Pregenerated sensors for DEFB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006570

Ensembl transcript IDs: ENSMUST00000006745.4

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GGAAACAGCTCCCAGGACGCCTGGCAGAAGGAGGACAAATGGCTCTaGCACAGTACCCTCCATTGGTGTGGCAGTGGTCAAGTTCTGCTT	+
Preference number: 5 (lower is better) Translates to: GNSSQDAWQKEDKWL*HSTLHWCGSGQVLL Trigger: AAGCAGAACTTGACCACTGCCACACCAATGGAGGGTACTGTGTCAGAGCCATTTGTCCTCCTTCTGCCAGGCGTCCTGGGAGCTGTTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006745.4
CDS CCA 90 bp	GGAGGACAAATGGCTCTGACACAGTACCCTCCATTGGTGTGGCAGTaGTCAAGTTCTGCTTCGTATCCAATACTTTTTAAACTTCCAACA	+
Preference number: 5 (lower is better) Translates to: GGQMALTQYPPLVWQ*SSSASYPILFKLPT Trigger: TGTTGGAAGTTTAAAAAGTATTGGATACGAAGCAGAACTTGACCACTGCCACACCAATGGAGGGTACTGTGTCAGAGCCATTTGTCCTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006745.4
CDS CCA 90 bp	GCAGAAGGAGGACAAATGGCTCTGACACAGTACCCTCCATTGGTGTaGCAGTGGTCAAGTTCTGCTTCGTATCCAATACTTTTTAAACTT	+
Preference number: 5 (lower is better) Translates to: AEGGQMALTQYPPLV*QWSSSASYPILFKL Trigger: AAGTTTAAAAAGTATTGGATACGAAGCAGAACTTGACCACTGCCACACCAATGGAGGGTACTGTGTCAGAGCCATTTGTCCTCCTTCTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006745.4
CDS TCA 72 bp	TCCCAGGACGCCTGGCAGAAGGAGGACAAATGGCTCTaGCACAGTACCCTCCATTGGTGTGGCAGTGGTCAA	+
Preference number: 6 (lower is better) Translates to: SQDAWQKEDKWL*HSTLHWCGSGQ Trigger: TTGACCACTGCCACACCAATGGAGGGTACTGTGTCAGAGCCATTTGTCCTCCTTCTGCCAGGCGTCCTGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006745.4
CDS CAA 72 bp	GAAGGAGGACAAATGGCTCTGACACAGTACCCTCCATaGGTGTGGCAGTGGTCAAGTTCTGCTTCGTATCCA	+
Preference number: 6 (lower is better) Translates to: EGGQMALTQYPP*VWQWSSSASYP Trigger: TGGATACGAAGCAGAACTTGACCACTGCCACACCAATGGAGGGTACTGTGTCAGAGCCATTTGTCCTCCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006745.4
CDS CAA 90 bp	CGCCTGGCAGAAGGAGGACAAATGGCTCTGACACAGTACCCTCCATaGGTGTGGCAGTGGTCAAGTTCTGCTTCGTATCCAATACTTTTT	+
Preference number: 6 (lower is better) Translates to: RLAEGGQMALTQYPP*VWQWSSSASYPILF Trigger: AAAAAGTATTGGATACGAAGCAGAACTTGACCACTGCCACACCAATGGAGGGTACTGTGTCAGAGCCATTTGTCCTCCTTCTGCCAGGCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006745.4
CDS CCA 72 bp	GGACAAATGGCTCTGACACAGTACCCTCCATTGGTGTaGCAGTGGTCAAGTTCTGCTTCGTATCCAATACTT	+
Preference number: 6 (lower is better) Translates to: GQMALTQYPPLV*QWSSSASYPIL Trigger: AAGTATTGGATACGAAGCAGAACTTGACCACTGCCACACCAATGGAGGGTACTGTGTCAGAGCCATTTGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006745.4
CDS CCA 72 bp	ATGGCTCTGACACAGTACCCTCCATTGGTGTGGCAGTaGTCAAGTTCTGCTTCGTATCCAATACTTTTTAAA	+
Preference number: 6 (lower is better) Translates to: MALTQYPPLVWQ*SSSASYPILFK Trigger: TTTAAAAAGTATTGGATACGAAGCAGAACTTGACCACTGCCACACCAATGGAGGGTACTGTGTCAGAGCCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006745.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu