Pregenerated sensors for DEFB12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043787

Ensembl transcript IDs: ENSMUST00000062113.8, ENSMUST00000062113.9

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	CAGAAAGAGGTAGTGATGCCCACACTGTCCCTTGTCTCCCAGGTTTaGTGTACTACAGACGACAATACAAATAAAATACCTGTATCAAAT	+
Preference number: 1 (lower is better) Translates to: QKEVVMPTLSLVSQV*CTTDDNTNKIPVSN Trigger: ATTTGATACAGGTATTTTATTTGTATTGTCGTCTGTAGTACAGCAAACCTGGGAGACAAGGGACAGTGTGGGCATCACTACCTCTTTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062113.8
3UTR-3UTR TCA 90 bp	CCCAGGTTTGCTGTACTACAGACGACAATACAAATAAAATACCTGTATCAAATAAGAGACAGACTGAGGTaGGACGGGCCTGAGCAGCGC	+
Preference number: 2 (lower is better) Translates to: PRFAVLQTTIQIKYLYQIRDRLR*DGPEQR Trigger: GCGCTGCTCAGGCCCGTCTCACCTCAGTCTGTCTCT...TATTTGATACAGGTATTTTATTTGTATTGTCGTCTGTAGTACAGCAAACCTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062113.8
3UTR-3UTR GCA 90 bp	TATGTTAGAGACACAGAAAGAGGTAGTGATGCCCACACTGTCCCTTGTCTCCCATTGTGCAGTTGTGTCTaGTTGTGTAGAAGGCATTCA	+
Preference number: 2 (lower is better) Translates to: YVRDTERGSDAHTVPCLPLCSCV*LCRRHS Trigger: TGAATGCCTTCTACACAAGCAGACACAACTGCACAA...TGGGAGACAAGGGACAGTGTGGGCATCACTACCTCTTTCTGTGTCTCTAACATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062113.8
3UTR-3UTR GCA 90 bp	CTGTCCCTTGTCTCCCAGGTTTGCTGTACTACAGACGACAATACAAATAAAATAGTAGAAGGCATTCATTaGTGTTTTGATTTTGGTCGT	+
Preference number: 2 (lower is better) Translates to: LSLVSQVCCTTDDNTNKIVEGIH*CFDFGR Trigger: ACGACCAAAATCAAAACAGCAATGAATGCCTTCTAC...TATTTTATTTGTATTGTCGTCTGTAGTACAGCAAACCTGGGAGACAAGGGACAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062113.8
3UTR-3UTR CAA 90 bp	GAAAGAGGTAGTGATGCCCACACTGTCCCTTGTCTCCCAGGTTTGCTGTACTACATGAGTGTTCTGGAGTaGTGCAGTTGTGTCTGCTTG	+
Preference number: 3 (lower is better) Translates to: ERGSDAHTVPCLPGLLYYMSVLE*CSCVCL Trigger: CAAGCAGACACAACTGCACAACTCCAGAACACTCAT...GTAGTACAGCAAACCTGGGAGACAAGGGACAGTGTGGGCATCACTACCTCTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062113.8
3UTR-3UTR CAA 90 bp	GGTGACCCTGAGCCCTATGAGACAATTCTGGAAAGAACAGTTATAAGTTATGAGACAGATGTTCTCTCCTaGACCATCCATTCAGCACGA	+
Preference number: 3 (lower is better) Translates to: GDPEPYETILERTVISYETDVLS*TIHSAR Trigger: TCGTGCTGAATGGATGGTCAAGGAGAGAACATCTGT...CTCATAACTTATAACTGTTCTTTCCAGAATTGTCTCATAGGGCTCAGGGTCACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062113.8
3UTR-3UTR CAA 90 bp	CCCAGGTTTGCTGTACTACAGACGACAATACAAATAAAATACCTGTATCAAATATGCAGTTGTGTCTGCTaGTGTAGAAGGCATTCATTG	+
Preference number: 3 (lower is better) Translates to: PRFAVLQTTIQIKYLYQICSCVC*CRRHSL Trigger: CAATGAATGCCTTCTACACAAGCAGACACAACTGCA...TATTTGATACAGGTATTTTATTTGTATTGTCGTCTGTAGTACAGCAAACCTGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062113.8
3UTR CAA 72 bp	CTGATTGTGGCCTGGGAAGCCACAGATGTTCTCTCCTaGACCATCCATTCAGCACGACTTGCAAGGTCCAAA	+
Preference number: 4 (lower is better) Translates to: LIVAWEATDVLS*TIHSARLARSK Trigger: TTTGGACCTTGCAAGTCGTGCTGAATGGATGGTCAAGGAGAGAACATCTGTGGCTTCCCAGGCCACAATCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062113.8
CDS GCA 72 bp	TCAGCTTGCACCAGCCCGCAATCTTCTCACTCTCTATaGATGTTCTCCTGCATTTTCCCCGGCCGAGCCTGC	+
Preference number: 6 (lower is better) Translates to: SACTSPQSSHSL*MFSCIFPGRAC Trigger: GCAGGCTCGGCCGGGGAAAATGCAGGAGAACATGCATAGAGAGTGAGAAGATTGCGGGCTGGTGCAAGCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062113.9
CDS GCA 72 bp	AGCCCGCAATCTTCTCACTCTCTATGCATGTTCTCCTaGATTTTCCCCGGCCGAGCCTGCATGTCTCGCACA	+
Preference number: 6 (lower is better) Translates to: SPQSSHSLCMFS*IFPGRACMSRT Trigger: TGTGCGAGACATGCAGGCTCGGCCGGGGAAAATGCAGGAGAACATGCATAGAGAGTGAGAAGATTGCGGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062113.9

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