Pregenerated sensors for DEFA41 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079116

Ensembl transcript IDs: ENSMUST00000110754.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	CCCCAGCATCAGTGGCCTCAGAGCCGATGGTTGTCATATCTTTGTCATCTGCATTGGATAGGATCAGCCTaGGCCTGGAAGGCCAGCAGG	+
Preference number: 4 (lower is better) Translates to: PQHQWPQSRWLSYLCHLHWIGSA*AWKASR Trigger: CCTGCTGGCCTTCCAGGCCCAGGCTGATCCTATCCA...ATGCAGATGACAAAGATATGACAACCATCGGCTCTGAGGCCACTGATGCTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110754.2
CDS-3UTR CCA 90 bp	CCCAGCATCAGTGGCCTCAGAGCCGATGGTTGTCATATCTTTGTCATCTGCATATCTTCATCTGTTTTGTaGATAGGATCAGCCTGGGCC	+
Preference number: 4 (lower is better) Translates to: PSISGLRADGCHIFVICISSSVL*IGSAWA Trigger: GGCCCAGGCTGATCCTATCCACAAAACAGATGAAGA...TATGCAGATGACAAAGATATGACAACCATCGGCTCTGAGGCCACTGATGCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110754.2
CDS-3UTR GCA 90 bp	CCCAGCATCAGTGGCCTCAGAGCCGATGGTTGTCATATCTTTGTCATCTGCATACGCATTCTCTTCTTTTaGAGCCTCTTATTCTACAAT	+
Preference number: 4 (lower is better) Translates to: PSISGLRADGCHIFVICIRILFF*SLLFYN Trigger: ATTGTAGAATAAGAGGCTGCAAAAGAAGAGAATGCG...TATGCAGATGACAAAGATATGACAACCATCGGCTCTGAGGCCACTGATGCTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110754.2
CDS GCA 90 bp	TGGCCTCCAGAGGAGATAGACACAGCCTGGTCCTCTTCCCCTGGCTaGTCCTCAGTATTAGTCTCTTCATCTGTTTTGTGGATAGGATCA	+
Preference number: 5 (lower is better) Translates to: WPPEEIDTAWSSSPG*SSVLVSSSVLWIGS Trigger: TGATCCTATCCACAAAACAGATGAAGAGACTAATACTGAGGAGCAGCCAGGGGAAGAGGACCAGGCTGTGTCTATCTCCTCTGGAGGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110754.2
CDS-3UTR CAA 90 bp	ATTGCAAACAATTTATTGAGAAGTGATCATCAGGCCCCAGCATCAGTGGCCTCAACGCATTCTCTTCTTTaGCAGCCTCTTATTCTACAA	+
Preference number: 5 (lower is better) Translates to: IANNLLRSDHQAPASVASTHSLL*QPLILQ Trigger: TTGTAGAATAAGAGGCTGCAAAAGAAGAGAATGCGT...TGAGGCCACTGATGCTGGGGCCTGATGATCACTTCTCAATAAATTGTTTGCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110754.2
CDS GCA 72 bp	GAGGAGATAGACACAGCCTGGTCCTCTTCCCCTGGCTaGTCCTCAGTATTAGTCTCTTCATCTGTTTTGTGG	+
Preference number: 6 (lower is better) Translates to: EEIDTAWSSSPG*SSVLVSSSVLW Trigger: CCACAAAACAGATGAAGAGACTAATACTGAGGAGCAGCCAGGGGAAGAGGACCAGGCTGTGTCTATCTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110754.2
CDS GCA 72 bp	GATTTCTGCAGGTCCCAAAAACGCATTCTCTTCTTTTaGAGCCTCTTATTCTACAATAGCATATCAGCTTTT	+
Preference number: 6 (lower is better) Translates to: DFCRSQKRILFF*SLLFYNSISAF Trigger: AAAAGCTGATATGCTATTGTAGAATAAGAGGCTGCAAAAGAAGAGAATGCGTTTTTGGGACCTGCAGAAATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110754.2

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