Pregenerated sensors for DEFB34 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052554

Ensembl transcript IDs: ENSMUST00000064475.4

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CCCGAGCCTTCATCTGACTGGTTGCCCTTGCTCCTTCCACAGGACTaGACTGTCACACAGCACTTTAGATTCTTCCAGCAGAGAGCAACA	+
Preference number: 5 (lower is better) Translates to: PEPSSDWLPLLLPQD*TVTQHFRFFQQRAT Trigger: TGTTGCTCTCTGCTGGAAGAATCTAAAGTGCTGTGTGACAGTCCAGTCCTGTGGAAGGAGCAAGGGCAACCAGTCAGATGAAGGCTCGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064475.4
CDS CCA 72 bp	CCCCGAGTGCCCATGTGGCCCGAGCCTTCATCTGACTaGTTGCCCTTGCTCCTTCCACAGGACTGGACTGTC	+
Preference number: 6 (lower is better) Translates to: PRVPMWPEPSSD*LPLLLPQDWTV Trigger: GACAGTCCAGTCCTGTGGAAGGAGCAAGGGCAACCAGTCAGATGAAGGCTCGGGCCACATGGGCACTCGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064475.4
CDS GCA 72 bp	GAGTGCCCATGTGGCCCGAGCCTTCATCTGACTGGTTaGCCTTGCTCCTTCCACAGGACTGGACTGTCACAC	+
Preference number: 6 (lower is better) Translates to: ECPCGPSLHLTG*PCSFHRTGLSH Trigger: GTGTGACAGTCCAGTCCTGTGGAAGGAGCAAGGGCAACCAGTCAGATGAAGGCTCGGGCCACATGGGCACTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064475.4
CDS CAA 72 bp	CCCATGTGGCCCGAGCCTTCATCTGACTGGTTGCCCTaGCTCCTTCCACAGGACTGGACTGTCACACAGCAC	+
Preference number: 6 (lower is better) Translates to: PMWPEPSSDWLP*LLPQDWTVTQH Trigger: GTGCTGTGTGACAGTCCAGTCCTGTGGAAGGAGCAAGGGCAACCAGTCAGATGAAGGCTCGGGCCACATGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064475.4
CDS CAA 90 bp	CCCCGAGTGCCCATGTGGCCCGAGCCTTCATCTGACTGGTTGCCCTaGCTCCTTCCACAGGACTGGACTGTCACACAGCACTTTAGATTC	+
Preference number: 6 (lower is better) Translates to: PRVPMWPEPSSDWLP*LLPQDWTVTQHFRF Trigger: GAATCTAAAGTGCTGTGTGACAGTCCAGTCCTGTGGAAGGAGCAAGGGCAACCAGTCAGATGAAGGCTCGGGCCACATGGGCACTCGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064475.4
CDS GCA 72 bp	CCATGTGGCCCGAGCCTTCATCTGACTGGTTGCCCTTaGTCCTTCCACAGGACTGGACTGTCACACAGCACT	+
Preference number: 6 (lower is better) Translates to: PCGPSLHLTGCP*SFHRTGLSHST Trigger: AGTGCTGTGTGACAGTCCAGTCCTGTGGAAGGAGCAAGGGCAACCAGTCAGATGAAGGCTCGGGCCACATGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064475.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu