Pregenerated sensors for DEFB33 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074454

Ensembl transcript IDs: ENSMUST00000098908.4

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	TGGTGTTTTTATTTCCCAGAAATCAGAGCAGTTGACTaGTCTCTGGCAGTACTGCATGTATCAGCAACTGGC	+
Preference number: 3 (lower is better) Translates to: WCFYFPEIRAVD*SLAVLHVSATG Trigger: GCCAGTTGCTGATACATGCAGTACTGCCAGAGAGCAGTCAACTGCTCTGATTTCTGGGAAATAAAAACACCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098908.4
CDS-3UTR TCA 90 bp	GCTGTACATCGTGGTGTTTTTATTTCCCAGAAATCAGAGCAGTTGACTGCTCTCCGCCCTGATGTAGTCTaGGCAAGACACACAAGGAGG	+
Preference number: 4 (lower is better) Translates to: AVHRGVFISQKSEQLTALRPDVV*ARHTRR Trigger: CCTCCTTGTGTGTCTTGCTCAGACTACATCAGGGCG...GAGAGCAGTCAACTGCTCTGATTTCTGGGAAATAAAAACACCACGATGTACAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098908.4
CDS-3UTR GCA 90 bp	TGTACATCGTGGTGTTTTTATTTCCCAGAAATCAGAGCAGTTGACTGCTCTCTGTCGACTCTTGCATTCTaGAGGCAGGATAGAGCATCC	+
Preference number: 4 (lower is better) Translates to: CTSWCFYFPEIRAVDCSLSTLAF*RQDRAS Trigger: GGATGCTCTATCCTGCCTGCAGAATGCAAGAGTCGA...CAGAGAGCAGTCAACTGCTCTGATTTCTGGGAAATAAAAACACCACGATGTACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098908.4
CDS-3UTR TCA 90 bp	TGTACATCGTGGTGTTTTTATTTCCCAGAAATCAGAGCAGTTGACTGCTCTCTGGACACACAAGGAGGATaGAGAGAAGAAATAACAGCC	+
Preference number: 4 (lower is better) Translates to: CTSWCFYFPEIRAVDCSLDTQGG*REEITA Trigger: GGCTGTTATTTCTTCTCTTCATCCTCCTTGTGTGTC...CAGAGAGCAGTCAACTGCTCTGATTTCTGGGAAATAAAAACACCACGATGTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098908.4
CDS-3UTR GCA 90 bp	TGTACATCGTGGTGTTTTTATTTCCCAGAAATCAGAGCAGTTGACTGCTCTCTGTCTGAGACTTGCAAATaGCACCCATTTTCTCACACG	+
Preference number: 4 (lower is better) Translates to: CTSWCFYFPEIRAVDCSLSETCK*HPFSHT Trigger: CGTGTGAGAAAATGGGTGGCATTTGCAAGTCTCAGA...CAGAGAGCAGTCAACTGCTCTGATTTCTGGGAAATAAAAACACCACGATGTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098908.4
CDS-3UTR CAA 90 bp	GCTGTACATCGTGGTGTTTTTATTTCCCAGAAATCAGAGCAGTTGACTGCTCTCCACACGGACGAAACTTaGAGTTTCTTTTGCGCCCTG	+
Preference number: 5 (lower is better) Translates to: AVHRGVFISQKSEQLTALHTDET*SFFCAL Trigger: CAGGGCGCAAAAGAAACTCAAAGTTTCGTCCGTGTG...GAGAGCAGTCAACTGCTCTGATTTCTGGGAAATAAAAACACCACGATGTACAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098908.4
CDS-3UTR CAA 90 bp	TGTACATCGTGGTGTTTTTATTTCCCAGAAATCAGAGCAGTTGACTGCTCTCTGTGTTTGTATCGACTCTaGCATTCTGCAGGCAGGATA	+
Preference number: 5 (lower is better) Translates to: CTSWCFYFPEIRAVDCSLCLYRL*HSAGRI Trigger: TATCCTGCCTGCAGAATGCAAGAGTCGATACAAACA...CAGAGAGCAGTCAACTGCTCTGATTTCTGGGAAATAAAAACACCACGATGTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098908.4
CDS GCA 72 bp	CAACCTACAGCAGTGTTTGTATCGACTCTTGCATTCTaGAGGCAGGATAGAGCATCCGTGAGTTTTCTGAGA	+
Preference number: 6 (lower is better) Translates to: QPTAVFVSTLAF*RQDRASVSFLR Trigger: TCTCAGAAAACTCACGGATGCTCTATCCTGCCTGCAGAATGCAAGAGTCGATACAAACACTGCTGTAGGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098908.4

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