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Pregenerated sensors for DEFB41 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067773

Ensembl transcript IDs: ENSMUST00000088463.2, ENSMUST00000097817.4

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TTCAAAAGATGCAGGAAAATGTATATTCCACTGCAGCTATGCAATGGTTTACTTGCATGGATGGAGATTTaGGCTGGGCTTCAGTGCACT +
Preference number: 2 (lower is better)
Translates to: FKRCRKMYIPLQLCNGLLAWMEI*AGLQCT
Trigger: AGTGCACTGAAGCCCAGCTCAAATCTCCATCCATGC...AAGTAAACCATTGCATAGCTGCAGTGGAATATACATTTTCCTGCATCTTTTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
3UTR-3UTR CCA 90 bp CTTCAAAAGATGCAGGAAAATGTATATTCCACTGCAGCTATGCAATGGTTTACTTGGTGTGTGCATGGATaGAGATTTGAGCTGGGCTTC +
Preference number: 2 (lower is better)
Translates to: LQKMQENVYSTAAMQWFTWCVHG*RFELGF
Trigger: GAAGCCCAGCTCAAATCTCCATCCATGCACACACCA...AGTAAACCATTGCATAGCTGCAGTGGAATATACATTTTCCTGCATCTTTTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
3UTR-3UTR CCA 90 bp TTCTCAGTTCTCAAACTTAATGGTGTGTGCATGGATGGAGATTTGAGCTGGGCTACTTCTTTTCTGGAATaGACAGTAAGTAGTACTTCT +
Preference number: 2 (lower is better)
Translates to: FSVLKLNGVCMDGDLSWATSFLE*TVSSTS
Trigger: AGAAGTACTACTTACTGTCCATTCCAGAAAAGAAGT...AGCCCAGCTCAAATCTCCATCCATGCACACACCATTAAGTTTGAGAACTGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
3UTR-3UTR GCA 90 bp CAAAAGATGCAGGAAAATGTATATTCCACTGCAGCTATGCAATGGTTTACTTCTAAACTTAATGGTGTGTaGATGGATGGAGATTTGAGC +
Preference number: 2 (lower is better)
Translates to: QKMQENVYSTAAMQWFTSKLNGV*MDGDLS
Trigger: GCTCAAATCTCCATCCATGCACACACCATTAAGTTT...AGAAGTAAACCATTGCATAGCTGCAGTGGAATATACATTTTCCTGCATCTTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
3UTR TCA 72 bp TTCTCAAACTTAATGGTGTGTGCATGGATGGAGATTTaGGCTGGGCTTCAGTGCACTTCTTTTCTGGAATGG +
Preference number: 3 (lower is better)
Translates to: FSNLMVCAWMEI*AGLQCTSFLEW
Trigger: CCATTCCAGAAAAGAAGTGCACTGAAGCCCAGCTCAAATCTCCATCCATGCACACACCATTAAGTTTGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
3UTR GCA 72 bp ATGGTTTACTTCTCAGTTCTCAAACTTAATGGTGTGTaGATGGATGGAGATTTGAGCTGGGCTTCAGTGCAC +
Preference number: 3 (lower is better)
Translates to: MVYFSVLKLNGV*MDGDLSWASVH
Trigger: GTGCACTGAAGCCCAGCTCAAATCTCCATCCATGCACACACCATTAAGTTTGAGAACTGAGAAGTAAACCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
3UTR-3UTR CAA 90 bp TTCAAAAGATGCAGGAAAATGTATATTCCACTGCAGCTATGCAATGGTTTACTTTGCATGGATGGAGATTaGAGCTGGGCTTCAGTGCAC +
Preference number: 3 (lower is better)
Translates to: FKRCRKMYIPLQLCNGLLCMDGD*SWASVH
Trigger: GTGCACTGAAGCCCAGCTCAAATCTCCATCCATGCA...AAGTAAACCATTGCATAGCTGCAGTGGAATATACATTTTCCTGCATCTTTTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
3UTR CCA 72 bp ATGCAGGAAAATGTATATTCCACTGCAGCTATGCAATaGTTTACTTCTCAGTTCTCAAACTTAATGGTGTGT +
Preference number: 3 (lower is better)
Translates to: MQENVYSTAAMQ*FTSQFSNLMVC
Trigger: ACACACCATTAAGTTTGAGAACTGAGAAGTAAACCATTGCATAGCTGCAGTGGAATATACATTTTCCTGCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
3UTR GCA 72 bp TATTCTTCAAAAGATGCAGGAAAATGTATATTCCACTaGAGCTATGCAATGGTTTACTTCTCAGTTCTCAAA +
Preference number: 3 (lower is better)
Translates to: YSSKDAGKCIFH*SYAMVYFSVLK
Trigger: TTTGAGAACTGAGAAGTAAACCATTGCATAGCTGCAGTGGAATATACATTTTCCTGCATCTTTTGAAGAATA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
3UTR CAA 72 bp GTTCTCAAACTTAATGGTGTGTGCATGGATGGAGATTaGAGCTGGGCTTCAGTGCACTTCTTTTCTGGAATG +
Preference number: 4 (lower is better)
Translates to: VLKLNGVCMDGD*SWASVHFFSGM
Trigger: CATTCCAGAAAAGAAGTGCACTGAAGCCCAGCTCAAATCTCCATCCATGCACACACCATTAAGTTTGAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
CDS-3UTR TCA 90 bp CTTCAAAAGATGCAGGAAAATGTATATTCCACTGCAGCTATGCAATGGTTTACTACTGGTTCCTCCATCTaGTACAGTATCCATAATCAT +
Preference number: 4 (lower is better)
Translates to: LQKMQENVYSTAAMQWFTTGSSI*YSIHNH
Trigger: ATGATTATGGATACTGTATCAGATGGAGGAACCAGT...AGTAAACCATTGCATAGCTGCAGTGGAATATACATTTTCCTGCATCTTTTGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
CDS-3UTR TCA 90 bp CAAAAGATGCAGGAAAATGTATATTCCACTGCAGCTATGCAATGGTTTACTTCTTCTCTATTCCATTCTTaGTGTCAATATGACTTCTGG +
Preference number: 4 (lower is better)
Translates to: QKMQENVYSTAAMQWFTSSLFHS*CQYDFW
Trigger: CCAGAAGTCATATTGACATCAAGAATGGAATAGAGA...AGAAGTAAACCATTGCATAGCTGCAGTGGAATATACATTTTCCTGCATCTTTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
CDS GCA 90 bp GTTCCTTTTCAGAGCACTGAAGTTTACAGTGACCTCTACGCATTTTaGATTCTTTCCTCAAATCCAAGCTACCATACTCAGGATAACTCT +
Preference number: 5 (lower is better)
Translates to: VPFQSTEVYSDLYAF*ILSSNPSYHTQDNS
Trigger: AGAGTTATCCTGAGTATGGTAGCTTGGATTTGAGGAAAGAATGCAAAATGCGTAGAGGTCACTGTAAACTTCAGTGCTCTGAAAAGGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097817.4
CDS TCA 90 bp TCTTACACATTCCTCGCACTTTTTCACATCTCTCTATTCCATTCTTaGTGTCAATATGACTTCTGGCTGTTAATATTGTGGCCCCAAAGA +
Preference number: 5 (lower is better)
Translates to: SYTFLALFHISLFHS*CQYDFWLLILWPQR
Trigger: TCTTTGGGGCCACAATATTAACAGCCAGAAGTCATATTGACATCAAGAATGGAATAGAGAGATGTGAAAAAGTGCGAGGAATGTGTAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
CDS GCA 72 bp CAGAGCACTGAAGTTTACAGTGACCTCTACGCATTTTaGATTCTTTCCTCAAATCCAAGCTACCATACTCAG +
Preference number: 6 (lower is better)
Translates to: QSTEVYSDLYAF*ILSSNPSYHTQ
Trigger: CTGAGTATGGTAGCTTGGATTTGAGGAAAGAATGCAAAATGCGTAGAGGTCACTGTAAACTTCAGTGCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097817.4
CDS TCA 72 bp TTTTCACATCTCTCTATTCCATTCTTGATGTCAATATaGCTTCTGGCTGTTAATATTGTGGCCCCAAAGAGC +
Preference number: 6 (lower is better)
Translates to: FSHLSIPFLMSI*LLAVNIVAPKS
Trigger: GCTCTTTGGGGCCACAATATTAACAGCCAGAAGTCATATTGACATCAAGAATGGAATAGAGAGATGTGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2
CDS TCA 72 bp TTCCTCGCACTTTTTCACATCTCTCTATTCCATTCTTaGTGTCAATATGACTTCTGGCTGTTAATATTGTGG +
Preference number: 6 (lower is better)
Translates to: FLALFHISLFHS*CQYDFWLLILW
Trigger: CCACAATATTAACAGCCAGAAGTCATATTGACATCAAGAATGGAATAGAGAGATGTGAAAAAGTGCGAGGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088463.2