Pregenerated sensors for DEFB29 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044249

Ensembl transcript IDs: ENSMUST00000060598.4

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	GTGACATTCAAACCTGAGTGTAGCTTGAAGCATTTGTGGTGGGCAAGCCAGGCTCCTGCCTCTTGCTACTaGGGAATCCGAACAGGCCAC	+
Preference number: 4 (lower is better) Translates to: VTFKPECSLKHLWWASQAPASCY*GIRTGH Trigger: GTGGCCTGTTCGGATTCCGCAGTAGCAAGAGGCAGG...AGCCTGGCTTGCCCACCACAAATGCTTCAAGCTACACTCAGGTTTGAATGTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060598.4
CDS-3UTR GCA 90 bp	CCGGTGACATTCAAACCTGAGTGTAGCTTGAAGCATTTGTGGTGGGCAAGCCAGGCAATCCATGGCTCCTaGCTCTTGCTACTGCGGAAT	+
Preference number: 4 (lower is better) Translates to: PVTFKPECSLKHLWWASQAIHGS*LLLLRN Trigger: ATTCCGCAGTAGCAAGAGGCAGGAGCCATGGATTGC...CTGGCTTGCCCACCACAAATGCTTCAAGCTACACTCAGGTTTGAATGTCACCGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060598.4
CDS-3UTR GCA 90 bp	GGGATGATGCCGGTGACATTCAAACCTGAGTGTAGCTTGAAGCATTTGTGGTGGTCTGGCAGGCATTTCTaGATAACCCCTGGTAAAGCT	+
Preference number: 4 (lower is better) Translates to: GMMPVTFKPECSLKHLWWSGRHF*ITPGKA Trigger: AGCTTTACCAGGGGTTATGCAGAAATGCCTGCCAGA...CCACCACAAATGCTTCAAGCTACACTCAGGTTTGAATGTCACCGGCATCATCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060598.4
CDS-3UTR CCA 90 bp	ATGATGCCGGTGACATTCAAACCTGAGTGTAGCTTGAAGCATTTGTGGTGGGCAGGGCAACTTAAGTACTaGATCTCATATTTCTGGCAG	+
Preference number: 4 (lower is better) Translates to: MMPVTFKPECSLKHLWWAGQLKY*ISYFWQ Trigger: CTGCCAGAAATATGAGATCCAGTACTTAAGTTGCCC...TGCCCACCACAAATGCTTCAAGCTACACTCAGGTTTGAATGTCACCGGCATCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060598.4
CDS-3UTR CCA 90 bp	ATGATGCCGGTGACATTCAAACCTGAGTGTAGCTTGAAGCATTTGTGGTGGGCATGGATCTCATATTTCTaGCAGGCATTTCTGCATAAC	+
Preference number: 4 (lower is better) Translates to: MMPVTFKPECSLKHLWWAWISYF*QAFLHN Trigger: GTTATGCAGAAATGCCTGCCAGAAATATGAGATCCA...TGCCCACCACAAATGCTTCAAGCTACACTCAGGTTTGAATGTCACCGGCATCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060598.4
CDS GCA 90 bp	ATAACCCCTGGTAAAGCTCACACGCAATCCATGGCTCCTGCCTCTTaGTACTGCGGAATCCGAACAGGCCACCTGTGGTCTCGTCAACCA	+
Preference number: 5 (lower is better) Translates to: ITPGKAHTQSMAPAS*YCGIRTGHLWSRQP Trigger: TGGTTGACGAGACCACAGGTGGCCTGTTCGGATTCCGCAGTAGCAAGAGGCAGGAGCCATGGATTGCGTGTGAGCTTTACCAGGGGTTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060598.4
CDS GCA 90 bp	TTGGGCAACTTAAGTACTGGATCTCATATTTCTGGCAGGCATTTCTaGATAACCCCTGGTAAAGCTCACACGCAATCCATGGCTCCTGCC	+
Preference number: 5 (lower is better) Translates to: LGNLSTGSHISGRHF*ITPGKAHTQSMAPA Trigger: GGCAGGAGCCATGGATTGCGTGTGAGCTTTACCAGGGGTTATGCAGAAATGCCTGCCAGAAATATGAGATCCAGTACTTAAGTTGCCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060598.4
CDS-3UTR CAA 90 bp	ATGCCGGTGACATTCAAACCTGAGTGTAGCTTGAAGCATTTGTGGTGGGCAAGCAGCACTTCCTGGTCTTaGGGCAACTTAAGTACTGGA	+
Preference number: 5 (lower is better) Translates to: MPVTFKPECSLKHLWWASSTSWS*GNLSTG Trigger: TCCAGTACTTAAGTTGCCCAAAGACCAGGAAGTGCT...GCTTGCCCACCACAAATGCTTCAAGCTACACTCAGGTTTGAATGTCACCGGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060598.4
CDS CCA 72 bp	GCCTCTTGCTACTGCGGAATCCGAACAGGCCACCTGTaGTCTCGTCAACCAGGATCAGCACGACCACCACAG	+
Preference number: 6 (lower is better) Translates to: ASCYCGIRTGHL*SRQPGSARPPQ Trigger: CTGTGGTGGTCGTGCTGATCCTGGTTGACGAGACCACAGGTGGCCTGTTCGGATTCCGCAGTAGCAAGAGGC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060598.4