Pregenerated sensors for DEFB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039775Ensembl transcript IDs: ENSMUST00000033852.8
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AAGATTTGTCCATCTTCATGGAGGAGCAAATTCTGGTGTTTTCTTTGTTTAACGGCTAAAAGCTGCAGGTaGAGACAGCAGCACCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: KICPSSWRSKFWCFLCLTAKSCR*RQQHQE Trigger: CTCCTGGTGCTGCTGTCTCCACCTGCAGCTTTTAGC...CGTTAAACAAAGAAAACACCAGAATTTGCTCCTCCATGAAGATGGACAAATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033852.8 |
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| CDS-3UTR GCA 90 bp | AAGATTTGTCCATCTTCATGGAGGAGCAAATTCTGGTGTTTTCTTTGTTTAACGACCGATTCCAGCATCTaGCTCCTTTCCTCAAACAAC | + |
|
Preference number: 4 (lower is better) Translates to: KICPSSWRSKFWCFLCLTTDSSI*LLSSNN Trigger: GTTGTTTGAGGAAAGGAGGCAGATGCTGGAATCGGT...CGTTAAACAAAGAAAACACCAGAATTTGCTCCTCCATGAAGATGGACAAATCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033852.8 |
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| CDS-3UTR TCA 90 bp | AAGATTTGTCCATCTTCATGGAGGAGCAAATTCTGGTGTTTTCTTTGTTTAACGTTCTCTTGCAGCATTTaGGGAAAGGAACTCCACAAC | + |
|
Preference number: 4 (lower is better) Translates to: KICPSSWRSKFWCFLCLTFSCSI*GKELHN Trigger: GTTGTGGAGTTCCTTTCCTCAAATGCTGCAAGAGAA...CGTTAAACAAAGAAAACACCAGAATTTGCTCCTCCATGAAGATGGACAAATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033852.8 |
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| CDS-3UTR GCA 90 bp | AAGATTTGTCCATCTTCATGGAGGAGCAAATTCTGGTGTTTTCTTTGTTTAACGCAGCACCAGGAGAAATaGAAACAGAAGGTAATGGAT | + |
|
Preference number: 4 (lower is better) Translates to: KICPSSWRSKFWCFLCLTQHQEK*KQKVMD Trigger: ATCCATTACCTTCTGTTTGCATTTCTCCTGGTGCTG...CGTTAAACAAAGAAAACACCAGAATTTGCTCCTCCATGAAGATGGACAAATCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033852.8 |
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| CDS-3UTR CAA 90 bp | AAGATTTGTCCATCTTCATGGAGGAGCAAATTCTGGTGTTTTCTTTGTTTAACGTTTCTCTTGCAGCATTaGAGGAAAGGAACTCCACAA | + |
|
Preference number: 5 (lower is better) Translates to: KICPSSWRSKFWCFLCLTFLLQH*RKGTPQ Trigger: TTGTGGAGTTCCTTTCCTCAAATGCTGCAAGAGAAA...CGTTAAACAAAGAAAACACCAGAATTTGCTCCTCCATGAAGATGGACAAATCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033852.8 |
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