Pregenerated sensors for DEFA40 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074441

Ensembl transcript IDs: ENSMUST00000098895.3

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	GAAGTGGACATCAGGCCCCAGCATCAGTGGCCTCAGTaGTCATGGAAGTCTTGTCCTCTGGGGTCTCCATGT	+
Preference number: 3 (lower is better) Translates to: EVDIRPQHQWPQ*SWKSCPLGSPC Trigger: ACATGGAGACCCCAGAGGACAAGACTTCCATGAGCACTGAGGCCACTGATGCTGGGGCCTGATGTCCACTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098895.3
3UTR-3UTR CAA 90 bp	GCATACTGCGGACAATTTATTGAGAAGTGGACATCAGGCCCCAGCATCAGTGGCGTGCTCATGGAAGTCTaGTCCTCTGGGGTCTCCATG	+
Preference number: 3 (lower is better) Translates to: AYCGQFIEKWTSGPSISGVLMEV*SSGVSM Trigger: CATGGAGACCCCAGAGGACAAGACTTCCATGAGCAC...GCCACTGATGCTGGGGCCTGATGTCCACTTCTCAATAAATTGTCCGCAGTATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098895.3
CDS-3UTR GCA 90 bp	AAGTGGACATCAGGCCCCAGCATCAGTGGCCTCAGTGCTCATGGAAGTCTTGTCGAGACAGACATAGCCTaGTCCTCTTCCTCTGGCTGC	+
Preference number: 4 (lower is better) Translates to: KWTSGPSISGLSAHGSLVETDIA*SSSSGC Trigger: GCAGCCAGAGGAAGAGGAGCAGGCTATGTCTGTCTC...GACAAGACTTCCATGAGCACTGAGGCCACTGATGCTGGGGCCTGATGTCCACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098895.3
CDS-3UTR CCA 90 bp	GAGAAGTGGACATCAGGCCCCAGCATCAGTGGCCTCAGTGCTCATGGAAGTCTTCTGCTCCTCTTCCTCTaGCTGCACCTCAGTATTAGT	+
Preference number: 4 (lower is better) Translates to: EKWTSGPSISGLSAHGSLLLLFL*LHLSIS Trigger: ACTAATACTGAGGTGCAGCCAGAGGAAGAGGAGCAG...AAGACTTCCATGAGCACTGAGGCCACTGATGCTGGGGCCTGATGTCCACTTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098895.3
CDS-3UTR GCA 90 bp	GGACAATTTATTGAGAAGTGGACATCAGGCCCCAGCATCAGTGGCCTCAGTGCTTCCTCTTCCTCTGGCTaGACCTCAGTATTAGTCTCT	+
Preference number: 4 (lower is better) Translates to: GQFIEKWTSGPSISGLSASSSSG*TSVLVS Trigger: AGAGACTAATACTGAGGTGCAGCCAGAGGAAGAGGA...AGCACTGAGGCCACTGATGCTGGGGCCTGATGTCCACTTCTCAATAAATTGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098895.3
CDS-3UTR CCA 90 bp	TTGAGAAGTGGACATCAGGCCCCAGCATCAGTGGCCTCAGTGCTCATGGAAGTCAAGATCAGAGCCTTCTaGATTTCCAAAGGAGACAGA	+
Preference number: 4 (lower is better) Translates to: LRSGHQAPASVASVLMEVKIRAF*ISKGDR Trigger: TCTGTCTCCTTTGGAAATCCAGAAGGCTCTGATCTT...GACTTCCATGAGCACTGAGGCCACTGATGCTGGGGCCTGATGTCCACTTCTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098895.3
CDS-3UTR GCA 90 bp	ATTGAGAAGTGGACATCAGGCCCCAGCATCAGTGGCCTCAGTGCTCATGGAAGTTGCGTTCTCTTCTTGTaGAGCCTCTTTTTCTACAAT	+
Preference number: 4 (lower is better) Translates to: IEKWTSGPSISGLSAHGSCVLFL*SLFFYN Trigger: ATTGTAGAAAAAGAGGCTGCACAAGAAGAGAACGCA...ACTTCCATGAGCACTGAGGCCACTGATGCTGGGGCCTGATGTCCACTTCTCAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098895.3
CDS-3UTR CAA 90 bp	GGACATCAGGCCCCAGCATCAGTGGCCTCAGTGCTCATGGAAGTCTTGTCCTCTAGGATCAGCCTGGACTaGGAAGGCCAGCAGGAAAAG	+
Preference number: 5 (lower is better) Translates to: GHQAPASVASVLMEVLSSRISLD*EGQQEK Trigger: CTTTTCCTGCTGGCCTTCCAAGTCCAGGCTGATCCT...AGAGGACAAGACTTCCATGAGCACTGAGGCCACTGATGCTGGGGCCTGATGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098895.3
CDS CCA 90 bp	GCATCCCAGATCTCTCAACGATTCTTCTTGAAGATCAGAGCCTTCTaGATTTCCAAAGGAGACAGACATAGCCTGCTCCTCTTCCTCTGG	+
Preference number: 5 (lower is better) Translates to: ASQISQRFFLKIRAF*ISKGDRHSLLLFLW Trigger: CCAGAGGAAGAGGAGCAGGCTATGTCTGTCTCCTTTGGAAATCCAGAAGGCTCTGATCTTCAAGAAGAATCGTTGAGAGATCTGGGATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098895.3