Pregenerated sensors for DEFB19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050645Ensembl transcript IDs: ENSMUST00000053180.4
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AAGGGGGCAGACAGCAGGGACGGCTTCCCTGGAAGTCTGTACACGGTGTGCAGGCCTGTTCACTCTTTTTaGAGGAAGACCTACAGAATC | + |
|
Preference number: 4 (lower is better) Translates to: KGADSRDGFPGSLYTVCRPVHSF*RKTYRI Trigger: GATTCTGTAGGTCTTCCTGCAAAAAGAGTGAACAGG...CCTGCACACCGTGTACAGACTTCCAGGGAAGCCGTCCCTGCTGTCTGCCCCCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053180.4 |
||
| CDS-3UTR GCA 90 bp | TTAATAAGGGGGCAGACAGCAGGGACGGCTTCCCTGGAAGTCTGTACACGGTGTACATCTGGAAAGTTCTaGAGTAGAAGTAGGCCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: LIRGQTAGTASLEVCTRCTSGKF*SRSRPV Trigger: AACAGGCCTACTTCTACTGCAGAACTTTCCAGATGT...ACACCGTGTACAGACTTCCAGGGAAGCCGTCCCTGCTGTCTGCCCCCTTATTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053180.4 |
||
| CDS-3UTR CAA 90 bp | AAGGGGGCAGACAGCAGGGACGGCTTCCCTGGAAGTCTGTACACGGTGTGCAGGGCCTGTTCACTCTTTTaGCAGGAAGACCTACAGAAT | + |
|
Preference number: 5 (lower is better) Translates to: KGADSRDGFPGSLYTVCRACSLF*QEDLQN Trigger: ATTCTGTAGGTCTTCCTGCAAAAAGAGTGAACAGGC...CCTGCACACCGTGTACAGACTTCCAGGGAAGCCGTCCCTGCTGTCTGCCCCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053180.4 |
||
| CDS-3UTR CAA 90 bp | AATAAGGGGGCAGACAGCAGGGACGGCTTCCCTGGAAGTCTGTACACGGTGTGCTCTGTTACCCATGCATaGAAGGATAGGATTTTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: NKGADSRDGFPGSLYTVCSVTHA*KDRIFA Trigger: GGCAAAAATCCTATCCTTCAATGCATGGGTAACAGA...GCACACCGTGTACAGACTTCCAGGGAAGCCGTCCCTGCTGTCTGCCCCCTTATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053180.4 |
||
| CDS TCA 90 bp | CTCTTTTTGCAGGAAGACCTACAGAATCCTCTGTTACCCATGCATTaGAGGATAGGATTTTTGCCAGACACGACCAGTTCCGTTGCCACA | + |
|
Preference number: 5 (lower is better) Translates to: LFLQEDLQNPLLPMH*RIGFLPDTTSSVAT Trigger: TGTGGCAACGGAACTGGTCGTGTCTGGCAAAAATCCTATCCTTCAATGCATGGGTAACAGAGGATTCTGTAGGTCTTCCTGCAAAAAGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053180.4 |
||
| CDS GCA 90 bp | ACATCTGGAAAGTTCTGCAGTAGAAGTAGGCCTGTTCACTCTTTTTaGAGGAAGACCTACAGAATCCTCTGTTACCCATGCATTGAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: TSGKFCSRSRPVHSF*RKTYRILCYPCIEG Trigger: TCCTTCAATGCATGGGTAACAGAGGATTCTGTAGGTCTTCCTGCAAAAAGAGTGAACAGGCCTACTTCTACTGCAGAACTTTCCAGATGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053180.4 |
||
| CDS GCA 72 bp | AAGGATAGGATTTTTGCCAGACACGACCAGTTCCGTTaGCACAAGTATGGCAAGAAGCAGGAGAGCCAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: KDRIFARHDQFR*HKYGKKQESQP Trigger: AGGCTGGCTCTCCTGCTTCTTGCCATACTTGTGGCAACGGAACTGGTCGTGTCTGGCAAAAATCCTATCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053180.4 |
||
| CDS CAA 90 bp | ACTCTTTTTGCAGGAAGACCTACAGAATCCTCTGTTACCCATGCATaGAAGGATAGGATTTTTGCCAGACACGACCAGTTCCGTTGCCAC | + |
|
Preference number: 6 (lower is better) Translates to: TLFAGRPTESSVTHA*KDRIFARHDQFRCH Trigger: GTGGCAACGGAACTGGTCGTGTCTGGCAAAAATCCTATCCTTCAATGCATGGGTAACAGAGGATTCTGTAGGTCTTCCTGCAAAAAGAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053180.4 |
||
| CDS TCA 72 bp | CAGGAAGACCTACAGAATCCTCTGTTACCCATGCATTaGAGGATAGGATTTTTGCCAGACACGACCAGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: QEDLQNPLLPMH*RIGFLPDTTSS Trigger: GGAACTGGTCGTGTCTGGCAAAAATCCTATCCTTCAATGCATGGGTAACAGAGGATTCTGTAGGTCTTCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053180.4 |
||
| CDS CAA 72 bp | GCAGGAAGACCTACAGAATCCTCTGTTACCCATGCATaGAAGGATAGGATTTTTGCCAGACACGACCAGTTC | + |
|
Preference number: 6 (lower is better) Translates to: AGRPTESSVTHA*KDRIFARHDQF Trigger: GAACTGGTCGTGTCTGGCAAAAATCCTATCCTTCAATGCATGGGTAACAGAGGATTCTGTAGGTCTTCCTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053180.4 |
||