Pregenerated sensors for DEFA33 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094362

Ensembl transcript IDs: ENSMUST00000120874.5

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TCCTCCCCTGCCTGCTCCTCAGTATTAGTCTCCTCATCTGTGTTTTaGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGACGAGGGCA	+
Preference number: 5 (lower is better) Translates to: SSPACSSVLVSSSVF*IGSAWTWKASRTRA Trigger: TGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAGGAGACTAATACTGAGGAGCAGGCAGGGGAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120874.5
CDS CCA 90 bp	GCATATCAGATCTCTCGACGATTTTTCATGAAGAGCAGATCCTTCTaGGTCTCCAAAGGAGACAGACACAGCCTGGTCCTCCTCCCCTGC	+
Preference number: 5 (lower is better) Translates to: AYQISRRFFMKSRSF*VSKGDRHSLVLLPC Trigger: GCAGGGGAGGAGGACCAGGCTGTGTCTGTCTCCTTTGGAGACCCAGAAGGATCTGCTCTTCATGAAAAATCGTCGAGAGATCTGATATGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120874.5
CDS GCA 72 bp	GTCCTGAGCAGGTCCCATAAACTTGTTCTCCTCTATTaGAGCCTCCTTTTCTACAATAGCATATCAGATCTC	+
Preference number: 6 (lower is better) Translates to: VLSRSHKLVLLY*SLLFYNSISDL Trigger: GAGATCTGATATGCTATTGTAGAAAAGGAGGCTGCAATAGAGGAGAACAAGTTTATGGGACCTGCTCAGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120874.5

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