Pregenerated sensors for DEFB20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049560Ensembl transcript IDs: ENSMUST00000109836.3
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCAGACAAGGAGCGGATACAGGCAAAAGGGTCGAACTTTATTGTGTaGAGACTCAAGTTCACAGAAGGAAAGAGACAGGACAGAAGCAGC | + |
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Preference number: 1 (lower is better) Translates to: PDKERIQAKGSNFIV*RLKFTEGKRQDRSS Trigger: GCTGCTTCTGTCCTGTCTCTTTCCTTCTGTGAACTTGAGTCTGCACACAATAAAGTTCGACCCTTTTGCCTGTATCCGCTCCTTGTCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| 3UTR GCA 90 bp | TTGAATGAAGAGAACTACTTGAGATCTGTGAAATACCATCTTGGCTaGAAAGTGGAGAGACTTGCTGACACCTCCCCCAGCATTCACTTA | + |
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Preference number: 1 (lower is better) Translates to: LNEENYLRSVKYHLG*KVERLADTSPSIHL Trigger: TAAGTGAATGCTGGGGGAGGTGTCAGCAAGTCTCTCCACTTTGCAGCCAAGATGGTATTTCACAGATCTCAAGTAGTTCTCTTCATTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| 3UTR-3UTR CCA 90 bp | ACCATCTTGGCTGCAAAGTGGAGAGACTTGCTGACACCTCCCCCAGCATTCACTGCCCACTGGATTCCATaGGGCTGCAGGGGACAACGG | + |
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Preference number: 2 (lower is better) Translates to: TILAAKWRDLLTPPPAFTAHWIP*GCRGQR Trigger: CCGTTGTCCCCTGCAGCCCCATGGAATCCAGTGGGC...AGTGAATGCTGGGGGAGGTGTCAGCAAGTCTCTCCACTTTGCAGCCAAGATGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| 3UTR CAA 90 bp | AATATCCAGACAAGGAGCGGATACAGGCAAAAGGGTCGAACTTTATaGTGTGCAGACTCAAGTTCACAGAAGGAAAGAGACAGGACAGAA | + |
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Preference number: 2 (lower is better) Translates to: NIQTRSGYRQKGRTL*CADSSSQKERDRTE Trigger: TTCTGTCCTGTCTCTTTCCTTCTGTGAACTTGAGTCTGCACACAATAAAGTTCGACCCTTTTGCCTGTATCCGCTCCTTGTCTGGATATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR GCA 90 bp | GACAGAAGCAGCCCACTGGATTCCATGGGGCTGCAGGGGACAACGGCCTTCGTGACTGAGTGCTTCTTGTaGTTTTTGTTCTCCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: DRSSPLDSMGLQGTTAFVTECFL*FLFSSS Trigger: TGAGCTGGAGAACAAAAAGCACAAGAAGCACTCAGT...CACGAAGGCCGTTGTCCCCTGCAGCCCCATGGAATCCAGTGGGCTGCTTCTGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR TCA 90 bp | CAAGGAGCGGATACAGGCAAAAGGGTCGAACTTTATTGTGTGCAGACTCAAGTTACTTGTCTTGGAGTTTaGCTGTCTCCTCAACGACTG | + |
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Preference number: 4 (lower is better) Translates to: QGADTGKRVELYCVQTQVTCLGV*LSPQRL Trigger: CAGTCGTTGAGGAGACAGTCAAACTCCAAGACAAGT...AACTTGAGTCTGCACACAATAAAGTTCGACCCTTTTGCCTGTATCCGCTCCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR TCA 90 bp | ACCATCTTGGCTGCAAAGTGGAGAGACTTGCTGACACCTCCCCCAGCATTCACTATAGTCTTGTACTTTTaGCTTGTCTTGGAGTTTGAC | + |
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Preference number: 4 (lower is better) Translates to: TILAAKWRDLLTPPPAFTIVLYF*LVLEFD Trigger: GTCAAACTCCAAGACAAGTCAAAAGTACAAGACTAT...AGTGAATGCTGGGGGAGGTGTCAGCAAGTCTCTCCACTTTGCAGCCAAGATGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR GCA 90 bp | CAAGGAGCGGATACAGGCAAAAGGGTCGAACTTTATTGTGTGCAGACTCAAGTTCAACAGTATTTCCCATaGAGGCATCCCATCTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: QGADTGKRVELYCVQTQVQQYFP*RHPISD Trigger: ATCTGAGATGGGATGCCTGCATGGGAAATACTGTTG...AACTTGAGTCTGCACACAATAAAGTTCGACCCTTTTGCCTGTATCCGCTCCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| 3UTR CAA 72 bp | ACAAGGAGCGGATACAGGCAAAAGGGTCGAACTTTATaGTGTGCAGACTCAAGTTCACAGAAGGAAAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: TRSGYRQKGRTL*CADSSSQKERD Trigger: GTCTCTTTCCTTCTGTGAACTTGAGTCTGCACACAATAAAGTTCGACCCTTTTGCCTGTATCCGCTCCTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR GCA 90 bp | CAGCAGCTAACCATTCACATTTATAATATCCAGACAAGGAGCGGATACAGGCAATGCACCATCTGCAAGTaGCACAAACAGCAAAACAAG | + |
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Preference number: 4 (lower is better) Translates to: QQLTIHIYNIQTRSGYRQCTICK*HKQQNK Trigger: CTTGTTTTGCTGTTTGTGGCACTTGCAGATGGTGCA...TTGCCTGTATCCGCTCCTTGTCTGGATATTATAAATGTGAATGGTTAGCTGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR CCA 90 bp | TCTCTGTGTCCCCATTTCACAGGTGAAACGCAAGCAATACAGCAGCTAACCATTACTTTTGACTTGTCTTaGAGTTTGACTGTCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: SLCPHFTGETQAIQQLTITFDLS*SLTVSS Trigger: TGAGGAGACAGTCAAACTCCAAGACAAGTCAAAAGT...AATGGTTAGCTGCTGTATTGCTTGCGTTTCACCTGTGAAATGGGGACACAGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR GCA 90 bp | AGAGAACTACTTGAGATCTGTGAAATACCATCTTGGCTGCAAAGTGGAGAGACTTCCTCAACGACTGAGTaGTTCTTGTGCTTTTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: RELLEICEIPSWLQSGETSSTTE*FLCFLF Trigger: GAACAAAAAGCACAAGAAGCACTCAGTCGTTGAGGA...AGTCTCTCCACTTTGCAGCCAAGATGGTATTTCACAGATCTCAAGTAGTTCTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR GCA 90 bp | CAGCAGCTAACCATTCACATTTATAATATCCAGACAAGGAGCGGATACAGGCAAATATCTCCACTAATCTaGATTTCTTCCTACAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: QQLTIHIYNIQTRSGYRQISPLI*ISSYSS Trigger: GCTACTGTAGGAAGAAATGCAGATTAGTGGAGATAT...TTGCCTGTATCCGCTCCTTGTCTGGATATTATAAATGTGAATGGTTAGCTGCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR CAA 90 bp | AGATCTGTGAAATACCATCTTGGCTGCAAAGTGGAGAGACTTGCTGACACCTCCTCTTGTACTTTTGACTaGTCTTGGAGTTTGACTGTC | + |
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Preference number: 5 (lower is better) Translates to: RSVKYHLGCKVERLADTSSCTFD*SWSLTV Trigger: GACAGTCAAACTCCAAGACAAGTCAAAAGTACAAGA...GGAGGTGTCAGCAAGTCTCTCCACTTTGCAGCCAAGATGGTATTTCACAGATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS GCA 90 bp | TTGTCTTGGAGTTTGACTGTCTCCTCAACGACTGAGTGCTTCTTGTaGTTTTTGTTCTCCAGCTCATTAACACAACAGTATTTCCCATGC | + |
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Preference number: 5 (lower is better) Translates to: LSWSLTVSSTTECFL*FLFSSSLTQQYFPC Trigger: GCATGGGAAATACTGTTGTGTTAATGAGCTGGAGAACAAAAAGCACAAGAAGCACTCAGTCGTTGAGGAGACAGTCAAACTCCAAGACAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR CAA 90 bp | AGAGAACTACTTGAGATCTGTGAAATACCATCTTGGCTGCAAAGTGGAGAGACTTTGCTAAAACATCTTTaGGGCTGTGCACCATCTGCA | + |
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Preference number: 5 (lower is better) Translates to: RELLEICEIPSWLQSGETLLKHL*GCAPSA Trigger: TGCAGATGGTGCACAGCCCAAAAGATGTTTTAGCAA...AGTCTCTCCACTTTGCAGCCAAGATGGTATTTCACAGATCTCAAGTAGTTCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR CAA 90 bp | CAAGCAATACAGCAGCTAACCATTCACATTTATAATATCCAGACAAGGAGCGGAACGACTGAGTGCTTCTaGTGCTTTTTGTTCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: QAIQQLTIHIYNIQTRSGTTECF*CFLFSS Trigger: GCTGGAGAACAAAAAGCACAAGAAGCACTCAGTCGT...TCCGCTCCTTGTCTGGATATTATAAATGTGAATGGTTAGCTGCTGTATTGCTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS-3UTR CAA 90 bp | CAAGCAATACAGCAGCTAACCATTCACATTTATAATATCCAGACAAGGAGCGGAGACTTGTCTTGGAGTTaGACTGTCTCCTCAACGACT | + |
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Preference number: 5 (lower is better) Translates to: QAIQQLTIHIYNIQTRSGDLSWS*TVSSTT Trigger: AGTCGTTGAGGAGACAGTCAAACTCCAAGACAAGTC...TCCGCTCCTTGTCTGGATATTATAAATGTGAATGGTTAGCTGCTGTATTGCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS GCA 90 bp | TTGTGCTTTTTGTTCTCCAGCTCATTAACACAACAGTATTTCCCATaGAGGCATCCCATCTCAGATATCTCCACTAATCTGCATTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: LCFLFSSSLTQQYFP*RHPISDISTNLHFF Trigger: GAAGAAATGCAGATTAGTGGAGATATCTGAGATGGGATGCCTGCATGGGAAATACTGTTGTGTTAATGAGCTGGAGAACAAAAAGCACAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS CAA 90 bp | TGGAGTTTGACTGTCTCCTCAACGACTGAGTGCTTCTTGTGCTTTTaGTTCTCCAGCTCATTAACACAACAGTATTTCCCATGCAGGCAT | + |
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Preference number: 6 (lower is better) Translates to: WSLTVSSTTECFLCF*FSSSLTQQYFPCRH Trigger: ATGCCTGCATGGGAAATACTGTTGTGTTAATGAGCTGGAGAACAAAAAGCACAAGAAGCACTCAGTCGTTGAGGAGACAGTCAAACTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS GCA 72 bp | TTGTTCTCCAGCTCATTAACACAACAGTATTTCCCATaGAGGCATCCCATCTCAGATATCTCCACTAATCTG | + |
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Preference number: 6 (lower is better) Translates to: LFSSSLTQQYFP*RHPISDISTNL Trigger: CAGATTAGTGGAGATATCTGAGATGGGATGCCTGCATGGGAAATACTGTTGTGTTAATGAGCTGGAGAACAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS TCA 72 bp | TCATATAGTCTTGTACTTTTGACTTGTCTTGGAGTTTaGCTGTCTCCTCAACGACTGAGTGCTTCTTGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SYSLVLLTCLGV*LSPQRLSASCA Trigger: AGCACAAGAAGCACTCAGTCGTTGAGGAGACAGTCAAACTCCAAGACAAGTCAAAAGTACAAGACTATATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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| CDS GCA 72 bp | AGTTTGACTGTCTCCTCAACGACTGAGTGCTTCTTGTaGTTTTTGTTCTCCAGCTCATTAACACAACAGTAT | + |
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Preference number: 6 (lower is better) Translates to: SLTVSSTTECFL*FLFSSSLTQQY Trigger: ATACTGTTGTGTTAATGAGCTGGAGAACAAAAAGCACAAGAAGCACTCAGTCGTTGAGGAGACAGTCAAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109836.3 |
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