Pregenerated sensors for DEFA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074440Ensembl transcript IDs: ENSMUST00000098893.4
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTTTTAGTCTCTTCATCTGTGTTTTGGATAGGATCAGCCTGGACCTaGAAGGCCAGCAGGACGAGGGCAGAGAGGAGGACTAGTGTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: VLVSSSVFWIGSAWT*KASRTRAERRTSVF Trigger: GAAGACACTAGTCCTCCTCTCTGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098893.4 |
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| CDS GCA 90 bp | AGCAGAGTGTGTACATTAAATGACCCTTTCTGCAGGTCCCATTCATaGGTTCTCTTCTTTTGCAGCCTCTTTTTCTACAATAGCATACCA | + |
|
Preference number: 5 (lower is better) Translates to: SRVCTLNDPFCRSHS*VLFFCSLFFYNSIP Trigger: TGGTATGCTATTGTAGAAAAAGAGGCTGCAAAAGAAGAGAACGCATGAATGGGACCTGCAGAAAGGGTCATTTAATGTACACACTCTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098893.4 |
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| CDS CAA 90 bp | GTCTTCCCCTGGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTGTTTaGGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGACGAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: VFPWLLLSFSLFICV*DRISLDLEGQQDEG Trigger: GCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCCAGGGGAAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098893.4 |
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| CDS CAA 90 bp | GCCTCTTTTTCTACAATAGCATACCAGATCTCTCAACGATTCCTCTaGAAGAGAAGAGCCTTCTGGGTCTCCAAAAGAGACAGACACAGC | + |
|
Preference number: 6 (lower is better) Translates to: ASFSTIAYQISQRFL*KRRAFWVSKRDRHS Trigger: GCTGTGTCTGTCTCTTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATCGTTGAGAGATCTGGTATGCTATTGTAGAAAAAGAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098893.4 |
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