Pregenerated sensors for DEFA38 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061958

Ensembl transcript IDs: ENSMUST00000077452.4

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TTTGCCTTTCTTCGCACAATGGCTGCTTTGGGCACTGAGGGCATGTaGGGCACACAGGGCACTTCTGGCACACTTGGCACTTCTGGCACA	+
Preference number: 5 (lower is better) Translates to: FAFLRTMAALGTEGM*GTQGTSGTLGTSGT Trigger: TGTGCCAGAAGTGCCAAGTGTGCCAGAAGTGCCCTGTGTGCCCCACATGCCCTCAGTGCCCAAAGCAGCCATTGTGCGAAGAAAGGCAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077452.4
CDS TCA 90 bp	ACTGGGCACTTCCGGCACCACAGAAACCTTCGTTGGGCTACATCTTaGAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGACAGAAACAGCC	+
Preference number: 5 (lower is better) Translates to: TGHFRHHRNLRWATS*RAEPSVPPKETETA Trigger: GGCTGTTTCTGTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAAGATGTAGCCCAACGAAGGTTTCTGTGGTGCCGGAAGTGCCCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077452.4
CDS CCA 90 bp	TCTTCCTCTGGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTGTTTTaGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGGCAAGGGCA	+
Preference number: 5 (lower is better) Translates to: SSSGCSSVLVSSSVF*IGSAWTWKASRARA Trigger: TGCCCTTGCCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCCAGAGGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077452.4
CDS CCA 72 bp	CTTCGCACAATGGCTGCTTTGGGCACTGAGGGCATGTaGGGCACACAGGGCACTTCTGGCACACTTGGCACT	+
Preference number: 6 (lower is better) Translates to: LRTMAALGTEGM*GTQGTSGTLGT Trigger: AGTGCCAAGTGTGCCAGAAGTGCCCTGTGTGCCCCACATGCCCTCAGTGCCCAAAGCAGCCATTGTGCGAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077452.4
CDS CAA 90 bp	CTCTTCCTCTGGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTGTTTaGGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGGCAAGGGC	+
Preference number: 6 (lower is better) Translates to: LFLWLLLSFSLFICV*DRISLDLEGQQGKG Trigger: GCCCTTGCCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCCAGAGGAAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077452.4
CDS CAA 90 bp	CACTGGGCACTTCCGGCACCACAGAAACCTTCGTTGGGCTACATCTaGAAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGACAGAAACAGC	+
Preference number: 6 (lower is better) Translates to: HWALPAPQKPSLGYI*KSRAFCASKGDRNS Trigger: GCTGTTTCTGTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAAGATGTAGCCCAACGAAGGTTTCTGTGGTGCCGGAAGTGCCCAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077452.4
CDS CAA 72 bp	CTTCCGGCACCACAGAAACCTTCGTTGGGCTACATCTaGAAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGAC	+
Preference number: 6 (lower is better) Translates to: LPAPQKPSLGYI*KSRAFCASKGD Trigger: GTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAAGATGTAGCCCAACGAAGGTTTCTGTGGTGCCGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077452.4
CDS GCA 72 bp	TTCGTTGGGCTACATCTTGAAGAGCAGAGCCTTCTGTaGCTCCAAAGGAGACAGAAACAGCCTGGTCCTCTT	+
Preference number: 6 (lower is better) Translates to: FVGLHLEEQSLL*LQRRQKQPGPL Trigger: AAGAGGACCAGGCTGTTTCTGTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAAGATGTAGCCCAACGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077452.4
CDS CAA 90 bp	TTTATGCTGTGTATTTGGAGCTTGGGTGGTGATTGCAGTTTTATTTaGCCTTTCTTCGCACAATGGCTGCTTTGGGCACTGAGGGCATGT	+
Preference number: 6 (lower is better) Translates to: FMLCIWSLGGDCSFI*PFFAQWLLWALRAC Trigger: ACATGCCCTCAGTGCCCAAAGCAGCCATTGTGCGAAGAAAGGCAAAATAAAACTGCAATCACCACCCAAGCTCCAAATACACAGCATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077452.4