Pregenerated sensors for DEFB18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073735

Ensembl transcript IDs: ENSMUST00000097818.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGACTTGCATGTACCACGGACCAGGGAACATTTGTGTGTTCTTTCTaGAACCTCTCTTGTTTTCATCTGAGGAGCAGAAGGACCACAGGA	+
Preference number: 5 (lower is better) Translates to: RLACTTDQGTFVCSF*NLSCFHLRSRRTTG Trigger: TCCTGTGGTCCTTCTGCTCCTCAGATGAAAACAAGAGAGGTTGCAGAAAGAACACACAAATGTTCCCTGGTCCGTGGTACATGCAAGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097818.2
CDS TCA 90 bp	AGGGAACATTTGTGTGTTCTTTCTGCAACCTCTCTTGTTTTCATCTaGGGAGCAGAAGGACCACAGGACACAGAGAAGATAACCATCAGG	+
Preference number: 5 (lower is better) Translates to: REHLCVLSATSLVFI*GAEGPQDTEKITIR Trigger: CCTGATGGTTATCTTCTCTGTGTCCTGTGGTCCTTCTGCTCCTCAGATGAAAACAAGAGAGGTTGCAGAAAGAACACACAAATGTTCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097818.2
CDS CAA 90 bp	TACCACGGACCAGGGAACATTTGTGTGTTCTTTCTGCAACCTCTCTaGTTTTCATCTGAGGAGCAGAAGGACCACAGGACACAGAGAAGA	+
Preference number: 6 (lower is better) Translates to: YHGPGNICVFFLQPL*FSSEEQKDHRTQRR Trigger: TCTTCTCTGTGTCCTGTGGTCCTTCTGCTCCTCAGATGAAAACAAGAGAGGTTGCAGAAAGAACACACAAATGTTCCCTGGTCCGTGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097818.2
CDS TCA 72 bp	TTGTGTGTTCTTTCTGCAACCTCTCTTGTTTTCATCTaGGGAGCAGAAGGACCACAGGACACAGAGAAGATA	+
Preference number: 6 (lower is better) Translates to: LCVLSATSLVFI*GAEGPQDTEKI Trigger: TATCTTCTCTGTGTCCTGTGGTCCTTCTGCTCCTCAGATGAAAACAAGAGAGGTTGCAGAAAGAACACACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097818.2
CDS CAA 72 bp	CATTCAGACTTGCATGTACCACGGACCAGGGAACATTaGTGTGTTCTTTCTGCAACCTCTCTTGTTTTCATC	+
Preference number: 6 (lower is better) Translates to: HSDLHVPRTREH*CVLSATSLVFI Trigger: GATGAAAACAAGAGAGGTTGCAGAAAGAACACACAAATGTTCCCTGGTCCGTGGTACATGCAAGTCTGAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097818.2

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