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Pregenerated sensors for DEFA39 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058618

Ensembl transcript IDs: ENSMUST00000071886.7

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 72 bp AAGGAATTGCAATTGAGGCTAAGCACAATGGGATTGTaGGGACCAAAAGCAAATGGTCATCTCAAACCAGAT +
Preference number: 3 (lower is better)
Translates to: KELQLRLSTMGL*GPKANGHLKPD
Trigger: ATCTGGTTTGAGATGACCATTTGCTTTTGGTCCTCACAATCCCATTGTGCTTAGCCTCAATTGCAATTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS-3UTR CCA 90 bp ATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATTGTGAGGACCAAATTGATAGGATCAGCCTaGACCTGGAAGGCCAGCAGG +
Preference number: 4 (lower is better)
Translates to: MREGIAIEAKHNGIVRTKLIGSA*TWKASR
Trigger: CCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCAA...TTTGGTCCTCACAATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS-3UTR CCA 90 bp GGGATTGTGAGGACCAAAAGCAAATGGTCATCTCAAACCAGATTCCACATTCAGCTGGTCCTCTTCCTCTaGCTGCTCCCCAGTTTTAGT +
Preference number: 4 (lower is better)
Translates to: GIVRTKSKWSSQTRFHIQLVLFL*LLPSFS
Trigger: ACTAAAACTGGGGAGCAGCCAGAGGAAGAGGACCAG...CTGAATGTGGAATCTGGTTTGAGATGACCATTTGCTTTTGGTCCTCACAATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS-3UTR TCA 90 bp ATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATTGTGAGGACCAAACTTTGGGCTACATATTaGAGAGCAGAGCCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: MREGIAIEAKHNGIVRTKLWATY*RAEPSV
Trigger: CACAGAAGGCTCTGCTCTTCAATATGTAGCCCAAAG...TTTGGTCCTCACAATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS-3UTR GCA 90 bp AGCAAGGAGTTTATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATTTATTTTGCCTTTCTTTaGACAATGGCAGCTTCGGGC +
Preference number: 4 (lower is better)
Translates to: SKEFMREGIAIEAKHNGIYFAFL*TMAASG
Trigger: GCCCGAAGCTGCCATTGTGCAAAGAAAGGCAAAATA...AATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCATAAACTCCTTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS-3UTR GCA 90 bp AGCAAGGAGTTTATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATTAGCTTGGGTGGTGATTaGACTTTTATTTTGCCTTTC +
Preference number: 4 (lower is better)
Translates to: SKEFMREGIAIEAKHNGISLGGD*TFILPF
Trigger: GAAAGGCAAAATAAAAGTGCAATCACCACCCAAGCT...AATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCATAAACTCCTTGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS TCA 90 bp ACTGGGCACTTCCGGCACCACGGAAACCTTCTTTGGGCTACATATTaGAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGACAGAAACAGCC +
Preference number: 5 (lower is better)
Translates to: TGHFRHHGNLLWATY*RAEPSVPPKETETA
Trigger: GGCTGTTTCTGTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAATATGTAGCCCAAAGAAGGTTTCCGTGGTGCCGGAAGTGCCCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS-3UTR CAA 90 bp CACAATGGGATTGTGAGGACCAAAAGCAAATGGTCATCTCAAACCAGATTCCACTCTTCATCTGTGTTTTaGATAGGATCAGCCTGGACC +
Preference number: 5 (lower is better)
Translates to: HNGIVRTKSKWSSQTRFHSSSVF*IGSAWT
Trigger: GGTCCAGGCTGATCCTATCAAAAACACAGATGAAGA...GTGGAATCTGGTTTGAGATGACCATTTGCTTTTGGTCCTCACAATCCCATTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS-3UTR CAA 90 bp CAATGGGATTGTGAGGACCAAAAGCAAATGGTCATCTCAAACCAGATTCCACATCCACGGAAACCTTCTTaGGGCTACATATTGAAGAGC +
Preference number: 5 (lower is better)
Translates to: QWDCEDQKQMVISNQIPHPRKPS*GYILKS
Trigger: GCTCTTCAATATGTAGCCCAAAGAAGGTTTCCGTGG...ATGTGGAATCTGGTTTGAGATGACCATTTGCTTTTGGTCCTCACAATCCCATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS-3UTR CAA 90 bp AGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATTGTGAGGACCAAAAGCTTATTTTGCCTTTCTTaGCACAATGGCAGCTTCGGG +
Preference number: 5 (lower is better)
Translates to: REGIAIEAKHNGIVRTKSLFCLS*HNGSFG
Trigger: CCCGAAGCTGCCATTGTGCAAAGAAAGGCAAAATAA...GCTTTTGGTCCTCACAATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS-3UTR CAA 90 bp GAGTTTATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATTGTGAGGTCTTTGGGCTACATATaGAAGAGCAGAGCCTTCTGT +
Preference number: 5 (lower is better)
Translates to: EFMREGIAIEAKHNGIVRSLGYI*KSRAFC
Trigger: ACAGAAGGCTCTGCTCTTCAATATGTAGCCCAAAGA...CCTCACAATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCATAAACTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS-3UTR CAA 90 bp GCACAATGGGATTGTGAGGACCAAAAGCAAATGGTCATCTCAAACCAGATTCCAGATTGCACTTTTATTTaGCCTTTCTTTGCACAATGG +
Preference number: 5 (lower is better)
Translates to: AQWDCEDQKQMVISNQIPDCTFI*PFFAQW
Trigger: CCATTGTGCAAAGAAAGGCAAAATAAAAGTGCAATC...TGGAATCTGGTTTGAGATGACCATTTGCTTTTGGTCCTCACAATCCCATTGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS CCA 72 bp GGGCACTGGGGGCATGTCGGGCACACAGGGCACTTCTaGCACACTTGGCACTTCTGGCACACTGGGCACTTC +
Preference number: 6 (lower is better)
Translates to: GHWGHVGHTGHF*HTWHFWHTGHF
Trigger: GAAGTGCCCAGTGTGCCAGAAGTGCCAAGTGTGCCAGAAGTGCCCTGTGTGCCCGACATGCCCCCAGTGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS CCA 72 bp TTTTGCCTTTCTTTGCACAATGGCAGCTTCGGGCACTaGGGGCATGTCGGGCACACAGGGCACTTCTGGCAC +
Preference number: 6 (lower is better)
Translates to: FCLSLHNGSFGH*GHVGHTGHFWH
Trigger: GTGCCAGAAGTGCCCTGTGTGCCCGACATGCCCCCAGTGCCCGAAGCTGCCATTGTGCAAAGAAAGGCAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS CAA 72 bp GCACACTGGGCACTTCCGGCACCACGGAAACCTTCTTaGGGCTACATATTGAAGAGCAGAGCCTTCTGTGCC +
Preference number: 6 (lower is better)
Translates to: AHWALPAPRKPS*GYILKSRAFCA
Trigger: GGCACAGAAGGCTCTGCTCTTCAATATGTAGCCCAAAGAAGGTTTCCGTGGTGCCGGAAGTGCCCAGTGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS CAA 90 bp GCACTTCTGGCACACTGGGCACTTCCGGCACCACGGAAACCTTCTTaGGGCTACATATTGAAGAGCAGAGCCTTCTGTGCCTCCAAAGGA +
Preference number: 6 (lower is better)
Translates to: ALLAHWALPAPRKPS*GYILKSRAFCASKG
Trigger: TCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAATATGTAGCCCAAAGAAGGTTTCCGTGGTGCCGGAAGTGCCCAGTGTGCCAGAAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS CAA 90 bp CACTGGGCACTTCCGGCACCACGGAAACCTTCTTTGGGCTACATATaGAAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGACAGAAACAGC +
Preference number: 6 (lower is better)
Translates to: HWALPAPRKPSLGYI*KSRAFCASKGDRNS
Trigger: GCTGTTTCTGTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAATATGTAGCCCAAAGAAGGTTTCCGTGGTGCCGGAAGTGCCCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS CAA 72 bp CTTCCGGCACCACGGAAACCTTCTTTGGGCTACATATaGAAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGAC +
Preference number: 6 (lower is better)
Translates to: LPAPRKPSLGYI*KSRAFCASKGD
Trigger: GTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAATATGTAGCCCAAAGAAGGTTTCCGTGGTGCCGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS TCA 72 bp TTCCGGCACCACGGAAACCTTCTTTGGGCTACATATTaGAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGACA +
Preference number: 6 (lower is better)
Translates to: FRHHGNLLWATY*RAEPSVPPKET
Trigger: TGTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAATATGTAGCCCAAAGAAGGTTTCCGTGGTGCCGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS GCA 72 bp TTCTTTGGGCTACATATTGAAGAGCAGAGCCTTCTGTaGCTCCAAAGGAGACAGAAACAGCCTGGTCCTCTT +
Preference number: 6 (lower is better)
Translates to: FFGLHIEEQSLL*LQRRQKQPGPL
Trigger: AAGAGGACCAGGCTGTTTCTGTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAATATGTAGCCCAAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS CAA 90 bp TTTATGCTGTGTATTTGGAGCTTGGGTGGTGATTGCACTTTTATTTaGCCTTTCTTTGCACAATGGCAGCTTCGGGCACTGGGGGCATGT +
Preference number: 6 (lower is better)
Translates to: FMLCIWSLGGDCTFI*PFFAQWQLRALGAC
Trigger: ACATGCCCCCAGTGCCCGAAGCTGCCATTGTGCAAAGAAAGGCAAAATAAAAGTGCAATCACCACCCAAGCTCCAAATACACAGCATAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS GCA 72 bp GCCTTTATGCTGTGTATTTGGAGCTTGGGTGGTGATTaGACTTTTATTTTGCCTTTCTTTGCACAATGGCAG +
Preference number: 6 (lower is better)
Translates to: AFMLCIWSLGGD*TFILPFFAQWQ
Trigger: CTGCCATTGTGCAAAGAAAGGCAAAATAAAAGTGCAATCACCACCCAAGCTCCAAATACACAGCATAAAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7
CDS TCA 72 bp AACAGCCTTTATGCTGTGTATTTGGAGCTTGGGTGGTaGTTGCACTTTTATTTTGCCTTTCTTTGCACAATG +
Preference number: 6 (lower is better)
Translates to: NSLYAVYLELGW*LHFYFAFLCTM
Trigger: CATTGTGCAAAGAAAGGCAAAATAAAAGTGCAATCACCACCCAAGCTCCAAATACACAGCATAAAGGCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071886.7