Pregenerated sensors for DEFB28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074679Ensembl transcript IDs: ENSMUST00000121912.2
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | AAGTTTAATTTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATTaGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAATGCCTTGAGG | + |
Preference number: 1 (lower is better) Translates to: KFNFSEFWGRSPKED*FSAGLSPWLANALR Trigger: CCTCAAGGCATTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAAATTAAACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121912.2 |
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3UTR-3UTR GCA 90 bp | CAGAAGTTTAATTTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATTGGTTCCCTCTCTCCTTGGCTTaGCAATGCCTTGAGGCTTCT | + |
Preference number: 2 (lower is better) Translates to: QKFNFSEFWGRSPKEDWFPLSLA*QCLEAS Trigger: AGAAGCCTCAAGGCATTGGCAAGCCAAGGAGAGAGG...GAACCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAAATTAAACTTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121912.2 |
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3UTR CCA 72 bp | TTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATTaGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAAT | + |
Preference number: 3 (lower is better) Translates to: FSEFWGRSPKED*FSAGLSPWLAN Trigger: ATTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121912.2 |
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CDS-3UTR CCA 90 bp | AGATTGGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAATGCCTTGAGGCTTCTTGTGTCCCGAGAGGGTaGAGGAGCGAGTCTGTAGCA | + |
Preference number: 4 (lower is better) Translates to: RLVLRRPLSLACQCLEASCVPRG*RSESVA Trigger: TGCTACAGACTCGCTCCTCCACCCTCTCGGGACACA...AGAAGCCTCAAGGCATTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAATCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121912.2 |
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CDS-3UTR GCA 90 bp | TTGGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAATGCCTTGAGGCTTCTCGGTCTTCTCATTGGCCCTaGATATGCGCCTGCATTTCC | + |
Preference number: 4 (lower is better) Translates to: LVLRRPLSLACQCLEASRSSHWP*ICACIS Trigger: GGAAATGCAGGCGCATATGCAGGGCCAATGAGAAGA...CCGAGAAGCCTCAAGGCATTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121912.2 |
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3UTR CAA 72 bp | TTTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATaGGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAA | + |
Preference number: 4 (lower is better) Translates to: FLRILGTKSKGR*VLRRPLSLACQ Trigger: TTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121912.2 |
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CDS-3UTR TCA 90 bp | CAACAGAAGTTTAATTTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATTGGCCCTCTGGGGATGTCTaGGCCAGGACCACAAGGACA | + |
Preference number: 4 (lower is better) Translates to: QQKFNFSEFWGRSPKEDWPSGDV*ARTTRT Trigger: TGTCCTTGTGGTCCTGGCTCAGACATCCCCAGAGGG...CCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAAATTAAACTTCTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121912.2 |
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CDS-3UTR CCA 90 bp | AGTTTAATTTCTCAGAATTCTGGGGACGAAGTCCAAAGGAAGATTGGTTCTCCGTCTGAACCATCCCTCTaGGGATGTCTGAGCCAGGAC | + |
Preference number: 4 (lower is better) Translates to: SLISQNSGDEVQRKIGSPSEPSL*GCLSQD Trigger: GTCCTGGCTCAGACATCCCCAGAGGGATGGTTCAGA...CGGAGAACCAATCTTCCTTTGGACTTCGTCCCCAGAATTCTGAGAAATTAAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121912.2 |
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CDS-3UTR CAA 90 bp | GAAGATTGGTTCTCCGCAGGCCTCTCTCCTTGGCTTGCCAATGCCTTGAGGCTTTCTTTCTTCTTCTCATaGGCCCTGCATATGCGCCTG | + |
Preference number: 5 (lower is better) Translates to: EDWFSAGLSPWLANALRLSFFFS*ALHMRL Trigger: CAGGCGCATATGCAGGGCCAATGAGAAGAAGAAAGA...AAGCCTCAAGGCATTGGCAAGCCAAGGAGAGAGGCCTGCGGAGAACCAATCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121912.2 |
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CDS CAA 72 bp | ACCACAAGGACAGCTAAGGTCAGGAACCAGAGCTTATaGTGTCCCGAGAGGGTGGAGGAGCGAGTCTGTAGC | + |
Preference number: 6 (lower is better) Translates to: TTRTAKVRNQSL*CPERVEERVCS Trigger: GCTACAGACTCGCTCCTCCACCCTCTCGGGACACAATAAGCTCTGGTTCCTGACCTTAGCTGTCCTTGTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121912.2 |
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CDS GCA 72 bp | CGCATCTCTCTTTCTTCTTCTCATTGGCCCTGCATATaGGCCTGCATTTCCCCAAGCCATAAAAGCAGGTTC | + |
Preference number: 6 (lower is better) Translates to: RISLSSSHWPCI*ACISPSHKSRF Trigger: GAACCTGCTTTTATGGCTTGGGGAAATGCAGGCGCATATGCAGGGCCAATGAGAAGAAGAAAGAGAGATGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121912.2 |