RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DEFB30 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075571

Ensembl transcript IDs: ENSMUST00000100490.3, ENSMUST00000111207.8, ENSMUST00000111208.2, ENSMUST00000111209.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp GCTTCCAGTGTGTTCACCAGCCCTGTAGCACCACTCTaGGGACAAAGGACTCGAGAGGCGCAGGAGGCCCCA +
Preference number: 3 (lower is better)
Translates to: ASSVFTSPVAPL*GQRTREAQEAP
Trigger: TGGGGCCTCCTGCGCCTCTCGAGTCCTTTGTCCCCAGAGTGGTGCTACAGGGCTGGTGAACACACTGGAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111208.2
3UTR GCA 72 bp GTTTTAATAGGATGGATGGCACAACGGCTGCAAACTTaGTTCCAGTGTGTTCACCAGCCCTGTAGCACCACT +
Preference number: 3 (lower is better)
Translates to: VLIGWMAQRLQT*FQCVHQPCSTT
Trigger: AGTGGTGCTACAGGGCTGGTGAACACACTGGAAGCAAGTTTGCAGCCGTTGTGCCATCCATCCTATTAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111208.2
CDS-3UTR GCA 90 bp CCACTCTGGGGACAAAGGACTCGAGAGGCGCAGGAGGCCCCAGAATACTCACAGTTTGACATGTATTCCTaGAAATGCCTTTTAGTTTCC +
Preference number: 4 (lower is better)
Translates to: PLWGQRTREAQEAPEYSQFDMYS*KCLLVS
Trigger: GGAAACTAAAAGGCATTTGCAGGAATACATGTCAAA...CTGTGAGTATTCTGGGGCCTCCTGCGCCTCTCGAGTCCTTTGTCCCCAGAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111208.2
CDS-3UTR GCA 90 bp CATTGTTTTAATAGGATGGATGGCACAACGGCTGCAAACTTGCTTCCAGTGTGTATGTATTCCTGCAAATaGCTTTTAGTTTCCAGCATG +
Preference number: 4 (lower is better)
Translates to: HCFNRMDGTTAANLLPVCMYSCK*LLVSSM
Trigger: CATGCTGGAAACTAAAAGGCATTTGCAGGAATACAT...ACACACTGGAAGCAAGTTTGCAGCCGTTGTGCCATCCATCCTATTAAAACAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111208.2
CDS-3UTR CCA 90 bp TTTACTAACAACATAGAGAATGGAAATTGGTGCAAGCAATCTGAAAGACAGAGGCCCACTTCTAACTGGTaGAACATAGGAGAGCAAGAC +
Preference number: 4 (lower is better)
Translates to: FTNNIENGNWCKQSERQRPTSNW*NIGEQD
Trigger: GTCTTGCTCTCCTATGTTCCACCAGTTAGAAGTGGG...CCTCTGTCTTTCAGATTGCTTGCACCAATTTCCATTCTCTATGTTGTTAGTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111207.8
CDS-3UTR GCA 90 bp TTTACTAACAACATAGAGAATGGAAATTGGTGCAAGCAATCTGAAAGACAGAGGATGTATTCCTGCAAATaGCTTTTAGTTTCCAGCATG +
Preference number: 4 (lower is better)
Translates to: FTNNIENGNWCKQSERQRMYSCK*LLVSSM
Trigger: CATGCTGGAAACTAAAAGGCATTTGCAGGAATACAT...CCTCTGTCTTTCAGATTGCTTGCACCAATTTCCATTCTCTATGTTGTTAGTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111207.8
ENSMUST00000111209.2
CDS-3UTR GCA 90 bp TTTACTAACAACATAGAGAATGGAAATTGGTGCAAGCAATCTGAAAGACAGAGGTTTGACATGTATTCCTaGAAATGCCTTTTAGTTTCC +
Preference number: 4 (lower is better)
Translates to: FTNNIENGNWCKQSERQRFDMYS*KCLLVS
Trigger: GGAAACTAAAAGGCATTTGCAGGAATACATGTCAAA...CCTCTGTCTTTCAGATTGCTTGCACCAATTTCCATTCTCTATGTTGTTAGTAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111207.8
ENSMUST00000111209.2
CDS CCA 90 bp TGTGTCGTAAATCCGTTTTATGTACATATTCACCCCACTTCTAACTaGTGGAACATAGGAGAGCAAGACAAAGAGCACGAGGGTCAACTG +
Preference number: 5 (lower is better)
Translates to: CVVNPFYVHIHPTSN*WNIGEQDKEHEGQL
Trigger: CAGTTGACCCTCGTGCTCTTTGTCTTGCTCTCCTATGTTCCACCAGTTAGAAGTGGGGTGAATATGTACATAAAACGGATTTACGACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100490.3
ENSMUST00000111207.8
CDS CCA 72 bp CCGTTTTATGTACATATTCACCCCACTTCTAACTGGTaGAACATAGGAGAGCAAGACAAAGAGCACGAGGGT +
Preference number: 6 (lower is better)
Translates to: PFYVHIHPTSNW*NIGEQDKEHEG
Trigger: ACCCTCGTGCTCTTTGTCTTGCTCTCCTATGTTCCACCAGTTAGAAGTGGGGTGAATATGTACATAAAACGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100490.3
ENSMUST00000111207.8
CDS CCA 72 bp AATCCGTTTTATGTACATATTCACCCCACTTCTAACTaGTGGAACATAGGAGAGCAAGACAAAGAGCACGAG +
Preference number: 6 (lower is better)
Translates to: NPFYVHIHPTSN*WNIGEQDKEHE
Trigger: CTCGTGCTCTTTGTCTTGCTCTCCTATGTTCCACCAGTTAGAAGTGGGGTGAATATGTACATAAAACGGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100490.3
ENSMUST00000111207.8
CDS GCA 72 bp GATAAATTTCTTCTTTTTGACATGTATTCCTGCAAATaGCTTTTAGTTTCCAGCATGTGTCGTAAATCCGTT +
Preference number: 6 (lower is better)
Translates to: DKFLLFDMYSCK*LLVSSMCRKSV
Trigger: AACGGATTTACGACACATGCTGGAAACTAAAAGGCATTTGCAGGAATACATGTCAAAAAGAAGAAATTTATC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100490.3
ENSMUST00000111207.8
ENSMUST00000111208.2
ENSMUST00000111209.2