGTG...CTGGCCACGTGTCTGTTTACTGGCAAAAGCCCAGATGGCATTTTGTAAGAAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000067990.8
ENSMUST00000186438.2
3UTR CCA 72 bp ACCCTTATGCGTCACGTCCACTTTTTCTTGAGCTCTTaGGCCTCACAGACAGATTGGGAGTGTTTAATCATT +
Preference number: 3 (lower is better)
Translates to: TLMRHVHFFLSS*ASQTDWECLII
Trigger: AATGATTAAACACTCCCAATCTGTCTGTGAGGCCCAAGAGCTCAAGAAAAAGTGGACGTGACGCATAAGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067990.8
ENSMUST00000111203.2
ENSMUST00000186438.2
3UTR CCA 72 bp TGCCATTTATTGCAAAGCTTCTTACAAAATGCCATCTaGGCTTTTGCCAGTAAACAGACACGTGGCCAGCGT +
Preference number: 3 (lower is better)
Translates to: CHLLQSFLQNAI*AFASKQTRGQR
Trigger: ACGCTGGCCACGTGTCTGTTTACTGGCAAAAGCCCAGATGGCATTTTGTAAGAAGCTTTGCAATAAATGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067990.8
CDS-3UTR GCA 90 bp GGCCAGCGTCACCCTTATGCGTCACGTCCACTTTTTCTTGAGCTCTTGGGCCTCACGTCTCAAAGGATATaGCCTTATTCCCGATCGAAC +
Preference number: 4 (lower is better)
Translates to: GQRHPYASRPLFLELLGLTSQRI*PYSRSN
Trigger: GTTCGATCGGGAATAAGGGCATATCCTTTGAGACGT...GAGGCCCAAGAGCTCAAGAAAAAGTGGACGTGACGCATAAGGGTGACGCTGGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067990.8
ENSMUST00000111203.2
ENSMUST00000186438.2
CDS-3UTR TCA 90 bp CACCCTTATGCGTCACGTCCACTTTTTCTTGAGCTCTTGGGCCTCACAGACAGAATGATGTCACCAGGATaGACAGTAAGCATGAAAGAC +
Preference number: 4 (lower is better)
Translates to: HPYASRPLFLELLGLTDRMMSPG*TVSMKD
Trigger: GTCTTTCATGCTTACTGTTCATCCTGGTGACATCAT...TCTGTCTGTGAGGCCCAAGAGCTCAAGAAAAAGTGGACGTGACGCATAAGGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067990.8
ENSMUST00000111203.2
CDS-3UTR GCA 90 bp CCTTATGCGTCACGTCCACTTTTTCTTGAGCTCTTGGGCCTCACAGACAGATTGACGTCTCAAAGGATATaGCCTTATTCCCGATCGAAC +
Preference number: 4 (lower is better)
Translates to: PYASRPLFLELLGLTDRLTSQRI*PYSRSN
Trigger: GTTCGATCGGGAATAAGGGCATATCCTTTGAGACGT...CAATCTGTCTGTGAGGCCCAAGAGCTCAAGAAAAAGTGGACGTGACGCATAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067990.8
ENSMUST00000111203.2
ENSMUST00000186438.2
CDS-3UTR GCA 90 bp ACCCTTATGCGTCACGTCCACTTTTTCTTGAGCTCTTGGGCCTCACAGACAGATACGTCTCAAAGGATATaGCCTTATTCCCGATCGAAC +
Preference number: 4 (lower is better)
Translates to: TLMRHVHFFLSSWASQTDTSQRI*PYSRSN
Trigger: GTTCGATCGGGAATAAGGGCATATCCTTTGAGACGT...ATCTGTCTGTGAGGCCCAAGAGCTCAAGAAAAAGTGGACGTGACGCATAAGGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067990.8
ENSMUST00000111203.2
ENSMUST00000186438.2
3UTR CAA 72 bp CACCCTTATGCGTCACGTCCACTTTTTCTTGAGCTCTaGGGCCTCACAGACAGATTGGGAGTGTTTAATCAT +
Preference number: 4 (lower is better)
Translates to: HPYASRPLFLEL*GLTDRLGVFNH
Trigger: ATGATTAAACACTCCCAATCTGTCTGTGAGGCCCAAGAGCTCAAGAAAAAGTGGACGTGACGCATAAGGGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067990.8
ENSMUST00000111203.2
ENSMUST00000186438.2
3UTR CAA 72 bp TATTGCAAAGCTTCTTACAAAATGCCATCTGGGCTTTaGCCAGTAAACAGACACGTGGCCAGCGTCACCCTT +
Preference number: 4 (lower is better)
Translates to: YCKASYKMPSGL*PVNRHVASVTL
Trigger: AAGGGTGACGCTGGCCACGTGTCTGTTTACTGGCAAAAGCCCAGATGGCATTTTGTAAGAAGCTTTGCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067990.8
ENSMUST00000186438.2
CDS-3UTR TCA 90 bp ACCACGGGGTGCCATTTATTGCAAAGCTTCTTACAAAATGCCATCTGGGCTTTTATGATGTCACCAGGATaGACAGTAAGCATGAAAGAC +
Preference number: 4 (lower is better)
Translates to: TTGCHLLQSFLQNAIWAFMMSPG*TVSMKD
Trigger: GTCTTTCATGCTTACTGTTCATCCTGGTGACATCAT...AAAAGCCCAGATGGCATTTTGTAAGAAGCTTTGCAATAAATGGCACCCCGTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067990.8
CDS-3UTR TCA 90 bp CTTTTTCTTGAGCTCTTGGGCCTCACAGACAGATTGGGAGTGTTTAATCATTCACATATACCTTTGGTTTaGGGAAGTACAAAATCGGTA +
Preference number: 4 (lower is better)
Translates to: LFLELLGLTDRLGVFNHSHIPLV*GSTKSV
Trigger: TACCGATTTTGTACTTCCTCAAACCAAAGGTATATG...TGAATGATTAAACACTCCCAATCTGTCTGTGAGGCCCAAGAGCTCAAGAAAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067990.8
ENSMUST00000111203.2
CDS GCA 72 bp ACAAGCCTTCGATTGCGGTGCACGTCTCAAAGGATATaGCCTTATTCCCGATCGAACAGCGACCTGCAGGCA +
Preference number: 6 (lower is better)
Translates to: TSLRLRCTSQRI*PYSRSNSDLQA
Trigger: TGCCTGCAGGTCGCTGTTCGATCGGGAATAAGGGCATATCCTTTGAGACGTGCACCGCAATCGAAGGCTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067990.8
ENSMUST00000111203.2