Pregenerated sensors for DEFA35 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061845

Ensembl transcript IDs: ENSMUST00000078121.4

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 90 bp	TCCTCTTCCCCTGGCTGCTCCTCAGTATTAGTCTCTTCATCTGTTTaGTGGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGACAAGG	+
Preference number: 6 (lower is better) Translates to: SSSPGCSSVLVSSSV*WIGSAWTWKASRTR Trigger: CCTTGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCACAAAACAGATGAAGAGACTAATACTGAGGAGCAGCCAGGGGAAGAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078121.4
CDS CCA 72 bp	TTAGTCTCTTCATCTGTTTTGTGGATAGGATCAGCCTaGACCTGGAAGGCCAGCAGGACAAGGGCAGAGAGG	+
Preference number: 6 (lower is better) Translates to: LVSSSVLWIGSA*TWKASRTRAER Trigger: CCTCTCTGCCCTTGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCACAAAACAGATGAAGAGACTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078121.4
CDS CCA 72 bp	GGCTGCTCCTCAGTATTAGTCTCTTCATCTGTTTTGTaGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGG	+
Preference number: 6 (lower is better) Translates to: GCSSVLVSSSVL*IGSAWTWKASR Trigger: CCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCACAAAACAGATGAAGAGACTAATACTGAGGAGCAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078121.4
CDS GCA 72 bp	AAAGAGATAGACACAGCCTGGTCCTCTTCCCCTGGCTaGTCCTCAGTATTAGTCTCTTCATCTGTTTTGTGG	+
Preference number: 6 (lower is better) Translates to: KEIDTAWSSSPG*SSVLVSSSVLW Trigger: CCACAAAACAGATGAAGAGACTAATACTGAGGAGCAGCCAGGGGAAGAGGACCAGGCTGTGTCTATCTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078121.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu