Pregenerated sensors for DEFA43 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079113

Ensembl transcript IDs: ENSMUST00000110749.4

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	TTCAGCAAGGAGTTTATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAAAGAGTCCCCTGGCTGCTCCTaGGTTTTAGTCTCTTCATCT	+
Preference number: 4 (lower is better) Translates to: FSKEFMREGIAIEAKHKESPGCS*VLVSSS Trigger: AGATGAAGAGACTAAAACTCAGGAGCAGCCAGGGGA...CTCTTTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCATAAACTCCTTGCTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110749.4
CDS GCA 90 bp	ACGGAAATCTTCTTTGGGCTACATCTTGAAGAGCAGAGCCTTCTGTaGCTCCAAAGGAGACAGAAACAGCCTGGTCCTCTTCCCCTGGCT	+
Preference number: 5 (lower is better) Translates to: TEIFFGLHLEEQSLL*LQRRQKQPGPLPLA Trigger: AGCCAGGGGAAGAGGACCAGGCTGTTTCTGTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAAGATGTAGCCCAAAGAAGATTTCCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110749.4
CDS CCA 72 bp	GGGCACTGGGGGCATGTCGGGCACACAGGGCACTTCTaGCACACTTCGCACTTCTGGCACACTCGGCACTTC	+
Preference number: 6 (lower is better) Translates to: GHWGHVGHTGHF*HTSHFWHTRHF Trigger: GAAGTGCCGAGTGTGCCAGAAGTGCGAAGTGTGCCAGAAGTGCCCTGTGTGCCCGACATGCCCCCAGTGCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110749.4
CDS CCA 72 bp	GGGCACACAGGGCACTTCTGGCACACTTCGCACTTCTaGCACACTCGGCACTTCCGGCACCACGGAAATCTT	+
Preference number: 6 (lower is better) Translates to: GHTGHFWHTSHF*HTRHFRHHGNL Trigger: AAGATTTCCGTGGTGCCGGAAGTGCCGAGTGTGCCAGAAGTGCGAAGTGTGCCAGAAGTGCCCTGTGTGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110749.4
CDS CCA 72 bp	TTTTGCCTTTCTTTGCACAATGGCTGCTTTGGGCACTaGGGGCATGTCGGGCACACAGGGCACTTCTGGCAC	+
Preference number: 6 (lower is better) Translates to: FCLSLHNGCFGH*GHVGHTGHFWH Trigger: GTGCCAGAAGTGCCCTGTGTGCCCGACATGCCCCCAGTGCCCAAAGCAGCCATTGTGCAAAGAAAGGCAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110749.4
CDS CAA 90 bp	CACTCGGCACTTCCGGCACCACGGAAATCTTCTTTGGGCTACATCTaGAAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGACAGAAACAGC	+
Preference number: 6 (lower is better) Translates to: HSALPAPRKSSLGYI*KSRAFCASKGDRNS Trigger: GCTGTTTCTGTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAAGATGTAGCCCAAAGAAGATTTCCGTGGTGCCGGAAGTGCCGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110749.4
CDS GCA 72 bp	TTCTTTGGGCTACATCTTGAAGAGCAGAGCCTTCTGTaGCTCCAAAGGAGACAGAAACAGCCTGGTCCTCTT	+
Preference number: 6 (lower is better) Translates to: FFGLHLEEQSLL*LQRRQKQPGPL Trigger: AAGAGGACCAGGCTGTTTCTGTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAAGATGTAGCCCAAAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110749.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu