Pregenerated sensors for DEFB36 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044863Ensembl transcript IDs: ENSMUST00000058086.6
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CAA 72 bp | GAACTCAAGAATCCATGGGGTCAACCTAGGACAGCTTaGCCATCTGTATTATCTGGGCTTCAGGCTTCTGGG | + |
Preference number: 4 (lower is better) Translates to: ELKNPWGQPRTA*PSVLSGLQASG Trigger: CCCAGAAGCCTGAAGCCCAGATAATACAGATGGCAAAGCTGTCCTAGGTTGACCCCATGGATTCTTGAGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058086.6 |
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CDS TCA 90 bp | CTGGAGCATCGGTGGCGGCACTTGCCGTGGAGATTCCAGCATTTCTaGGCATCACCTGGAGTGAGCTGGGACACGAGCAGGAGCGCAGCC | + |
Preference number: 5 (lower is better) Translates to: LEHRWRHLPWRFQHF*ASPGVSWDTSRSAA Trigger: GGCTGCGCTCCTGCTCGTGTCCCAGCTCACTCCAGGTGATGCTCAGAAATGCTGGAATCTCCACGGCAAGTGCCGCCACCGATGCTCCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058086.6 |
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CDS CCA 90 bp | GTGGCGGCACTTGCCGTGGAGATTCCAGCATTTCTGAGCATCACCTaGAGTGAGCTGGGACACGAGCAGGAGCGCAGCCAAAGTCAGCAG | + |
Preference number: 5 (lower is better) Translates to: VAALAVEIPAFLSIT*SELGHEQERSQSQQ Trigger: CTGCTGACTTTGGCTGCGCTCCTGCTCGTGTCCCAGCTCACTCCAGGTGATGCTCAGAAATGCTGGAATCTCCACGGCAAGTGCCGCCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058086.6 |
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CDS TCA 90 bp | GGCACTTGCCGTGGAGATTCCAGCATTTCTGAGCATCACCTGGAGTaGGCTGGGACACGAGCAGGAGCGCAGCCAAAGTCAGCAGCAGGA | + |
Preference number: 5 (lower is better) Translates to: GTCRGDSSISEHHLE*AGTRAGAQPKSAAG Trigger: TCCTGCTGCTGACTTTGGCTGCGCTCCTGCTCGTGTCCCAGCTCACTCCAGGTGATGCTCAGAAATGCTGGAATCTCCACGGCAAGTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058086.6 |
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CDS GCA 90 bp | GCTTCGGCTGGTATTTGGGCTTCACGCAACACATCTTCCCGTTTGTaGAGTAGACGTAGACGCTCTCCTTCCTGGAGCATCGGTGGCGGC | + |
Preference number: 5 (lower is better) Translates to: ASAGIWASRNTSSRL*SRRRRSPSWSIGGG Trigger: GCCGCCACCGATGCTCCAGGAAGGAGAGCGTCTACGTCTACTGCACAAACGGGAAGATGTGTTGCGTGAAGCCCAAATACCAGCCGAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058086.6 |
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CDS CCA 90 bp | AACACATCTTCCCGTTTGTGCAGTAGACGTAGACGCTCTCCTTCCTaGAGCATCGGTGGCGGCACTTGCCGTGGAGATTCCAGCATTTCT | + |
Preference number: 5 (lower is better) Translates to: NTSSRLCSRRRRSPS*SIGGGTCRGDSSIS Trigger: AGAAATGCTGGAATCTCCACGGCAAGTGCCGCCACCGATGCTCCAGGAAGGAGAGCGTCTACGTCTACTGCACAAACGGGAAGATGTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058086.6 |
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CDS CCA 72 bp | CTTGCCGTGGAGATTCCAGCATTTCTGAGCATCACCTaGAGTGAGCTGGGACACGAGCAGGAGCGCAGCCAA | + |
Preference number: 6 (lower is better) Translates to: LAVEIPAFLSIT*SELGHEQERSQ Trigger: TTGGCTGCGCTCCTGCTCGTGTCCCAGCTCACTCCAGGTGATGCTCAGAAATGCTGGAATCTCCACGGCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058086.6 |
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CDS TCA 72 bp | CGTGGAGATTCCAGCATTTCTGAGCATCACCTGGAGTaGGCTGGGACACGAGCAGGAGCGCAGCCAAAGTCA | + |
Preference number: 6 (lower is better) Translates to: RGDSSISEHHLE*AGTRAGAQPKS Trigger: TGACTTTGGCTGCGCTCCTGCTCGTGTCCCAGCTCACTCCAGGTGATGCTCAGAAATGCTGGAATCTCCACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058086.6 |
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CDS CAA 90 bp | TTGGCTTCGGCTGGTATTTGGGCTTCACGCAACACATCTTCCCGTTaGTGCAGTAGACGTAGACGCTCTCCTTCCTGGAGCATCGGTGGC | + |
Preference number: 6 (lower is better) Translates to: LASAGIWASRNTSSR*CSRRRRSPSWSIGG Trigger: GCCACCGATGCTCCAGGAAGGAGAGCGTCTACGTCTACTGCACAAACGGGAAGATGTGTTGCGTGAAGCCCAAATACCAGCCGAAGCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058086.6 |
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CDS GCA 72 bp | GGTATTTGGGCTTCACGCAACACATCTTCCCGTTTGTaGAGTAGACGTAGACGCTCTCCTTCCTGGAGCATC | + |
Preference number: 6 (lower is better) Translates to: GIWASRNTSSRL*SRRRRSPSWSI Trigger: GATGCTCCAGGAAGGAGAGCGTCTACGTCTACTGCACAAACGGGAAGATGTGTTGCGTGAAGCCCAAATACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058086.6 |