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Pregenerated sensors for DEFB13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044222

Ensembl transcript IDs: ENSMUST00000060587.4

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGAAGGTCAGACCCAGGGAGGTCATTTTCCACTATACTAGACACTaGATAGACCTGACTTCCCAAAGCCCAAAACTGGAGAAGAGGCCA +
Preference number: 1 (lower is better)
Translates to: QKVRPREVIFHYTRH*IDLTSQSPKLEKRP
Trigger: TGGCCTCTTCTCCAGTTTTGGGCTTTGGGAAGTCAGGTCTATTCAGTGTCTAGTATAGTGGAAAATGACCTCCCTGGGTCTGACCTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
3UTR-3UTR GCA 90 bp GTGTCAGCCCCACAGAAGGTCAGACCCAGGGAGGTCATTTTCCACTATACTAGATTTCTTCTGAGATTCTaGTCACGGCTGGTGCTGAGA +
Preference number: 2 (lower is better)
Translates to: VSAPQKVRPREVIFHYTRFLLRF*SRLVLR
Trigger: TCTCAGCACCAGCCGTGAGCAGAATCTCAGAAGAAA...TCTAGTATAGTGGAAAATGACCTCCCTGGGTCTGACCTTCTGTGGGGCTGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
3UTR TCA 72 bp AGACCCAGGGAGGTCATTTTCCACTATACTAGACACTaGATAGACCTGACTTCCCAAAGCCCAAAACTGGAG +
Preference number: 3 (lower is better)
Translates to: RPREVIFHYTRH*IDLTSQSPKLE
Trigger: CTCCAGTTTTGGGCTTTGGGAAGTCAGGTCTATTCAGTGTCTAGTATAGTGGAAAATGACCTCCCTGGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS-3UTR CCA 90 bp CAGGACATAGTGTCAGCCCCACAGAAGGTCAGACCCAGGGAGGTCATTTTCCACCAATGTGCCCCAGGCTaGGTAAAGTTGAATGAGAAG +
Preference number: 4 (lower is better)
Translates to: QDIVSAPQKVRPREVIFHQCAPG*VKLNEK
Trigger: CTTCTCATTCAACTTTACCCAGCCTGGGGCACATTG...GTGGAAAATGACCTCCCTGGGTCTGACCTTCTGTGGGGCTGACACTATGTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS-3UTR GCA 90 bp CAGCCCCACAGAAGGTCAGACCCAGGGAGGTCATTTTCCACTATACTAGACACTACCTTCTGTACAATGTaGCCCAGGCTGGGTAAAGTT +
Preference number: 4 (lower is better)
Translates to: QPHRRSDPGRSFSTILDTTFCTM*PRLGKV
Trigger: AACTTTACCCAGCCTGGGGCACATTGTACAGAAGGT...AGTGTCTAGTATAGTGGAAAATGACCTCCCTGGGTCTGACCTTCTGTGGGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS-3UTR TCA 90 bp ACACTGAATAGACCTGACTTCCCAAAGCCCAAAACTGGAGAAGAGGCCAGTGAGCTGGGTAAAGTTGAATaGGAAGAACAAGCCCAGCAA +
Preference number: 4 (lower is better)
Translates to: TLNRPDFPKPKTGEEASELGKVE*EEQAQQ
Trigger: TTGCTGGGCTTGTTCTTCTCATTCAACTTTACCCAG...CTCACTGGCCTCTTCTCCAGTTTTGGGCTTTGGGAAGTCAGGTCTATTCAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS-3UTR CCA 90 bp AATAGACCTGACTTCCCAAAGCCCAAAACTGGAGAAGAGGCCAGTGAGGGACAGCACTCAGCTTCACATTaGCCATTCATCTTTTTACAG +
Preference number: 4 (lower is better)
Translates to: NRPDFPKPKTGEEASEGQHSASH*PFIFLQ
Trigger: CTGTAAAAAGATGAATGGCCAATGTGAAGCTGAGTG...CTGTCCCTCACTGGCCTCTTCTCCAGTTTTGGGCTTTGGGAAGTCAGGTCTATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS-3UTR CAA 90 bp AAGAGGCCAGTGAGGGACAGTCCCGAGAAGTTTCTTCTGAGATTCTGCTCACGGCTGCAGCACAGGAAATaGGCTTGGCAGGTCCCAATC +
Preference number: 5 (lower is better)
Translates to: KRPVRDSPEKFLLRFCSRLQHRK*AWQVPI
Trigger: GATTGGGACCTGCCAAGCCAATTTCCTGTGCTGCAG...CCGTGAGCAGAATCTCAGAAGAAACTTCTCGGGACTGTCCCTCACTGGCCTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS-3UTR CAA 90 bp GAGGGACAGTCCCGAGAAGTTTCTTCTGAGATTCTGCTCACGGCTGGTGCTGAGCCAGGCTGGGTAAAGTaGAATGAGAAGAACAAGCCC +
Preference number: 5 (lower is better)
Translates to: EGQSREVSSEILLTAGAEPGWVK*NEKNKP
Trigger: GGGCTTGTTCTTCTCATTCAACTTTACCCAGCCTGG...CTCAGCACCAGCCGTGAGCAGAATCTCAGAAGAAACTTCTCGGGACTGTCCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS-3UTR CAA 90 bp CCAGTGAGGGACAGTCCCGAGAAGTTTCTTCTGAGATTCTGCTCACGGCTGGTGGCACAGGAAATTGGCTaGGCAGGTCCCAATCTTTTG +
Preference number: 5 (lower is better)
Translates to: PVRDSPEKFLLRFCSRLVAQEIG*AGPNLL
Trigger: CAAAAGATTGGGACCTGCCAAGCCAATTTCCTGTGC...CACCAGCCGTGAGCAGAATCTCAGAAGAAACTTCTCGGGACTGTCCCTCACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS GCA 90 bp CTTTTCCTGCAGCACAGGAAATTGGCTTGGCAGGTCCCAATCTTTTaGTCGAAGGTAAAGCACTCAGCTTCACATTGGCCATTCATCTTT +
Preference number: 5 (lower is better)
Translates to: LFLQHRKLAWQVPIF*SKVKHSASHWPFIF
Trigger: AAAGATGAATGGCCAATGTGAAGCTGAGTGCTTTACCTTCGAGCAAAAGATTGGGACCTGCCAAGCCAATTTCCTGTGCTGCAGGAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS GCA 72 bp CAGCACAGGAAATTGGCTTGGCAGGTCCCAATCTTTTaGTCGAAGGTAAAGCACTCAGCTTCACATTGGCCA +
Preference number: 6 (lower is better)
Translates to: QHRKLAWQVPIF*SKVKHSASHWP
Trigger: TGGCCAATGTGAAGCTGAGTGCTTTACCTTCGAGCAAAAGATTGGGACCTGCCAAGCCAATTTCCTGTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS CCA 72 bp TTTACAGAGGAACCTTCTGTACAATGTGCCCCAGGCTaGGTAAAGTTGAATGAGAAGAACAAGCCCAGCAAC +
Preference number: 6 (lower is better)
Translates to: FTEEPSVQCAPG*VKLNEKNKPSN
Trigger: GTTGCTGGGCTTGTTCTTCTCATTCAACTTTACCCAGCCTGGGGCACATTGTACAGAAGGTTCCTCTGTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS CCA 72 bp ATCTTTTGCTCGAAGGTAAAGCACTCAGCTTCACATTaGCCATTCATCTTTTTACAGAGGAACCTTCTGTAC +
Preference number: 6 (lower is better)
Translates to: IFCSKVKHSASH*PFIFLQRNLLY
Trigger: GTACAGAAGGTTCCTCTGTAAAAAGATGAATGGCCAATGTGAAGCTGAGTGCTTTACCTTCGAGCAAAAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4
CDS CAA 72 bp AATCTTTTGCTCGAAGGTAAAGCACTCAGCTTCACATaGGCCATTCATCTTTTTACAGAGGAACCTTCTGTA +
Preference number: 6 (lower is better)
Translates to: NLLLEGKALSFT*AIHLFTEEPSV
Trigger: TACAGAAGGTTCCTCTGTAAAAAGATGAATGGCCAATGTGAAGCTGAGTGCTTTACCTTCGAGCAAAAGATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060587.4