Pregenerated sensors for DEFA30 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074444

Ensembl transcript IDs: ENSMUST00000098898.5

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GTTTTAGTCTCTTCATCTGTGTTTTGGATAGGATCAGCCTGGACCTaGAAGGCCAGCAGGACGAGGGCAGAGAGGAGGATTAGTGTCTTC	+
Preference number: 5 (lower is better) Translates to: VLVSSSVFWIGSAWT*KASRTRAERRISVF Trigger: GAAGACACTAATCCTCCTCTCTGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098898.5
CDS GCA 90 bp	CTTACTGCAGGTCCCATTCATGCGTTCTCTTCCTTTGCAGCCTCTTaGTCTACAATAGCATACCAGATCTCTCAACGATTCCTCTTGAAG	+
Preference number: 5 (lower is better) Translates to: LTAGPIHAFSSFAAS*STIAYQISQRFLLK Trigger: CTTCAAGAGGAATCGTTGAGAGATCTGGTATGCTATTGTAGAGCAAGAGGCTGCAAAGGAAGAGAACGCATGAATGGGACCTGCAGTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098898.5
CDS GCA 90 bp	AGCAGAGCATGTACATTAAATGACCCTTACTGCAGGTCCCATTCATaGGTTCTCTTCCTTTGCAGCCTCTTGCTCTACAATAGCATACCA	+
Preference number: 5 (lower is better) Translates to: SRACTLNDPYCRSHS*VLFLCSLLLYNSIP Trigger: TGGTATGCTATTGTAGAGCAAGAGGCTGCAAAGGAAGAGAACGCATGAATGGGACCTGCAGTAAGGGTCATTTAATGTACATGCTCTGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098898.5
CDS CAA 90 bp	CTCTTCCCCTGGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTGTTTaGGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGACGAGGGC	+
Preference number: 6 (lower is better) Translates to: LFPWLLLSFSLFICV*DRISLDLEGQQDEG Trigger: GCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCCAGGGGAAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098898.5
CDS CAA 90 bp	GCCTCTTGCTCTACAATAGCATACCAGATCTCTCAACGATTCCTCTaGAAGAGAAGAGCCTTCTGGGTCTCCAAAAGAGACAGACACAGC	+
Preference number: 6 (lower is better) Translates to: ASCSTIAYQISQRFL*KRRAFWVSKRDRHS Trigger: GCTGTGTCTGTCTCTTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATCGTTGAGAGATCTGGTATGCTATTGTAGAGCAAGAGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098898.5
CDS GCA 72 bp	GGTCCCATTCATGCGTTCTCTTCCTTTGCAGCCTCTTaGTCTACAATAGCATACCAGATCTCTCAACGATTC	+
Preference number: 6 (lower is better) Translates to: GPIHAFSSFAAS*STIAYQISQRF Trigger: GAATCGTTGAGAGATCTGGTATGCTATTGTAGAGCAAGAGGCTGCAAAGGAAGAGAACGCATGAATGGGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098898.5
CDS GCA 72 bp	TGTACATTAAATGACCCTTACTGCAGGTCCCATTCATaGGTTCTCTTCCTTTGCAGCCTCTTGCTCTACAAT	+
Preference number: 6 (lower is better) Translates to: CTLNDPYCRSHS*VLFLCSLLLYN Trigger: ATTGTAGAGCAAGAGGCTGCAAAGGAAGAGAACGCATGAATGGGACCTGCAGTAAGGGTCATTTAATGTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098898.5

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