Pregenerated sensors for DEFA42 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079114Ensembl transcript IDs: ENSMUST00000110752.4
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GAGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGGCACAATGGCTGCTTTaGGCACTGGGGGCATGTCGG | + |
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Preference number: 4 (lower is better) Translates to: EIVETKGKWSSQPRFHIQAQWLL*ALGACR Trigger: CCGACATGCCCCCAGTGCCCAAAGCAGCCATTGTGC...CTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR CCA 90 bp | GAGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGGAGACAGAAACAGCCTaGTCCTCTTCCCCTGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: EIVETKGKWSSQPRFHIQETETA*SSSPGC Trigger: GCAGCCAGGGGAAGAGGACCAGGCTGTTTCTGTCTC...CTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR CCA 90 bp | AGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGCTGGATAGGATCAGCCTaGACCTGTAAGGCCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: RSWRPKANGHLNPDSTFSWIGSA*TCKASR Trigger: CCTGCTGGCCTTACAGGTCCAGGCTGATCCTATCCA...GCTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR CCA 90 bp | GAGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGCACACAGGGCACTTCTaGCACACTTCGCACTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: EIVETKGKWSSQPRFHIQHTGHF*HTSHFW Trigger: CCAGAAGTGCGAAGTGTGCCAGAAGTGCCCTGTGTG...CTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR GCA 90 bp | AGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGCTCTTTGCACAATGGCTaGTTTGGGCACTGGGGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: RSWRPKANGHLNPDSTFSSLHNG*FGHWGH Trigger: ATGCCCCCAGTGCCCAAAGCAGCCATTGTGCAAAGA...GCTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR CCA 90 bp | GAGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGCTGGTCCTCTTCCCCTaGCTGCTCCTGAGTTTTAGT | + |
|
Preference number: 4 (lower is better) Translates to: EIVETKGKWSSQPRFHIQLVLFP*LLLSFS Trigger: ACTAAAACTCAGGAGCAGCCAGGGGAAGAGGACCAG...CTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR CCA 90 bp | AGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGCCCTTTCTTTGCACAATaGCTGCTTTGGGCACTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: RSWRPKANGHLNPDSTFSPFFAQ*LLWALG Trigger: CCCCAGTGCCCAAAGCAGCCATTGTGCAAAGAAAGG...GCTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR GCA 90 bp | AGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGCTATTTTGCCTTTCTTTaGACAATGGCTGCTTTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: RSWRPKANGHLNPDSTFSYFAFL*TMAALG Trigger: GCCCAAAGCAGCCATTGTGCAAAGAAAGGCAAAATA...GCTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR CCA 90 bp | AGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGCTTTATGATGTGTATTTaGAGCTTGGGTGGTGATAGC | + |
|
Preference number: 4 (lower is better) Translates to: RSWRPKANGHLNPDSTFSFMMCI*SLGGDS Trigger: GCTATCACCACCCAAGCTCCAAATACACATCATAAA...GCTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS CCA 90 bp | GGCTGCTTTGGGCACTGGGGGCATGTCGGGCACACAGGGCACTTCTaGCACACTTCGCACTTCTGGCACACTCGGCACTTCCGGCACCAC | + |
|
Preference number: 5 (lower is better) Translates to: GCFGHWGHVGHTGHF*HTSHFWHTRHFRHH Trigger: GTGGTGCCGGAAGTGCCGAGTGTGCCAGAAGTGCGAAGTGTGCCAGAAGTGCCCTGTGTGCCCGACATGCCCCCAGTGCCCAAAGCAGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS CCA 90 bp | GGGCATGTCGGGCACACAGGGCACTTCTGGCACACTTCGCACTTCTaGCACACTCGGCACTTCCGGCACCACGGAAATCTTCTTTGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: GHVGHTGHFWHTSHF*HTRHFRHHGNLLWA Trigger: AGCCCAAAGAAGATTTCCGTGGTGCCGGAAGTGCCGAGTGTGCCAGAAGTGCGAAGTGTGCCAGAAGTGCCCTGTGTGCCCGACATGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR CAA 90 bp | GAGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGCTCTTCATCTGTGTTTaGGATAGGATCAGCCTGGAC | + |
|
Preference number: 5 (lower is better) Translates to: EIVETKGKWSSQPRFHIQLFICV*DRISLD Trigger: GTCCAGGCTGATCCTATCCAAAACACAGATGAAGAG...CTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR CAA 90 bp | AGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGCTCTTTGGGCTACATCTaGAAGAGCAGAGCCTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: RSWRPKANGHLNPDSTFSSLGYI*KSRAFC Trigger: ACAGAAGGCTCTGCTCTTCAAGATGTAGCCCAAAGA...GCTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR CAA 90 bp | GAGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGCCACGGAAATCTTCTTaGGGCTACATCTTGAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: EIVETKGKWSSQPRFHIQPRKSS*GYILKS Trigger: GCTCTTCAAGATGTAGCCCAAAGAAGATTTCCGTGG...CTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR CAA 90 bp | GAGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGTTATTTTGCCTTTCTTaGCACAATGGCTGCTTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: EIVETKGKWSSQPRFHIQLFCLS*HNGCFG Trigger: CCCAAAGCAGCCATTGTGCAAAGAAAGGCAAAATAA...CTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS-3UTR CAA 90 bp | GAGATCGTGGAGACCAAAGGCAAATGGTCATCTCAACCCAGATTCCACATTCAGGATAGCAGTTTTATTTaGCCTTTCTTTGCACAATGG | + |
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Preference number: 5 (lower is better) Translates to: EIVETKGKWSSQPRFHIQDSSFI*PFFAQW Trigger: CCATTGTGCAAAGAAAGGCAAAATAAAACTGCTATC...CTGAATGTGGAATCTGGGTTGAGATGACCATTTGCCTTTGGTCTCCACGATCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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| CDS CAA 72 bp | CTTCCGGCACCACGGAAATCTTCTTTGGGCTACATCTaGAAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: LPAPRKSSLGYI*KSRAFCASKGD Trigger: GTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAAGATGTAGCCCAAAGAAGATTTCCGTGGTGCCGGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110752.4 |
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