RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DEFB26 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074680

Ensembl transcript IDs: ENSMUST00000099205.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp ACCTGCAGGATTGACGGTAGTTCCTGTGGGCATCTTGCCAATACCTaGAGGATTGACAGTAGTTCCTGTGGGTGTCTTGCCAATACCTGC +
Preference number: 5 (lower is better)
Translates to: TCRIDGSSCGHLANT*RIDSSSCGCLANTC
Trigger: GCAGGTATTGGCAAGACACCCACAGGAACTACTGTCAATCCTGCAGGTATTGGCAAGATGCCCACAGGAACTACCGTCAATCCTGCAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS GCA 90 bp TGGGAGGTCCTGAGGGTAGTTTGTCTTCTGATAGAGTTCGGTGAATaGAGCATGATACTTTGTTCTTACACAGATATATGTACCGTTCCT +
Preference number: 5 (lower is better)
Translates to: WEVLRVVCLLIEFGE*SMILCSYTDICTVP
Trigger: AGGAACGGTACATATATCTGTGTAAGAACAAAGTATCATGCTGCATTCACCGAACTCTATCAGAAGACAAACTACCCTCAGGACCTCCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS TCA 90 bp CATGATACTTTGTTCTTACACAGATATATGTACCGTTCCTCTTCTTaGCATCGGACTCTGCAGTACCCTAAACTATTCTTCCAGCATTTT +
Preference number: 5 (lower is better)
Translates to: HDTLFLHRYMYRSSS*HRTLQYPKLFFQHF
Trigger: AAAATGCTGGAAGAATAGTTTAGGGTACTGCAGAGTCCGATGTCAAGAAGAGGAACGGTACATATATCTGTGTAAGAACAAAGTATCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS GCA 72 bp ATTGACGGTAGTTCCTGTGGGTGTCTTGCCAATACCTaGAGGATTGACGGTAGTTCCTGTGGGCATCTTGCC +
Preference number: 6 (lower is better)
Translates to: IDGSSCGCLANT*RIDGSSCGHLA
Trigger: GGCAAGATGCCCACAGGAACTACCGTCAATCCTGCAGGTATTGGCAAGACACCCACAGGAACTACCGTCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS CAA 72 bp GTGGTGGTTGTGGGTGTCTTGCCAATACCAGCAGGATaGACGGTAGTTCCTGTGGGTGTCTTGCCAATACCT +
Preference number: 6 (lower is better)
Translates to: VVVVGVLPIPAG*TVVPVGVLPIP
Trigger: AGGTATTGGCAAGACACCCACAGGAACTACCGTCAATCCTGCTGGTATTGGCAAGACACCCACAACCACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS CAA 90 bp GGATTGACGGTAGTTCCTGTGGGCATCTTGCCAATACCTGCAGGATaGACAGTAGTTCCTGTGGGTGTCTTGCCAATACCTGCAGGATTG +
Preference number: 6 (lower is better)
Translates to: GLTVVPVGILPIPAG*TVVPVGVLPIPAGL
Trigger: CAATCCTGCAGGTATTGGCAAGACACCCACAGGAACTACTGTCAATCCTGCAGGTATTGGCAAGATGCCCACAGGAACTACCGTCAATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS CAA 90 bp GTCTTGCCAATACCTGCAGGATTGACGGTAGTTCCTGTGGGCATCTaGCCAATACCTGCAGGATTGACAGTAGTTCCTGTGGGTGTCTTG +
Preference number: 6 (lower is better)
Translates to: VLPIPAGLTVVPVGI*PIPAGLTVVPVGVL
Trigger: CAAGACACCCACAGGAACTACTGTCAATCCTGCAGGTATTGGCAAGATGCCCACAGGAACTACCGTCAATCCTGCAGGTATTGGCAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS TCA 72 bp TTTGGTATGGGTCTCCTCCAGGCAGCTTTGTTCCCCTaGGTTAGCAACCCATGGACAATGAAGGCCAGTGTT +
Preference number: 6 (lower is better)
Translates to: FGMGLLQAALFP*VSNPWTMKASV
Trigger: AACACTGGCCTTCATTGTCCATGGGTTGCTAACTCAGGGGAACAAAGCTGCCTGGAGGAGACCCATACCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS GCA 72 bp ATTGACGGTAGTTCCTGTGGGCATCTTGCCAATACCTaGAGGATTGACAGTAGTTCCTGTGGGTGTCTTGCC +
Preference number: 6 (lower is better)
Translates to: IDGSSCGHLANT*RIDSSSCGCLA
Trigger: GGCAAGACACCCACAGGAACTACTGTCAATCCTGCAGGTATTGGCAAGATGCCCACAGGAACTACCGTCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS CAA 72 bp ATACCAGCAGGATTGACGGTAGTTCCTGTGGGTGTCTaGCCAATACCTGCAGGATTGACGGTAGTTCCTGTG +
Preference number: 6 (lower is better)
Translates to: IPAGLTVVPVGV*PIPAGLTVVPV
Trigger: CACAGGAACTACCGTCAATCCTGCAGGTATTGGCAAGACACCCACAGGAACTACCGTCAATCCTGCTGGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS CAA 72 bp GTAGTTCCTGTGGGCATCTTGCCAATACCTGCAGGATaGACAGTAGTTCCTGTGGGTGTCTTGCCAATACCT +
Preference number: 6 (lower is better)
Translates to: VVPVGILPIPAG*TVVPVGVLPIP
Trigger: AGGTATTGGCAAGACACCCACAGGAACTACTGTCAATCCTGCAGGTATTGGCAAGATGCCCACAGGAACTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS CCA 72 bp TGCAGTACCCTAAACTATTCTTCCAGCATTTTGGTATaGGTCTCCTCCAGGCAGCTTTGTTCCCCTGAGTTA +
Preference number: 6 (lower is better)
Translates to: CSTLNYSSSILV*VSSRQLCSPEL
Trigger: TAACTCAGGGGAACAAAGCTGCCTGGAGGAGACCCATACCAAAATGCTGGAAGAATAGTTTAGGGTACTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS CAA 72 bp ATACCTGCAGGATTGACAGTAGTTCCTGTGGGTGTCTaGCCAATACCTGCAGGATTGACGATAGTTCCTATG +
Preference number: 6 (lower is better)
Translates to: IPAGLTVVPVGV*PIPAGLTIVPM
Trigger: CATAGGAACTATCGTCAATCCTGCAGGTATTGGCAAGACACCCACAGGAACTACTGTCAATCCTGCAGGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS CAA 90 bp ATCTTGCCAATACCTGCAGGATTGACAGTAGTTCCTGTGGGTGTCTaGCCAATACCTGCAGGATTGACGATAGTTCCTATGGGTGTTTTA +
Preference number: 6 (lower is better)
Translates to: ILPIPAGLTVVPVGV*PIPAGLTIVPMGVL
Trigger: TAAAACACCCATAGGAACTATCGTCAATCCTGCAGGTATTGGCAAGACACCCACAGGAACTACTGTCAATCCTGCAGGTATTGGCAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS GCA 72 bp ATTGACAGTAGTTCCTGTGGGTGTCTTGCCAATACCTaGAGGATTGACGATAGTTCCTATGGGTGTTTTAGA +
Preference number: 6 (lower is better)
Translates to: IDSSSCGCLANT*RIDDSSYGCFR
Trigger: TCTAAAACACCCATAGGAACTATCGTCAATCCTGCAGGTATTGGCAAGACACCCACAGGAACTACTGTCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS CAA 72 bp GTAGTTCCTGTGGGTGTCTTGCCAATACCTGCAGGATaGACGATAGTTCCTATGGGTGTTTTAGAGTCATTT +
Preference number: 6 (lower is better)
Translates to: VVPVGVLPIPAG*TIVPMGVLESF
Trigger: AAATGACTCTAAAACACCCATAGGAACTATCGTCAATCCTGCAGGTATTGGCAAGACACCCACAGGAACTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2
CDS GCA 72 bp CTGAGGGTAGTTTGTCTTCTGATAGAGTTCGGTGAATaGAGCATGATACTTTGTTCTTACACAGATATATGT +
Preference number: 6 (lower is better)
Translates to: LRVVCLLIEFGE*SMILCSYTDIC
Trigger: ACATATATCTGTGTAAGAACAAAGTATCATGCTGCATTCACCGAACTCTATCAGAAGACAAACTACCCTCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099205.2