Pregenerated sensors for DEFB37 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053695

Ensembl transcript IDs: ENSMUST00000066282.4

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	CTACACTTCAGTATGTTTTCCTTTATTACAGCAATGGTTTCACTTTCTTCTTGCGGCGTGGGCAGTTCTTaGGGCGACAGGTGTCTTTAT	+
Preference number: 4 (lower is better) Translates to: LHFSMFSFITAMVSLSSCGVGSS*GDRCLY Trigger: ATAAAGACACCTGTCGCCTCAAGAACTGCCCACGCC...GCAAGAAGAAAGTGAAACCATTGCTGTAATAAAGGAAAACATACTGAAGTGTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066282.4
CDS-3UTR TCA 90 bp	CTACACTTCAGTATGTTTTCCTTTATTACAGCAATGGTTTCACTTTCTTCTTGCGTGCCAACTACATTATaGAGGCGTGGGCAGTTCTTG	+
Preference number: 4 (lower is better) Translates to: LHFSMFSFITAMVSLSSCVPTTL*RRGQFL Trigger: CAAGAACTGCCCACGCCTTCATAATGTAGTTGGCAC...GCAAGAAGAAAGTGAAACCATTGCTGTAATAAAGGAAAACATACTGAAGTGTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066282.4
CDS-3UTR CCA 90 bp	CTACACTTCAGTATGTTTTCCTTTATTACAGCAATGGTTTCACTTTCTTCTTGCGGTTGTTCTGGAAGTTaGATAGAGAGAGGAGCAGCA	+
Preference number: 4 (lower is better) Translates to: LHFSMFSFITAMVSLSSCGCSGS*IERGAA Trigger: TGCTGCTCCTCTCTCTATCCAACTTCCAGAACAACC...GCAAGAAGAAAGTGAAACCATTGCTGTAATAAAGGAAAACATACTGAAGTGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066282.4
CDS-3UTR CCA 90 bp	CTACACTTCAGTATGTTTTCCTTTATTACAGCAATGGTTTCACTTTCTTCTTGCGTCAAGCATAGCAACTaGGTTGTTCTGGAAGTTGGA	+
Preference number: 4 (lower is better) Translates to: LHFSMFSFITAMVSLSSCVKHSN*VVLEVG Trigger: TCCAACTTCCAGAACAACCCAGTTGCTATGCTTGAC...GCAAGAAGAAAGTGAAACCATTGCTGTAATAAAGGAAAACATACTGAAGTGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066282.4
CDS-3UTR GCA 90 bp	CACTTCAGTATGTTTTCCTTTATTACAGCAATGGTTTCACTTTCTTCTTGCAAGTTTTGTGGCAACACTTaGCTTTTCCTTCATAACAGG	+
Preference number: 4 (lower is better) Translates to: HFSMFSFITAMVSLSSCKFCGNT*LFLHNR Trigger: CCTGTTATGAAGGAAAAGGCAAGTGTTGCCACAAAA...CTTGCAAGAAGAAAGTGAAACCATTGCTGTAATAAAGGAAAACATACTGAAGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066282.4
CDS GCA 90 bp	GCGTGGGCAGTTCTTGAGGCGACAGGTGTCTTTATTCTCAATACATaGTATTGTGTCAAGCATAGCAACTGGGTTGTTCTGGAAGTTGGA	+
Preference number: 5 (lower is better) Translates to: AWAVLEATGVFILNT*YCVKHSNWVVLEVG Trigger: TCCAACTTCCAGAACAACCCAGTTGCTATGCTTGACACAATAGCATGTATTGAGAATAAAGACACCTGTCGCCTCAAGAACTGCCCACGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066282.4
CDS-3UTR CAA 90 bp	CACTTCAGTATGTTTTCCTTTATTACAGCAATGGTTTCACTTTCTTCTTGCAAGGGGTTGTTCTGGAAGTaGGATAGAGAGAGGAGCAGC	+
Preference number: 5 (lower is better) Translates to: HFSMFSFITAMVSLSSCKGLFWK*DRERSS Trigger: GCTGCTCCTCTCTCTATCCAACTTCCAGAACAACCC...CTTGCAAGAAGAAAGTGAAACCATTGCTGTAATAAAGGAAAACATACTGAAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066282.4
CDS-3UTR CAA 90 bp	CTACACTTCAGTATGTTTTCCTTTATTACAGCAATGGTTTCACTTTCTTCTTGCAGCATAGCAACTGGGTaGTTCTGGAAGTTGGATAGA	+
Preference number: 5 (lower is better) Translates to: LHFSMFSFITAMVSLSSCSIATG*FWKLDR Trigger: TCTATCCAACTTCCAGAACAACCCAGTTGCTATGCT...GCAAGAAGAAAGTGAAACCATTGCTGTAATAAAGGAAAACATACTGAAGTGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066282.4
CDS TCA 72 bp	AGGTGCCAACTACATTATGAAGGCGTGGGCAGTTCTTaGGGCGACAGGTGTCTTTATTCTCAATACATGCTA	+
Preference number: 6 (lower is better) Translates to: RCQLHYEGVGSS*GDRCLYSQYML Trigger: TAGCATGTATTGAGAATAAAGACACCTGTCGCCTCAAGAACTGCCCACGCCTTCATAATGTAGTTGGCACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066282.4
CDS GCA 72 bp	GTTCTTGAGGCGACAGGTGTCTTTATTCTCAATACATaGTATTGTGTCAAGCATAGCAACTGGGTTGTTCTG	+
Preference number: 6 (lower is better) Translates to: VLEATGVFILNT*YCVKHSNWVVL Trigger: CAGAACAACCCAGTTGCTATGCTTGACACAATAGCATGTATTGAGAATAAAGACACCTGTCGCCTCAAGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066282.4

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