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Pregenerated sensors for DEFB28 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074679

Ensembl transcript IDs: ENSMUST00000121912.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAGTTTAATTTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATTaGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAATGCCTTGAGG +
Preference number: 1 (lower is better)
Translates to: KFNFSEFWGRSPKED*FSAGLSPWLANALR
Trigger: CCTCAAGGCATTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAAATTAAACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121912.2
3UTR-3UTR GCA 90 bp CAGAAGTTTAATTTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATTGGTTCCCTCTCTCCTTGGCTTaGCAATGCCTTGAGGCTTCT +
Preference number: 2 (lower is better)
Translates to: QKFNFSEFWGRSPKEDWFPLSLA*QCLEAS
Trigger: AGAAGCCTCAAGGCATTGGCAAGCCAAGGAGAGAGG...GAACCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAAATTAAACTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121912.2
3UTR CCA 72 bp TTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATTaGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAAT +
Preference number: 3 (lower is better)
Translates to: FSEFWGRSPKED*FSAGLSPWLAN
Trigger: ATTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121912.2
CDS-3UTR CCA 90 bp AGATTGGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAATGCCTTGAGGCTTCTTGTGTCCCGAGAGGGTaGAGGAGCGAGTCTGTAGCA +
Preference number: 4 (lower is better)
Translates to: RLVLRRPLSLACQCLEASCVPRG*RSESVA
Trigger: TGCTACAGACTCGCTCCTCCACCCTCTCGGGACACA...AGAAGCCTCAAGGCATTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAATCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121912.2
CDS-3UTR GCA 90 bp TTGGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAATGCCTTGAGGCTTCTCGGTCTTCTCATTGGCCCTaGATATGCGCCTGCATTTCC +
Preference number: 4 (lower is better)
Translates to: LVLRRPLSLACQCLEASRSSHWP*ICACIS
Trigger: GGAAATGCAGGCGCATATGCAGGGCCAATGAGAAGA...CCGAGAAGCCTCAAGGCATTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121912.2
3UTR CAA 72 bp TTTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATaGGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAA +
Preference number: 4 (lower is better)
Translates to: FLRILGTKSKGR*VLRRPLSLACQ
Trigger: TTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121912.2
CDS-3UTR TCA 90 bp CAACAGAAGTTTAATTTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATTGGCCCTCTGGGGATGTCTaGGCCAGGACCACAAGGACA +
Preference number: 4 (lower is better)
Translates to: QQKFNFSEFWGRSPKEDWPSGDV*ARTTRT
Trigger: TGTCCTTGTGGTCCTGGCTCAGACATCCCCAGAGGG...CCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAAATTAAACTTCTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121912.2
CDS-3UTR CCA 90 bp AGTTTAATTTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATTGGTTCTCCGTCTGAACCATCCCTCTaGGGATGTCTGAGCCAGGAC +
Preference number: 4 (lower is better)
Translates to: SLISQNSGDEVQRKIGSPSEPSL*GCLSQD
Trigger: GTCCTGGCTCAGACATCCCCAGAGGGATGGTTCAGA...CGGAGAACCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAAATTAAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121912.2
CDS-3UTR CAA 90 bp GAAGATTGGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAATGCCTTGAGGCTTTCTTTCTTCTTCTCATaGGCCCTGCATATGCGCCTG +
Preference number: 5 (lower is better)
Translates to: EDWFSAGLSPWLANALRLSFFFS*ALHMRL
Trigger: CAGGCGCATATGCAGGGCCAATGAGAAGAAGAAAGA...AAGCCTCAAGGCATTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAATCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121912.2
CDS CAA 72 bp ACCACAAGGACAGCTAAGGTCAGGAACCAGAGCTTATaGTGTCCCGAGAGGGTGGAGGAGCGAGTCTGTAGC +
Preference number: 6 (lower is better)
Translates to: TTRTAKVRNQSL*CPERVEERVCS
Trigger: GCTACAGACTCGCTCCTCCACCCTCTCGGGACACAATAAGCTCTGGTTCCTGACCTTAGCTGTCCTTGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121912.2
CDS GCA 72 bp CGCATCTCTCTTTCTTCTTCTCATTGGCCCTGCATATaGGCCTGCATTTCCCCAAGCCATAAAAGCAGGTTC +
Preference number: 6 (lower is better)
Translates to: RISLSSSHWPCI*ACISPSHKSRF
Trigger: GAACCTGCTTTTATGGCTTGGGGAAATGCAGGCGCATATGCAGGGCCAATGAGAAGAAGAAAGAGAGATGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121912.2