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Pregenerated sensors for DEFB36 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044863

Ensembl transcript IDs: ENSMUST00000058086.6

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 72 bp GAACTCAAGAATCCATGGGGTCAACCTAGGACAGCTTaGCCATCTGTATTATCTGGGCTTCAGGCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: ELKNPWGQPRTA*PSVLSGLQASG
Trigger: CCCAGAAGCCTGAAGCCCAGATAATACAGATGGCAAAGCTGTCCTAGGTTGACCCCATGGATTCTTGAGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058086.6
CDS TCA 90 bp CTGGAGCATCGGTGGCGGCACTTGCCGTGGAGATTCCAGCATTTCTaGGCATCACCTGGAGTGAGCTGGGACACGAGCAGGAGCGCAGCC +
Preference number: 5 (lower is better)
Translates to: LEHRWRHLPWRFQHF*ASPGVSWDTSRSAA
Trigger: GGCTGCGCTCCTGCTCGTGTCCCAGCTCACTCCAGGTGATGCTCAGAAATGCTGGAATCTCCACGGCAAGTGCCGCCACCGATGCTCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058086.6
CDS CCA 90 bp GTGGCGGCACTTGCCGTGGAGATTCCAGCATTTCTGAGCATCACCTaGAGTGAGCTGGGACACGAGCAGGAGCGCAGCCAAAGTCAGCAG +
Preference number: 5 (lower is better)
Translates to: VAALAVEIPAFLSIT*SELGHEQERSQSQQ
Trigger: CTGCTGACTTTGGCTGCGCTCCTGCTCGTGTCCCAGCTCACTCCAGGTGATGCTCAGAAATGCTGGAATCTCCACGGCAAGTGCCGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058086.6
CDS TCA 90 bp GGCACTTGCCGTGGAGATTCCAGCATTTCTGAGCATCACCTGGAGTaGGCTGGGACACGAGCAGGAGCGCAGCCAAAGTCAGCAGCAGGA +
Preference number: 5 (lower is better)
Translates to: GTCRGDSSISEHHLE*AGTRAGAQPKSAAG
Trigger: TCCTGCTGCTGACTTTGGCTGCGCTCCTGCTCGTGTCCCAGCTCACTCCAGGTGATGCTCAGAAATGCTGGAATCTCCACGGCAAGTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058086.6
CDS GCA 90 bp GCTTCGGCTGGTATTTGGGCTTCACGCAACACATCTTCCCGTTTGTaGAGTAGACGTAGACGCTCTCCTTCCTGGAGCATCGGTGGCGGC +
Preference number: 5 (lower is better)
Translates to: ASAGIWASRNTSSRL*SRRRRSPSWSIGGG
Trigger: GCCGCCACCGATGCTCCAGGAAGGAGAGCGTCTACGTCTACTGCACAAACGGGAAGATGTGTTGCGTGAAGCCCAAATACCAGCCGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058086.6
CDS CCA 90 bp AACACATCTTCCCGTTTGTGCAGTAGACGTAGACGCTCTCCTTCCTaGAGCATCGGTGGCGGCACTTGCCGTGGAGATTCCAGCATTTCT +
Preference number: 5 (lower is better)
Translates to: NTSSRLCSRRRRSPS*SIGGGTCRGDSSIS
Trigger: AGAAATGCTGGAATCTCCACGGCAAGTGCCGCCACCGATGCTCCAGGAAGGAGAGCGTCTACGTCTACTGCACAAACGGGAAGATGTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058086.6
CDS CCA 72 bp CTTGCCGTGGAGATTCCAGCATTTCTGAGCATCACCTaGAGTGAGCTGGGACACGAGCAGGAGCGCAGCCAA +
Preference number: 6 (lower is better)
Translates to: LAVEIPAFLSIT*SELGHEQERSQ
Trigger: TTGGCTGCGCTCCTGCTCGTGTCCCAGCTCACTCCAGGTGATGCTCAGAAATGCTGGAATCTCCACGGCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058086.6
CDS TCA 72 bp CGTGGAGATTCCAGCATTTCTGAGCATCACCTGGAGTaGGCTGGGACACGAGCAGGAGCGCAGCCAAAGTCA +
Preference number: 6 (lower is better)
Translates to: RGDSSISEHHLE*AGTRAGAQPKS
Trigger: TGACTTTGGCTGCGCTCCTGCTCGTGTCCCAGCTCACTCCAGGTGATGCTCAGAAATGCTGGAATCTCCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058086.6
CDS CAA 90 bp TTGGCTTCGGCTGGTATTTGGGCTTCACGCAACACATCTTCCCGTTaGTGCAGTAGACGTAGACGCTCTCCTTCCTGGAGCATCGGTGGC +
Preference number: 6 (lower is better)
Translates to: LASAGIWASRNTSSR*CSRRRRSPSWSIGG
Trigger: GCCACCGATGCTCCAGGAAGGAGAGCGTCTACGTCTACTGCACAAACGGGAAGATGTGTTGCGTGAAGCCCAAATACCAGCCGAAGCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058086.6
CDS GCA 72 bp GGTATTTGGGCTTCACGCAACACATCTTCCCGTTTGTaGAGTAGACGTAGACGCTCTCCTTCCTGGAGCATC +
Preference number: 6 (lower is better)
Translates to: GIWASRNTSSRL*SRRRRSPSWSI
Trigger: GATGCTCCAGGAAGGAGAGCGTCTACGTCTACTGCACAAACGGGAAGATGTGTTGCGTGAAGCCCAAATACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058086.6