Pregenerated sensors for DEFB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044748Ensembl transcript IDs: ENSMUST00000051017.9
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATATCCCAGGAAGCCTGTGTACCGTGTTCTCTGTTCCATTCCGTGTaGCCTTCTTGTGCTGGATGCATCTTGCATGGTGATAAAATTACA | + |
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Preference number: 1 (lower is better) Translates to: ISQEACVPCSLFHSV*PSCAGCILHGDKIT Trigger: TGTAATTTTATCACCATGCAAGATGCATCCAGCACAAGAAGGTCACACGGAATGGAACAGAGAACACGGTACACAGGCTTCCTGGGATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| 3UTR-3UTR CCA 90 bp | TGCGCTCTGGTTGGACAACTTACAGTTATAAAGGAGTTTCTATTGCTAAGGTTGACCAGGCAGATGTTCTaGATTTTCTCACCTCTTGTT | + |
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Preference number: 2 (lower is better) Translates to: CALVGQLTVIKEFLLLRLTRQMF*IFSPLV Trigger: AACAAGAGGTGAGAAAATCCAGAACATCTGCCTGGT...CAACCTTAGCAATAGAAACTCCTTTATAACTGTAAGTTGTCCAACCAGAGCGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| 3UTR-3UTR GCA 90 bp | GATGTCCAAGTCCCAACACAGATTTGTGATACACAATTATATTTGAAAGTTGTGATTACCCATGGAGGATaGGCTCTGGTTGGACAACTT | + |
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Preference number: 2 (lower is better) Translates to: DVQVPTQICDTQLYLKVVITHGG*ALVGQL Trigger: AAGTTGTCCAACCAGAGCGCATCCTCCATGGGTAAT...CACAACTTTCAAATATAATTGTGTATCACAAATCTGTGTTGGGACTTGGACATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| 3UTR-3UTR GCA 90 bp | GTCATAGAACTGACTGCTAAGACTGTGGAAGAGTCATTCTCTTTTATATCCCAGGTGCTGGATGCATCTTaGATGGTGATAAAATTACAT | + |
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Preference number: 2 (lower is better) Translates to: VIELTAKTVEESFSFISQVLDAS*MVIKLH Trigger: ATGTAATTTTATCACCATGCAAGATGCATCCAGCAC...CTGGGATATAAAAGAGAATGACTCTTCCACAGTCTTAGCAGTCAGTTCTATGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| 3UTR-3UTR TCA 90 bp | GATGTCCAAGTCCCAACACAGATTTGTGATACACAATTATATTTGAAAGTTGTGATATCACTCAAATTGTaGCCATCATTACTCAGGACC | + |
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Preference number: 2 (lower is better) Translates to: DVQVPTQICDTQLYLKVVISLKL*PSLLRT Trigger: GGTCCTGAGTAATGATGGTCACAATTTGAGTGATAT...CACAACTTTCAAATATAATTGTGTATCACAAATCTGTGTTGGGACTTGGACATC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| 3UTR GCA 72 bp | AAAGTACCAGGAAATCCAGACATTACCCATGGAGGATaGGCTCTGGTTGGACAACTTACAGTTATAAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: KVPGNPDITHGG*ALVGQLTVIKE Trigger: CTCCTTTATAACTGTAAGTTGTCCAACCAGAGCGCATCCTCCATGGGTAATGTCTGGATTTCCTGGTACTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| 3UTR-3UTR CAA 90 bp | GAAGAGTCATTCTCTTTTATATCCCAGGAAGCCTGTGTACCGTGTTCTCTGTTCTGTGCTGGATGCATCTaGCATGGTGATAAAATTACA | + |
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Preference number: 3 (lower is better) Translates to: EESFSFISQEACVPCSLFCAGCI*HGDKIT Trigger: TGTAATTTTATCACCATGCAAGATGCATCCAGCACA...GAACAGAGAACACGGTACACAGGCTTCCTGGGATATAAAAGAGAATGACTCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| 3UTR CCA 72 bp | AAATCCAGACATTACCCATGGAGGATGCGCTCTGGTTaGACAACTTACAGTTATAAAGGAGTTTCTATTGCT | + |
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Preference number: 3 (lower is better) Translates to: KSRHYPWRMRSG*TTYSYKGVSIA Trigger: AGCAATAGAAACTCCTTTATAACTGTAAGTTGTCCAACCAGAGCGCATCCTCCATGGGTAATGTCTGGATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| 3UTR-3UTR CAA 90 bp | GATGTCCAAGTCCCAACACAGATTTGTGATACACAATTATATTTGAAAGTTGTGTTCCGTGTGACCTTCTaGTGCTGGATGCATCTTGCA | + |
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Preference number: 3 (lower is better) Translates to: DVQVPTQICDTQLYLKVVFRVTF*CWMHLA Trigger: TGCAAGATGCATCCAGCACAAGAAGGTCACACGGAA...CACAACTTTCAAATATAATTGTGTATCACAAATCTGTGTTGGGACTTGGACATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| CDS-3UTR CCA 90 bp | TTAAAAGTACCAGGAAATCCAGACATTACCCATGGAGGATGCGCTCTGGTTGGAAGCTCTTACAACAGTTaGGCTTATCTGGTTTACAGG | + |
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Preference number: 4 (lower is better) Translates to: LKVPGNPDITHGGCALVGSSYNS*AYLVYR Trigger: CCTGTAAACCAGATAAGCCCAACTGTTGTAAGAGCT...TCCAACCAGAGCGCATCCTCCATGGGTAATGTCTGGATTTCCTGGTACTTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| CDS-3UTR CAA 90 bp | TTAAAAGTACCAGGAAATCCAGACATTACCCATGGAGGATGCGCTCTGGTTGGACAGGTTCCCTGTAGTTaGGTATTAGATGGGCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: LKVPGNPDITHGGCALVGQVPCS*VLDGQL Trigger: CAGCTGCCCATCTAATACCAAACTACAGGGAACCTG...TCCAACCAGAGCGCATCCTCCATGGGTAATGTCTGGATTTCCTGGTACTTTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| CDS-3UTR CAA 90 bp | TATCCCAGGAAGCCTGTGTACCGTGTTCTCTGTTCCATTCCGTGTGACCTTCTTACAGAATCCTCCATGTaGAAGGCATTTGTATTGATC | + |
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Preference number: 5 (lower is better) Translates to: YPRKPVYRVLCSIPCDLLTESSM*KAFVLI Trigger: GATCAATACAAATGCCTTCAACATGGAGGATTCTGT...AAGAAGGTCACACGGAATGGAACAGAGAACACGGTACACAGGCTTCCTGGGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| CDS-3UTR CAA 90 bp | TTAAAAGTACCAGGAAATCCAGACATTACCCATGGAGGATGCGCTCTGGTTGGACAGCTCTTACAACAGTaGGGCTTATCTGGTTTACAG | + |
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Preference number: 5 (lower is better) Translates to: LKVPGNPDITHGGCALVGQLLQQ*GLSGLQ Trigger: CTGTAAACCAGATAAGCCCAACTGTTGTAAGAGCTG...TCCAACCAGAGCGCATCCTCCATGGGTAATGTCTGGATTTCCTGGTACTTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| CDS-3UTR CAA 90 bp | TTAAAAGTACCAGGAAATCCAGACATTACCCATGGAGGATGCGCTCTGGTTGGATTGAAGGCATTTGTATaGATCTGTTCTTCGTCCAAG | + |
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Preference number: 5 (lower is better) Translates to: LKVPGNPDITHGGCALVGLKAFV*ICSSSK Trigger: CTTGGACGAAGAACAGATCAATACAAATGCCTTCAA...TCCAACCAGAGCGCATCCTCCATGGGTAATGTCTGGATTTCCTGGTACTTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| CDS TCA 90 bp | CATGTTGAAGGCATTTGTATTGATCTGTTCTTCGTCCAAGACTTGTaGGAATGCCAACACCTGGCTCCATCTGGGAGAAAAGAAAACATA | + |
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Preference number: 5 (lower is better) Translates to: HVEGICIDLFFVQDL*ECQHLAPSGRKENI Trigger: TATGTTTTCTTTTCTCCCAGATGGAGCCAGGTGTTGGCATTCTCACAAGTCTTGGACGAAGAACAGATCAATACAAATGCCTTCAACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| CDS CAA 72 bp | AGATGGGCAGCTGGAGCGGAGACAGAATCCTCCATGTaGAAGGCATTTGTATTGATCTGTTCTTCGTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: RWAAGAETESSM*KAFVLICSSSK Trigger: CTTGGACGAAGAACAGATCAATACAAATGCCTTCAACATGGAGGATTCTGTCTCCGCTCCAGCTGCCCATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| CDS TCA 72 bp | GGCATTTGTATTGATCTGTTCTTCGTCCAAGACTTGTaGGAATGCCAACACCTGGCTCCATCTGGGAGAAAA | + |
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Preference number: 6 (lower is better) Translates to: GICIDLFFVQDL*ECQHLAPSGRK Trigger: TTTTCTCCCAGATGGAGCCAGGTGTTGGCATTCTCACAAGTCTTGGACGAAGAACAGATCAATACAAATGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| CDS CCA 72 bp | CCAAGACTTGTGAGAATGCCAACACCTGGCTCCATCTaGGAGAAAAGAAAACATATCATCACCAGGAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: PRLVRMPTPGSI*EKRKHIITRRK Trigger: CTTTCTCCTGGTGATGATATGTTTTCTTTTCTCCCAGATGGAGCCAGGTGTTGGCATTCTCACAAGTCTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| CDS CAA 72 bp | GCGGAGACAGAATCCTCCATGTTGAAGGCATTTGTATaGATCTGTTCTTCGTCCAAGACTTGTGAGAATGCC | + |
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Preference number: 6 (lower is better) Translates to: AETESSMLKAFV*ICSSSKTCENA Trigger: GGCATTCTCACAAGTCTTGGACGAAGAACAGATCAATACAAATGCCTTCAACATGGAGGATTCTGTCTCCGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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| CDS CCA 72 bp | TGTTCTTCGTCCAAGACTTGTGAGAATGCCAACACCTaGCTCCATCTGGGAGAAAAGAAAACATATCATCAC | + |
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Preference number: 6 (lower is better) Translates to: CSSSKTCENANT*LHLGEKKTYHH Trigger: GTGATGATATGTTTTCTTTTCTCCCAGATGGAGCCAGGTGTTGGCATTCTCACAAGTCTTGGACGAAGAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051017.9 |
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