Pregenerated sensors for DEFB4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059230Ensembl transcript IDs: ENSMUST00000081017.3
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTGCAAATGGTTGTTATAAAGGTCAAAAGAAGGTGTGCATCCCCTAGAACTGGAATTTGTGAATCTTCATaGAGGAGCAAATTCTGGCAA | + |
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Preference number: 2 (lower is better) Translates to: LQMVVIKVKRRCASPRTGICESS*RSKFWQ Trigger: TTGCCAGAATTTGCTCCTCCATGAAGATTCACAAAT...TCCAGTTCTAGGGGATGCACACCTTCTTTTGACCTTTATAACAACCATTTGCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| 3UTR-3UTR CCA 90 bp | CAAATGGTTGTTATAAAGGTCAAAAGAAGGTGTGCATCCCCTAGAACTGGAGTTTGGAGGAGCAAATTCTaGCAATTTATTCATCTTGCT | + |
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Preference number: 2 (lower is better) Translates to: QMVVIKVKRRCASPRTGVWRSKF*QFIHLA Trigger: AGCAAGATGAATAAATTGCCAGAATTTGCTCCTCCA...AACTCCAGTTCTAGGGGATGCACACCTTCTTTTGACCTTTATAACAACCATTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| 3UTR-3UTR CAA 90 bp | CTGCAAATGGTTGTTATAAAGGTCAAAAGAAGGTGTGCATCCCCTAGAACTGGAGGCAATTTATTCATCTaGCTGGTTCTTCGTCTTTTT | + |
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Preference number: 3 (lower is better) Translates to: LQMVVIKVKRRCASPRTGGNLFI*LVLRLF Trigger: AAAAAGACGAAGAACCAGCAAGATGAATAAATTGCC...TCCAGTTCTAGGGGATGCACACCTTCTTTTGACCTTTATAACAACCATTTGCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS-3UTR CCA 90 bp | CTGCAAATGGTTGTTATAAAGGTCAAAAGAAGGTGTGCATCCCCTAGAACTGGAGGTAAAGGCTGCAAGTaGAGACAGCAGCACCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LQMVVIKVKRRCASPRTGGKGCK*RQQHQE Trigger: CTCCTGGTGCTGCTGTCTCCACTTGCAGCCTTTACC...TCCAGTTCTAGGGGATGCACACCTTCTTTTGACCTTTATAACAACCATTTGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS-3UTR GCA 90 bp | CTGCAAATGGTTGTTATAAAGGTCAAAAGAAGGTGTGCATCCCCTAGAACTGGAAATTTGGGTAAAGGCTaGAAGTGGAGACAGCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: LQMVVIKVKRRCASPRTGNLGKG*KWRQQH Trigger: GTGCTGCTGTCTCCACTTGCAGCCTTTACCCAAATT...TCCAGTTCTAGGGGATGCACACCTTCTTTTGACCTTTATAACAACCATTTGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS-3UTR TCA 90 bp | CAAATGGTTGTTATAAAGGTCAAAAGAAGGTGTGCATCCCCTAGAACTGGAGTTGCACCAGGAGAAATGTaGAGAGAAGGTAATGGATCC | + |
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Preference number: 4 (lower is better) Translates to: QMVVIKVKRRCASPRTGVAPGEM*REGNGS Trigger: GGATCCATTACCTTCTCTTCACATTTCTCCTGGTGC...AACTCCAGTTCTAGGGGATGCACACCTTCTTTTGACCTTTATAACAACCATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS-3UTR CCA 90 bp | CAAATGGTTGTTATAAAGGTCAAAAGAAGGTGTGCATCCCCTAGAACTGGAGTTGGATTGTTGATAATTTaGGTAAAGGCTGCAAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: QMVVIKVKRRCASPRTGVGLLII*VKAASG Trigger: TCCACTTGCAGCCTTTACCCAAATTATCAACAATCC...AACTCCAGTTCTAGGGGATGCACACCTTCTTTTGACCTTTATAACAACCATTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS-3UTR CCA 90 bp | GTTATAAAGGTCAAAAGAAGGTGTGCATCCCCTAGAACTGGAGTTAGAGAAGGTCATCTGACTTTAAAATaGCCACAATTGCCAATCTGT | + |
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Preference number: 4 (lower is better) Translates to: VIKVKRRCASPRTGVREGHLTLK*PQLPIC Trigger: ACAGATTGGCAATTGTGGCCATTTTAAAGTCAGATG...ACCTTCTCTAACTCCAGTTCTAGGGGATGCACACCTTCTTTTGACCTTTATAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS-3UTR CCA 90 bp | TTTGTGAATCTTCATGGAGGAGCAAATTCTGGCAATTTATTCATCTTGCTGGTTGGTCATGCATGTTATTaGATTGTTGATAATTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: FVNLHGGANSGNLFILLVGHACY*IVDNLG Trigger: ACCCAAATTATCAACAATCCAATAACATGCATGACC...AACCAGCAAGATGAATAAATTGCCAGAATTTGCTCCTCCATGAAGATTCACAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS CCA 90 bp | CATATGGCTCCATTGGTCATGCATGTTATTGGATTGTTGATAATTTaGGTAAAGGCTGCAAGTGGAGACAGCAGCACCAGGAGAAATGTG | + |
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Preference number: 5 (lower is better) Translates to: HMAPLVMHVIGLLII*VKAASGDSSTRRNV Trigger: CACATTTCTCCTGGTGCTGCTGTCTCCACTTGCAGCCTTTACCCAAATTATCAACAATCCAATAACATGCATGACCAATGGAGCCATATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS CCA 90 bp | CATGCATGTTATTGGATTGTTGATAATTTGGGTAAAGGCTGCAAGTaGAGACAGCAGCACCAGGAGAAATGTGAAGAGAAGGTAATGGAT | + |
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Preference number: 5 (lower is better) Translates to: HACYWIVDNLGKGCK*RQQHQEKCEEKVMD Trigger: ATCCATTACCTTCTCTTCACATTTCTCCTGGTGCTGCTGTCTCCACTTGCAGCCTTTACCCAAATTATCAACAATCCAATAACATGCATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS-3UTR CAA 90 bp | CAAATGGTTGTTATAAAGGTCAAAAGAAGGTGTGCATCCCCTAGAACTGGAGTTTTAAAATGGCCACAATaGCCAATCTGTCGAAAAGCG | + |
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Preference number: 5 (lower is better) Translates to: QMVVIKVKRRCASPRTGVLKWPQ*PICRKA Trigger: CGCTTTTCGACAGATTGGCAATTGTGGCCATTTTAA...AACTCCAGTTCTAGGGGATGCACACCTTCTTTTGACCTTTATAACAACCATTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS CAA 72 bp | AAAGCGGTAGGGCACGGACCCCAGCATATGGCTCCATaGGTCATGCATGTTATTGGATTGTTGATAATTTGG | + |
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Preference number: 6 (lower is better) Translates to: KAVGHGPQHMAP*VMHVIGLLIIW Trigger: CCAAATTATCAACAATCCAATAACATGCATGACCAATGGAGCCATATGCTGGGGTCCGTGCCCTACCGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS CAA 72 bp | CTTATCTTACAGCATCTGACTTTAAAATGGCCACAATaGCCAATCTGTCGAAAAGCGGTAGGGCACGGACCC | + |
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Preference number: 6 (lower is better) Translates to: LILQHLTLKWPQ*PICRKAVGHGP Trigger: GGGTCCGTGCCCTACCGCTTTTCGACAGATTGGCAATTGTGGCCATTTTAAAGTCAGATGCTGTAAGATAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS CCA 72 bp | CCATTGGTCATGCATGTTATTGGATTGTTGATAATTTaGGTAAAGGCTGCAAGTGGAGACAGCAGCACCAGG | + |
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Preference number: 6 (lower is better) Translates to: PLVMHVIGLLII*VKAASGDSSTR Trigger: CCTGGTGCTGCTGTCTCCACTTGCAGCCTTTACCCAAATTATCAACAATCCAATAACATGCATGACCAATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS CAA 90 bp | GCATATGGCTCCATTGGTCATGCATGTTATTGGATTGTTGATAATTaGGGTAAAGGCTGCAAGTGGAGACAGCAGCACCAGGAGAAATGT | + |
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Preference number: 6 (lower is better) Translates to: AYGSIGHACYWIVDN*GKGCKWRQQHQEKC Trigger: ACATTTCTCCTGGTGCTGCTGTCTCCACTTGCAGCCTTTACCCAAATTATCAACAATCCAATAACATGCATGACCAATGGAGCCATATGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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| CDS CAA 72 bp | CAGCATATGGCTCCATTGGTCATGCATGTTATTGGATaGTTGATAATTTGGGTAAAGGCTGCAAGTGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: QHMAPLVMHVIG*LIIWVKAASGD Trigger: GTCTCCACTTGCAGCCTTTACCCAAATTATCAACAATCCAATAACATGCATGACCAATGGAGCCATATGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081017.3 |
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